TCONS_00042950 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042950
Unique NameTCONS_00042950
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1155

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042950 ID=TCONS_00042950|Name=TCONS_00042950|organism=Clytia hemisphaerica|type=transcript|length=1155bp
TAAAGCCTTTTAATTGTCaagagtgtggtaaatcttttggaCTTAGGACG
ACCTTAACTTCTCATCAAAGAACTGTTCATGAAGGTGTAAATGCCTtcaa
atgtcaagaatgtggtaaatcttttgggCAAAAGACGAACTTAACTTCTC
ATCAAAGAACTGTTCATGAATGTGTAAAGGCCTtcaaatgtcaagaatgt
ggtaaatgtttttctACAAAGAGTTCTTTGAAAAGGCATCAAAGAACAGT
CCATGATAAAGCCTTTTGAGCGTCAGAAATAAGGAAAAAGAATTGAGAGA
AAGGTTCGTTAAAGAAACACGAAAgaatttataaatttcattGATGTGAA
ATGTCATTGATGTGGTAGACTTTTTTTCACTCTTATCCACAGACACGTCG
AAAGGAAGTTCAAGAAGGGATTGAATGTTTCAATGTGTGAAAAGTGTTGC
AAATTTAATTGAAGATAAACAAGGAGCGCAGGCTAATAGCGATGGGAGCC
TTTTATTATCTTTAAGTATCAAAATTTCAACGAATGTTGTCATTGATAAC
GAGCTACTGAGCCTTCAACGGCACTTTCTTtaggaaaattgaaacaaatg
aTCATATACTTACTGCCAACCTTTCTTAGAAACACAGAAATTTATAATAA
ACCTGCCAGTTGAAGCTAATTTTGTCCTAATTAGCCTTTTTTCTataatt
tattttatattttagaatgtacattttgttttataaacaTAGGAAAAGTG
GGTGCCAGCTAGCAAATGATATTTCACAAAAGACGCTATAAAATACAAAT
AAtatatcaatcgtaaaaggggttacgcacggagaacgagtctcgtgttc
gcaaagcgaaagggattctatAGAGCCAACTATTTCCCGGGTTAGAAGAT
CAacaataactcggaaagctaaaggaagcaaaaattccgaagttaaaaaa
tgaaaaataacttccgggtctctattatttcgaatgtttttgttcgaaaa
tcttgttagattcgaattttagattcgaacaaaaacattcgaccgaagtt
cccgccaaaattatgcacataaaaataaagaaaaattttgtcgatccaga
agcttcaaaataaatgcagcagctttttcagagatgtgaaatTATTATAC
ATTAC
Run BLAST on NCBI

transcript from alignment at sc0003803:1..1155+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042950 ID=TCONS_00042950|Name=TCONS_00042950|organism=Clytia hemisphaerica|type=transcript|length=1155bp|location=Sequence derived from alignment at sc0003803:1..1155+ (Clytia hemisphaerica)
TAAAGCCTTTTAATTGTCaagagtgtggtaaatcttttggaCTTAGGACG
ACCTTAACTTCTCATCAAAGAACTGTTCATGAAGGTGTAAATGCCTtcaa
atgtcaagaatgtggtaaatcttttgggCAAAAGACGAACTTAACTTCTC
ATCAAAGAACTGTTCATGAATGTGTAAAGGCCTtcaaatgtcaagaatgt
ggtaaatgtttttctACAAAGAGTTCTTTGAAAAGGCATCAAAGAACAGT
CCATGATAAAGCCTTTTGAGCGTCAGAAATAAGGAAAAAGAATTGAGAGA
AAGGTTCGTTAAAGAAACACGAAAgaatttataaatttcattGATGTGAA
ATGTCATTGATGTGGTAGACTTTTTTTCACTCTTATCCACAGACACGTCG
AAAGGAAGTTCAAGAAGGGATTGAATGTTTCAATGTGTGAAAAGTGTTGC
AAATTTAATTGAAGATAAACAAGGAGCGCAGGCTAATAGCGATGGGAGCC
TTTTATTATCTTTAAGTATCAAAATTTCAACGAATGTTGTCATTGATAAC
GAGCTACTGAGCCTTCAACGGCACTTTCTTtaggaaaattgaaacaaatg
aTCATATACTTACTGCCAACCTTTCTTAGAAACACAGAAATTTATAATAA
ACCTGCCAGTTGAAGCTAATTTTGTCCTAATTAGCCTTTTTTCTataatt
tattttatattttagaatgtacattttgttttataaacaTAGGAAAAGTG
GGTGCCAGCTAGCAAATGATATTTCACAAAAGACGCTATAAAATACAAAT
AAtatatcaatcgtaaaaggggttacgcacggagaacgagtctcgtgttc
gcaaagcgaaagggattctatAGAGCCAACTATTTCCCGGGTTAGAAGAT
CAacaataactcggaaagctaaaggaagcaaaaattccgaagttaaaaaa
tgaaaaataacttccgggtctctattatttcgaatgtttttgttcgaaaa
tcttgttagattcgaattttagattcgaacaaaaacattcgaccgaagtt
cccgccaaaattatgcacataaaaataaagaaaaattttgtcgatccaga
agcttcaaaataaatgcagcagctttttcagagatgtgaaatTATTATAC
ATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026715XLOC_026715Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042950-exon-sc0003803-1491911889:1..1155TCONS_00042950-exon-sc0003803-1491911889:1..1155Clytia hemisphaericaexon
TCONS_00042950-exon-sc0003803-1510915933:1..1155TCONS_00042950-exon-sc0003803-1510915933:1..1155Clytia hemisphaericaexon
TCONS_00042950-exon-sc0003803-1575043694:1..1155TCONS_00042950-exon-sc0003803-1575043694:1..1155Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003803supercontigsc0003803:1..1155 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.89652	1.83284	2.28763	1.62719	2.3937	2.24954	2.52196	2.63946	1.68577	1.38789	1.72434	1.8742	1.90577	1.6683	1.06908	1.46682	1.09645	1.12289	1.04952	0.847532	1.05488	0.908665	1.40204	1.84697	1.71341	2.89538	1.40859	1.2444	1.31029	0.969264
Blast
[Close]
BLAST of TCONS_00042950 vs. Swiss-Prot (Human)
Match: ZN510 (Zinc finger protein 510 OS=Homo sapiens GN=ZNF510 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.326e-20
Identity = 54/112 (48.21%), Postives = 73/112 (65.18%), Query Frame = 3 
Query:    3 KPFNCQECGKSFGLRTTLTSHQRTVHEGVNAFKCQECGKSFGQKTNLTSHQRTVHECVKAFKCQECGKCFSTKSSLKRHQRTVH--DKAF*ASEIRKKN*EKGSLKKHERIY 332
            KP+ C ECGKSF  +  L  HQRT H G   F+C ECGK+F QK++L++HQR +H   K +KC ECGK F  KS+L+ HQR +H  +K +  SE  K   +K +L+ H RI+
Sbjct:  402 KPYKCNECGKSFCQKGHLIQHQRT-HTGEKPFECSECGKTFSQKSHLSTHQR-IHTAEKPYKCNECGKTFVQKSTLRGHQR-IHTGEKPYECSECGKTFVQKSTLRDHHRIH 510

HSP 2 Score: 84.3445 bits (207), Expect = 1.461e-17
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 3 
Query:    3 KPFNCQECGKSFGLRTTLTSHQRTVHEGVNAFKCQECGKSFGQKTNLTSHQRTVHECVKAFKCQECGKCFSTKSSLKRHQRT 248
            KPF C ECGK+F   +TL  HQR +H G   FKC ECGK F +K  L+ HQR +H   K F+C +CGK F  KS+L+ HQRT
Sbjct:  570 KPFKCNECGKTFARTSTLRVHQR-IHTGEKPFKCNECGKKFVRKAILSDHQR-IHTGEKPFQCNKCGKTFGQKSNLRIHQRT 649

HSP 3 Score: 84.3445 bits (207), Expect = 1.502e-17
Identity = 55/139 (39.57%), Postives = 73/139 (52.52%), Query Frame = 3 
Query:    3 KPFNCQECGKSFGLRTTLTSHQRTVHEGVNAFKCQECGKSFGQKTNLTSHQRT---------------------------VHECVKAFKCQECGKCFSTKSSLKRHQRTVH--DKAF*ASEIRKKN*EKGSLKKHERIY 332
            KP+ C ECGK+F  ++TL  H R +H G  +F+C +CGK+FGQK+NL  HQRT                            H   K FKC ECGK F+  S+L+ HQR +H  +K F  +E  KK   K  L  H+RI+
Sbjct:  486 KPYECSECGKTFVQKSTLRDHHR-IHTGEKSFQCNQCGKTFGQKSNLRIHQRTHTGEKTYQCNECEKSFWRKDHLIQHQKTHTGEKPFKCNECGKTFARTSTLRVHQR-IHTGEKPFKCNECGKKFVRKAILSDHQRIH 622

HSP 4 Score: 83.5741 bits (205), Expect = 2.397e-17
Identity = 48/112 (42.86%), Postives = 72/112 (64.29%), Query Frame = 3 
Query:    3 KPFNCQECGKSFGLRTTLTSHQRTVHEGVNAFKCQECGKSFGQKTNLTSHQRTVHECVKAFKCQECGKCFSTKSSLKRHQRTVH--DKAF*ASEIRKKN*EKGSLKKHERIY 332
            KPF C ECGK+F  ++ L++HQR +H     +KC ECGK+F QK+ L  HQR +H   K ++C ECGK F  KS+L+ H R +H  +K+F  ++  K   +K +L+ H+R +
Sbjct:  430 KPFECSECGKTFSQKSHLSTHQR-IHTAEKPYKCNECGKTFVQKSTLRGHQR-IHTGEKPYECSECGKTFVQKSTLRDHHR-IHTGEKSFQCNQCGKTFGQKSNLRIHQRTH 538
The following BLAST results are available for this feature:
BLAST of TCONS_00042950 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN5104.326e-2048.21Zinc finger protein 510 OS=Homo sapiens GN=ZNF510 ... [more]
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