XLOC_025456 (gene) - C. hemisphaerica

Overview
NameXLOC_025456
Unique NameXLOC_025456
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0002895:16457..22401+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_025456 ID=XLOC_025456|Name=XLOC_025456|organism=Clytia hemisphaerica|type=gene|length=5945bp|location=Sequence derived from alignment at sc0002895:16457..22401+ (Clytia hemisphaerica)
NGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGGTGTTGTCT TTGTTTCTGTCGGTTGCACGACTTCAGTCTGTGTCACTGGTGATTGGACA ACTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGCTGCAC GACTTCTGTCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTA TCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGTCACT GGTGGCTGAACAACTTTGGTTGTAGCGACTATCGGTGTTGTCTTTGTTTC TGTCGCTTGTACGACTTCTGTCTGGCTAACTGAAGGTTGCACGACCTCTG TCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGGTGTT GTCTTTGTTTCTGTCGGTTGCACGACATCTGTCTGGGTCACTGGTGGCTG AACAACTTCAGTTGTAGCGACTATCGGTGTTGTCTTTGTTTCTGTCGGTT GCACGACTTCTGTCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCA ACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGT CACTGGTGGCTGAACAACTTTGGTTGTAGCGACTATCGGTGTTGTCTTTG TTTCTGTCGCTTGTACGACTTCTGTCTGGCTAACTGAAGGTTGCACGACC TCTGTCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGG TGTTGTCTTTGTTTCTGTCGGTTGCACGACATCTGTCTGGGTCACTGGTG GCTGAACAACTTTGGTTGTAGCAACTATTGGTGTTGTCTTTGTTTCTGTC GGTTGCACGACTTCTGTCTGGGTCACTGGTGGCTGAACAACTTCGGTTGT AGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCT GGGTCACTGGTGGCTGAACAACTTTGGTTGTAGCAACTATCGGTGTTGTC TTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGTCACTGGTGGCTGAAC AACTTTGGTTGTAGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCA CGACTTCTGTCTGTGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACT ATTGGTGTTGTCCTTGTTTCTGTCGGTTGCACGACTTCAGTCTGTGTCAC TGGTGGTTGGACAAGTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGCTT CTGTCGGTTGCACGACTTCAGTCTGTGTCACTGGTGGCTGAATAACTTCA GTTGTAGCAACTATCGGTGTTGTCTTTGTCTCTGAAGGTTGCACGACTTC TGTCTGACTGACTGAAGGTTGTACGACTACAGTTCCGGTTGCTGGTGGCT GAACAACTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGTCTCTGAAGGT TGCACGACTTCTGTCTGACTGACTGAAGGTTGTACGACTACAGTTCCGGT TGCTGGTGGCTGAACAACTTCGGTTGTAGCAACTATCGGTGTCGTCTTTG TTTCTGTTAGTTGCACGACAGTTGTTTGGGGGCCAGGCTGCTCAACAAAA CTGGTCGTAGGAGTGGCTAATTGACTGATCACTGAAGTGCTTGGCAATAT CATTGACGAGGAGACAACAATCTTTTTACAAGTTGTTTTATTACCAGGAA TAACTTCATATCCGTCTCTACAAACACATTGGAAATGTGACCCTTGTCCT GGTGTTGGTCGACACACAGTTGATTGAAGGTTGCAGTTGTGATCACCAGA TGCACAGAAATCTAAACATTTGTTGATTGAGTTTCCTTCTTTCAAATACC CCGGCTTGCAAGTACAATTGTGGTAAGGATTTGTAAGAGTGTTGTTACAA GATGATGTTGTCTTGTTGCAAGTATCGTCTCCCGTGTCACAAGGTCTTGG AATCGGTGTACAACTGTCCGTGTCATTTCCTAATCTTTCAAAACCATCTT TGCAAGGACATTCGTAATGTCGCCCTTTGCCAGGAGTAGACAAGCATGTT GTAGATACATCGTTGCAAGTATCAGCCTCAATGCGACAATACTCATGACA TTGATCCAAGGAGTTGTTAAACTTCAAATAACCATCTTCACAGGTACAAT TGTAGTAGAAAGGAGCTTCGAAGGTGTTTGTACAGTTGGATGAAGTTTTA TTACAAGTATCTTTCCCTGTGTCACAAGGTCTTGGCATCGGCGTACATTT GTCCATGTTGTTGTCGAGTCTCTCAAAGCCATGTTTACATGGACATTCGT AGTGTCGTCCTTTGCCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTG CAGGTATCAGCCTCAATACGACAATACTCATGACATTGATCCAAGGAGCT GTTAAACTTCAAATAACCAGCTTCACAGGTACAATTGTAGTAGAAAGGAG CTTCGAAGCTGTTTGTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTC CCTGTGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTTATC TAATCTCTCGAAACCAAATTTACATGGACATTCATAATGTCGTCCTTTAC CAGGAGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCA ATATGACAGTAGTCTTGACAATCATCAACGGAGTTGTTGAATTTGAGATA ACCATCACCACACGAGCAGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTG TGCAATTGGATCTTGTCTTGTTACAAGTATCTTTCCCTGTGTCACAAGGT CTTGGCATCGGCGTACATTTGTCCATGTTGTTGTCGAGTCTCTCAAAGCC ATGTTTACATGGACATTCGTAGTGTCGTCCTTTGCCAGGAGTAGACATAC AAGTTGTAGAGGTTGTATTGCAGGTATCAGCCTCAATACGACAATACTCA TGACATTGATCCAAGGAGCTGTTAAACTTCAAATAACCAGCTTCACAGGT ACAATTGTAGTAGAAAGGAGCTTCGAAGCTGTTTGTACAGTTGGATGAAG TTTTATTGCAAGTATCTTTCCCTGTGTCGCAAGGTCTTGGCATTGGTGTG CAACTGTCTGTGTTGTTATCTAATCTCTCGAAACCAAATTTACATGGACA TTCATAATGTCGTCCTTTACCAGGAGTTGCCTCACACATCGTTGAAGTTT TGTTGCAGGAATCAGCTTCAATATGACAGTAGTCTTGACAATCATCAACG GAGTTGTTGAATTTGAGATAACCATCACCACACGAGCAGTTGAAGTAAAC CGGAGCTGTCAAAGTGTTTGTGCAATTGGATCTTGTCTTGTTACAAGTAT CTTTCCCTGTGTCACAAGGTCTTGGCATCGGCGTACATTTGTCCATGTTG TTGTCGAGTCTCTCAAAGCCATGTTTACATGGACATTCGTAGTGTCGTCC TTTGCCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTGCAGGTATCAG CCTCAATACGACAATACTCATGACATTGATCCAAGGAGCTGTTAAACTTC AAATAACCAGCTTCACAGGTACAATTGTAGTAGAAAGGAGCTTCGAAGCT GTTTGTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTCCCTGTGTCGC AAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTTATCTAATCTCTCG AAACCAAATTTACATGGACATTCATAATGTCGTCCTTTACCAGGAGTTGC CTCACACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCAATATGACAGT AGTCTTGACAATCATCAACGGAGTTGTTGAATTTGAGATAACCATCACCA CACGAGCAGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTGTGCAATTGGA TCTTGTCTTGTTACAAGTATCTTTCCCTGTGTCACAAGGTCTTGGCATCG GCGTACATTTGTCCATGTTGTTGTCGAGTCTCTCAAAGCCATGTTTACAT GGACATTCGTAGTGTCGTCCTTTGCCAGGAGTAGACATACAAGTTGTAGA GGTTGTATTGCAGGTATCAGCCTCAATACGACAATACTCATGACATTGAT CCAAGGAGCTGTTAAACTTCAAATAACCAGCTTCACAGGTACAATTGTAG TAGAAAGGAGCTTCGAAGCTGTTTGTACAGTTGGATGAAGTTTTATTGCA AGTATCTTTCCCTGTGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTG TGTTGTTATCTAATCTCTCGAAACCAAATTTACATGGACATTCATAATGT CGTCCTTTACCAGGAGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGA ATCAGCTTCAATATGACAGTAGTCTTGACAATCATCAACGGAGTTGTTGA ATTTGAGATAACCATCACCACACGAGCAGTTGAAGTAAACCGGAGCTGTC AAAGTGTTTGTGCAATTGGATCTTGTCTTGTTACAAGTATCTTTCCCTGT GTCACAAGGTCTTGGCATCGGCGTACATTTGTCCATGTTGTTGTCGAGTC TCTCAAAGCCATGTTTACATGGACATTCGTAGTGTCGTCCTTTGCCAGGA GTAGACATACAAGTTGTAGAGGTTGTATTGCAGGTATCAGCCTCAATACG ACAATACTCATGACATTGATCCAAGGAGCTGTTAAACTTCAAATAACCAG CTTCACAGGTACAATTGTAGTAGAAAGGAGCTTCGAAGCTGTTTGTACAG TTGGATGAAGTTTTATTGCAAGTATCTTTCCCTGTGTCGCAAGGTCTTGG CATTGGTGTGCAACTGTCTGTGTTGTAATCTAATCTCTCGAAACCAAATT TACATGGACATTCATAATGTCGTCCTTTACGAGGAGTTGCCTCACACATC GTTGAAGTTTTGTTGCAGGAATCAGCTTCAATATGACAGTAGTCTTGACA ATCATCAACTGAGTTGTTGAATTTGAGATAACCATCACCACACGAGCAGT TGTAGTAAACCGGAGCTGTCAAAGTGTTTGTGCAATTGGATCTTGTCTTA TTACAAGTATCTTTCCCTGTGTCACAAGGCCTTGGCATCGGCGTACATTT GTCCATGTTGTTATCGAGTCTCTCAAAGCCAAGTTTACATGGGCATTCGT AGTGTCGTCCTTTGCCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTG CAAGTATCAGCCTCAATACGACAATACTCATGACATTGATCCAAGGAGTT GTTAAACTTCAAATAACCATCTTCACAGGTACAATTGTAGTAGAAAGGAG CTTCGAAGCTGTTTGTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTC CCTGTGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTTATC TAATCTCTCGAAACCAAATTTACATGGACATTCATAATGTCGTCCTTTGC CAGGAGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCA ATATGACAGTAGTCTTGACAATCATCAACTGAGTTGTTGAATTTGAGATA ACCATCACCACACGAGCAGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTG TGCAATTGGATCGTGTCTTGTTACAAGTATCTTTCCCTGTATCACAAGGT CTTGGCATCGGTGTACATGAGTCCGTGTTGTTATCGAGTCTCTCAAATCC ATGTTTACAAGGACATTCGTAATGCCGCCCTTTACCAGGTGTCGCCAAAC ACGTCGTTGATGTGTCGTTACATGTGTCGGAGTTATCAACGCAAAAGTCG AAACATGTCGTATGATTTTGTTTGACATATCCGGCTGAACAGTTACAGTC AAAGTAGTTTGGATGCGTGTAAGTATCGATACATGTTGATATATCTTTAT CACAAGTATCATTTCCCCAAGCACATGGAGTATCGGCTAGTGTGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00041494TCONS_00041494Clytia hemisphaericatranscript
TCONS_00041495TCONS_00041495Clytia hemisphaericatranscript
TCONS_00041496TCONS_00041496Clytia hemisphaericatranscript
TCONS_00041497TCONS_00041497Clytia hemisphaericatranscript
TCONS_00041498TCONS_00041498Clytia hemisphaericatranscript
TCONS_00041499TCONS_00041499Clytia hemisphaericatranscript
TCONS_00041500TCONS_00041500Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002895supercontigsc0002895:16457..22401 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
SCARF2scavenger receptor class F member 2 isoform 1 precursor Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.12 8.19 4.31 2.24 12.02 6.36 3.66 4.22 0.93 2.22 2.48 1.83 0.12 0.2 0.05 0.25 7.4 6.95 0.14 0.2 15.09 12.96 4.21 6.63 4 3.31 3.6 0.85 1.01 0.64