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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042951 ID=TCONS_00042951|Name=TCONS_00042951|organism=Clytia hemisphaerica|type=transcript|length=1293bpRun BLAST on NCBI transcript from alignment at sc0003803:2..5006+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00042951 ID=TCONS_00042951|Name=TCONS_00042951|organism=Clytia hemisphaerica|type=transcript|length=5005bp|location=Sequence derived from alignment at sc0003803:2..5006+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00042951 vs. Swiss-Prot (Human)
Match: ZN33A (Zinc finger protein 33A OS=Homo sapiens GN=ZNF33A PE=1 SV=3) HSP 1 Score: 124.79 bits (312), Expect = 2.010e-37 Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = 2
Query: 2 KPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFKCQECGKSFGHKSTLTLHQRTVHEGIKPFKCQECGKCFGQKTNLTSHQRTVHQGIKAYKCHQCGKSFAKKTCLKQHQLT 334
KPF C EC K+F ++ LT HQR+ H G KPF+C ECGK+F HKS LTLHQRT H G KP++C CGK F QK++LT HQRT H G+K Y+C++CGKSF + LK HQ T
Sbjct: 354 KPFQCNECEKAFWDKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFCQKSDLTKHQRT-HTGLKPYECYECGKSFRVTSHLKVHQRT 461 HSP 2 Score: 50.0618 bits (118), Expect = 2.010e-37 Identity = 28/51 (54.90%), Postives = 32/51 (62.75%), Query Frame = 1
Query: 352 KAFVCQECGKCFAEKRNFTSHQRTIHQG*KNF*CQECGKCFSTKTYLKRPQ 504
K F C ECGK F+EK N T HQR IH G K++ C CGK F K+ L R Q
Sbjct: 466 KPFECLECGKSFSEKSNLTQHQR-IHIGDKSYECNACGKTFYHKSLLTRHQ 515 HSP 3 Score: 116.701 bits (291), Expect = 1.575e-34 Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 2
Query: 2 KPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFKCQECGKSFGHKSTLTLHQRTVHEGIKPFKCQECGKCFGQKTNLTSHQRTVHQGIKAYKCHQCGKSFAKKTCLKQHQL 331
KP+ C CGK+F ++ LT HQRT H G+KP++C ECGKSF S L +HQRT H G KPF+C ECGK F +K+NLT HQR +H G K+Y+C+ CGK+F K+ L +HQ+
Sbjct: 410 KPYQCNACGKTFCQKSDLTKHQRT-HTGLKPYECYECGKSFRVTSHLKVHQRT-HTGEKPFECLECGKSFSEKSNLTQHQR-IHIGDKSYECNACGKTFYHKSLLTRHQI 516 HSP 4 Score: 48.1358 bits (113), Expect = 1.575e-34 Identity = 26/53 (49.06%), Postives = 31/53 (58.49%), Query Frame = 1
Query: 352 KAFVCQECGKCFAEKRNFTSHQRTIHQG*KNF*CQECGKCFSTKTYLKRPQRT 510
K F C ECGK F+ K + H RT H G K + C ECGK F K+YL + RT
Sbjct: 550 KPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRT 601 HSP 5 Score: 114.005 bits (284), Expect = 2.154e-32 Identity = 63/111 (56.76%), Postives = 77/111 (69.37%), Query Frame = 2
Query: 2 KPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFKCQECGKSFGHKSTLTLHQRTVHEGIKPFKCQECGKCFGQKTNLTSHQRTVHQGIKAYKCHQCGKSFAKKTCLKQHQLT 334
KPF C ECGK F ++TL+ H RT H G KP++C ECGK F +KS LT H RT H G KP++C ECGK F QK+ LT HQR +H G K YKC++CGK+F K+ L HQ T
Sbjct: 550 KPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRT-HTGEKPYECNECGKAFYQKSQLTQHQR-IHIGEKPYKCNECGKAFCHKSALIVHQRT 657 HSP 6 Score: 43.8986 bits (102), Expect = 2.154e-32 Identity = 34/105 (32.38%), Postives = 50/105 (47.62%), Query Frame = 1
Query: 352 KAFVCQECGKCFAEKRNFTSHQRTIHQG*KNF*CQECGKCFSTKTYLKRPQRT-VHDKAF*VSTIEILLVRKVRYRNIKEKYMIKLNLFSVMDVVNLCISIFLQT 663
K + C ECGK F K + T H R H G K+ C ECGK F K+ L + QR+ +K + +T +K + ++ I NL + MD+ N + L
Sbjct: 690 KPYECNECGKFFRHKSSLTVHHRA-HTGEKSCQCNECGKIFYRKSELAQHQRSHTGEKPYECNTCRKTFSQKSNLI-VHQRRHIGENLMNEMDIRNFQPQVSLHN 792 HSP 7 Score: 107.071 bits (266), Expect = 5.372e-31 Identity = 63/138 (45.65%), Postives = 76/138 (55.07%), Query Frame = 2
Query: 2 KPFNCQECGKSFGLRTTLTSHQRT---------------------------VHEGIKPFKCQECGKSFGHKSTLTLHQRTVHEGIKPFKCQECGKCFGQKTNLTSHQRTVHQGIKAYKCHQCGKSFAKKTCLKQHQLT 334
KPF C ECGKSF ++ LT HQR +H G KP++C ECGK+F KS LT+HQRT H G KPF C ECGK F K+ L+ H RT H G K Y+CH+CGK F K+ L +H T
Sbjct: 466 KPFECLECGKSFSEKSNLTQHQRIHIGDKSYECNACGKTFYHKSLLTRHQIIHTGWKPYECYECGKTFCLKSDLTVHQRT-HTGQKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRT 601 HSP 8 Score: 46.2098 bits (108), Expect = 5.372e-31 Identity = 27/53 (50.94%), Postives = 31/53 (58.49%), Query Frame = 1
Query: 352 KAFVCQECGKCFAEKRNFTSHQRTIHQG*KNF*CQECGKCFSTKTYLKRPQRT 510
K + C ECGK F +K T HQR IH G K + C ECGK F K+ L QRT
Sbjct: 606 KPYECNECGKAFYQKSQLTQHQR-IHIGEKPYKCNECGKAFCHKSALIVHQRT 657 HSP 9 Score: 94.7449 bits (234), Expect = 2.231e-27 Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 2
Query: 2 KPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFKCQECGKSFGHKSTLTLHQRTVHEGIKPFKCQECGKCFGQKTNLTSHQRTVHQGIKAYKCHQCGKSFAKKTCLKQHQLT 334
K ++C E G +F + L SH + +G K F+C ECGK+F KS LT HQR VH G KPF+C EC K F K+NLT HQR+ H G K ++C++CGK+F+ K+ L HQ T
Sbjct: 298 KHYDCGESGNNFRRKLCL-SHLQKGDKGEKHFECNECGKAFWEKSHLTRHQR-VHTGQKPFQCNECEKAFWDKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT 405 HSP 10 Score: 46.595 bits (109), Expect = 2.231e-27 Identity = 26/53 (49.06%), Postives = 32/53 (60.38%), Query Frame = 1
Query: 352 KAFVCQECGKCFAEKRNFTSHQRTIHQG*KNF*CQECGKCFSTKTYLKRPQRT 510
K + C CGK F +K + T HQRT H G K + C ECGK F ++LK QRT
Sbjct: 410 KPYQCNACGKTFCQKSDLTKHQRT-HTGLKPYECYECGKSFRVTSHLKVHQRT 461 HSP 11 Score: 106.301 bits (264), Expect = 1.657e-24 Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 2
Query: 2 KPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFKCQECGKSFGHKSTLTLHQRTVHEGIKPFKCQECGKCFGQKTNLTSHQRTVHQGIKAYKCHQCGKSFAKKTCLKQH 325
KP+ C ECGK+F ++ LT HQR +H G KP+KC ECGK+F HKS L +HQRT H KP+KC ECGK F K+ L H+R H G K Y+C++CGK F K+ L H
Sbjct: 606 KPYECNECGKAFYQKSQLTQHQR-IHIGEKPYKCNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLIFHERK-HTGEKPYECNECGKFFRHKSSLTVH 710 HSP 12 Score: 105.916 bits (263), Expect = 2.376e-24 Identity = 60/109 (55.05%), Postives = 73/109 (66.97%), Query Frame = 2
Query: 2 KPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFKCQECGKSFGHKSTLTLHQRTVHEGIKPFKCQECGKCFGQKTNLTSHQRTVHQGIKAYKCHQCGKSFAKKTCLKQHQ 328
KP+ C ECGK F ++ LT H RT H G KP++C ECGK+F KS LT HQR +H G KP+KC ECGK F K+ L HQRT H K YKC++CGKSF K+ L H+
Sbjct: 578 KPYECHECGKIFYNKSYLTKHNRT-HTGEKPYECNECGKAFYQKSQLTQHQR-IHIGEKPYKCNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLIFHE 683 HSP 13 Score: 99.7525 bits (247), Expect = 2.627e-22 Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 2
Query: 2 KPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFKCQECGKSFGHKSTLTLHQRTVHEGIKPFKCQECGKCFGQKTNLTSHQRTVHQGIKAYKCHQCGKSFAKKTCLKQHQ 328
KP+ C ECGKSF +++ L H+R H G KP++C ECGK F HKS+LT+H R H G K +C ECGK F +K+ L HQR+ H G K Y+C+ C K+F++K+ L HQ
Sbjct: 662 KPYKCNECGKSFCVKSGLIFHERK-HTGEKPYECNECGKFFRHKSSLTVHHR-AHTGEKSCQCNECGKIFYRKSELAQHQRS-HTGEKPYECNTCRKTFSQKSNLIVHQ 767 The following BLAST results are available for this feature:
BLAST of TCONS_00042951 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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