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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041495 ID=TCONS_00041495|Name=TCONS_00041495|organism=Clytia hemisphaerica|type=transcript|length=3515bp
NGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGGTGTTGTCT
TTGTTTCTGTCGGTTGCACGACTTCAGTCTGTGTCACTGGTGATTGGACA
ACTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGCTGCAC
GACTTCTGTCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTA
TCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGTCACT
GGTGGCTGAACAACTTTGGTTGTAGCGACTATCGGTGTTGTCTTTGTTTC
TGTCGCTTGTACGACTTCTGTCTGGCTAACTGAAGGTTGCACGACCTCTG
TCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGGTGTT
GTCTTTGTTTCTGTCGGTTGCACGACTTCTGTCTGGGTCACTGGTGGCTG
AACAACTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGTT
GCACGACCTCTGTCTGGGTCACTGGTGGCTGAACAACTTTGGTTGTAGCA
ACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGT
CACTGGTGGCTGAACAACTTTGGTTGTAGCAACTATCGGTGTTGTCTTTG
TTTCTGTCGGTTGCACGACTTCTGTCTGTGTCACTGGTGGCTGAACAACT
TCAGTTGTAGCAACTATTGGTGTTGTCCTTGTTTCTGTCGGTTGCACGAC
TTCAGTCTGTGTCACTGGTGGTTGGACAAGTTCGGTTGTAGCAACTATCG
GTGTTGTCTTTGCTTCTGTCGGTTGCACGACTTCAGTCTGTGTCACTGGT
GGCTGAATAACTTCAGTTGTAGCAACTATCGGTGTTGTCTTTGTCTCTGA
AGGTTGCACGACTTCTGTCTGACTGACTGAAGGTTGTACGACTACAGTTC
CGGTTGCTGGTGGCTGAACAACTTCGGTTGTAGCAACTATCGGTGTTGTC
TTTGTCTCTGAAGGTTGCACGACTTCTGTCTGACTGACTGAAGGTTGTAC
GACTACAGTTCCGGTTGCTGGTGGCTGAACAACTTCGGTTGTAGCAACTA
TCGGTGTCGTCTTTGTTTCTGTTAGTTGCACGACAGTTGTTTGGGGGCCA
GGCTGCTCAACAAAACTGGTCGTAGGAGTGGCTAATTGACTGATCACTGA
AGTGCTTGGCAATATCATTGACGAGGAGACAACAATCTTTTTACAAGTTG
TTTTATTACCAGGAATAACTTCATATCCGTCTCTACAAACACATTGGAAA
TGTGACCCTTGTCCTGGTGTTGGTCGACACACAGTTGATTGAAGGTTGCA
GTTGTGATCACCAGATGCACAGAAATCTAAACATTTGTTGATTGAGTTTC
CTTCTTTCAAATACCCCGGCTTGCAAGTACAATTGTGGTAAGGATTTGTA
AGAGTGTTGTTACAAGATGATGTTGTCTTGTTGCAAGTATCGTCTCCCGT
GTCACAAGGTCTTGGAATCGGTGTACAACTGTCCGTGTCATTTCCTAATC
TTTCAAAACCATCTTTGCAAGGACATTCGTAATGTCGCCCTTTGCCAGGA
GTAGACAAGCATGTTGTAGATACATCGTTGCAAGTATCAGCCTCAATGCG
ACAATACTCATGACATTGATCCAAGGAGTTGTTAAACTTCAAATAACCAT
CTTCACAGGTACAATTGTAGTAGAAAGGAGCTTCGAAGGTGTTTGTACAG
TTGGATGAAGTTTTATTACAAGTATCTTTCCCTGTGTCACAAGGTCTTGG
CATCGGCGTACATTTGTCCATGTTGTTGTCGAGTCTCTCAAAGCCATGTT
TACATGGACATTCGTAGTGTCGTCCTTTGCCAGGAGTAGACATACAAGTT
GTAGAGGTTGTATTGCAGGTATCAGCCTCAATACGACAATACTCATGACA
TTGATCCAAGGAGCTGTTAAACTTCAAATAACCAGCTTCACAGGTACAAT
TGTAGTAGAAAGGAGCTTCGAAGCTGTTTGTACAGTTGGATGAAGTTTTA
TTGCAAGTATCTTTCCCTGTGTCGCAAGGTCTTGGCATCGGCGTACATTT
GTCCATGTTGTTGTCGAGTCTCTCAAAGCCATGTTTACATGGACATTCGT
AGTGTCGTCCTTTGCCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTG
CAGGTATCAGCCTCAATACGACAATACTCATGACATTGATCCAAGGAGCT
GTTAAACTTCAAATAACCAGCTTCACAGGTACAATTGTAGTAGAAAGGAG
CTTCGAAGCTGTTTGTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTC
CCTGTGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTAATC
TAATCTCTCGAAACCAAATTTACATGGACATTCATAATGTCGTCCTTTAC
GAGGAGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCA
ATATGACAGTAGTCTTGACAATCATCAACTGAGTTGTTGAATTTGAGATA
ACCATCACCACACGAGCAGTTGTAGTAAACCGGAGCTGTCAAAGTGTTTG
TGCAATTGGATCTTGTCTTATTACAAGTATCTTTCCCTGTGTCACAAGGC
CTTGGCATCGGCGTACATTTGTCCATGTTGTTATCGAGTCTCTCAAAGCC
AAGTTTACATGGGCATTCGTAGTGTCGTCCTTTGCCAGGAGTAGACATAC
AAGTTGTAGAGGTTGTATTGCAAGTATCAGCCTCAATACGACAATACTCA
TGACATTGATCCAAGGAGTTGTTAAACTTCAAATAACCATCTTCACAGGT
ACAATTGTAGTAGAAAGGAGCTTCGAAGCTGTTTGTACAGTTGGATGAAG
TTTTATTGCAAGTATCTTTCCCTGTGTCGCAAGGTCTTGGCATTGGTGTG
CAACTGTCTGTGTTGTTATCTAATCTCTCGAAACCAAATTTACATGGACA
TTCATAATGTCGTCCTTTGCCAGGAGTTGCCTCACACATCGTTGAAGTTT
TGTTGCAGGAATCAGCTTCAATATGACAGTAGTCTTGACAATCATCAACT
GAGTTGTTGAATTTGAGATAACCATCACCACACGAGCAGTTGAAGTAAAC
CGGAGCTGTCAAAGTGTTTGTGCAATTGGATCGTGTCTTGTTACAAGTAT
CTTTCCCTGTATCACAAGGTCTTGGCATCGGTGTACATGAGTCCGTGTTG
TTATCGAGTCTCTCAAATCCATGTTTACAAGGACATTCGTAATGCCGCCC
TTTACCAGGTGTCGCCAAACACGTCGTTGATGTGTCGTTACATGTGTCGG
AGTTATCAACGCAAAAGTCGAAACATGTCGTATGATTTTGTTTGACATAT
CCGGCTGAACAGTTACAGTCAAAGTAGTTTGGATGCGTGTAAGTATCGAT
ACATGTTGATATATCTTTATCACAAGTATCATTTCCCCAAGCACATGGAG
TATCGGCTAGTGTGC Run BLAST on NCBI transcript from alignment at sc0002895:16457..22401+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041495 ID=TCONS_00041495|Name=TCONS_00041495|organism=Clytia hemisphaerica|type=transcript|length=5945bp|location=Sequence derived from alignment at sc0002895:16457..22401+ (Clytia hemisphaerica)
NGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGGTGTTGTCT
TTGTTTCTGTCGGTTGCACGACTTCAGTCTGTGTCACTGGTGATTGGACA
ACTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGCTGCAC
GACTTCTGTCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTA
TCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGTCACT
GGTGGCTGAACAACTTTGGTTGTAGCGACTATCGGTGTTGTCTTTGTTTC
TGTCGCTTGTACGACTTCTGTCTGGCTAACTGAAGGTTGCACGACCTCTG
TCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGGTGTT
GTCTTTGTTTCTGTCGGTTGCACGACATCTGTCTGGGTCACTGGTGGCTG
AACAACTTCAGTTGTAGCGACTATCGGTGTTGTCTTTGTTTCTGTCGGTT
GCACGACTTCTGTCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCA
ACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGT
CACTGGTGGCTGAACAACTTTGGTTGTAGCGACTATCGGTGTTGTCTTTG
TTTCTGTCGCTTGTACGACTTCTGTCTGGCTAACTGAAGGTTGCACGACC
TCTGTCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGG
TGTTGTCTTTGTTTCTGTCGGTTGCACGACATCTGTCTGGGTCACTGGTG
GCTGAACAACTTTGGTTGTAGCAACTATTGGTGTTGTCTTTGTTTCTGTC
GGTTGCACGACTTCTGTCTGGGTCACTGGTGGCTGAACAACTTCGGTTGT
AGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCT
GGGTCACTGGTGGCTGAACAACTTTGGTTGTAGCAACTATCGGTGTTGTC
TTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGTCACTGGTGGCTGAAC
AACTTTGGTTGTAGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCA
CGACTTCTGTCTGTGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACT
ATTGGTGTTGTCCTTGTTTCTGTCGGTTGCACGACTTCAGTCTGTGTCAC
TGGTGGTTGGACAAGTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGCTT
CTGTCGGTTGCACGACTTCAGTCTGTGTCACTGGTGGCTGAATAACTTCA
GTTGTAGCAACTATCGGTGTTGTCTTTGTCTCTGAAGGTTGCACGACTTC
TGTCTGACTGACTGAAGGTTGTACGACTACAGTTCCGGTTGCTGGTGGCT
GAACAACTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGTCTCTGAAGGT
TGCACGACTTCTGTCTGACTGACTGAAGGTTGTACGACTACAGTTCCGGT
TGCTGGTGGCTGAACAACTTCGGTTGTAGCAACTATCGGTGTCGTCTTTG
TTTCTGTTAGTTGCACGACAGTTGTTTGGGGGCCAGGCTGCTCAACAAAA
CTGGTCGTAGGAGTGGCTAATTGACTGATCACTGAAGTGCTTGGCAATAT
CATTGACGAGGAGACAACAATCTTTTTACAAGTTGTTTTATTACCAGGAA
TAACTTCATATCCGTCTCTACAAACACATTGGAAATGTGACCCTTGTCCT
GGTGTTGGTCGACACACAGTTGATTGAAGGTTGCAGTTGTGATCACCAGA
TGCACAGAAATCTAAACATTTGTTGATTGAGTTTCCTTCTTTCAAATACC
CCGGCTTGCAAGTACAATTGTGGTAAGGATTTGTAAGAGTGTTGTTACAA
GATGATGTTGTCTTGTTGCAAGTATCGTCTCCCGTGTCACAAGGTCTTGG
AATCGGTGTACAACTGTCCGTGTCATTTCCTAATCTTTCAAAACCATCTT
TGCAAGGACATTCGTAATGTCGCCCTTTGCCAGGAGTAGACAAGCATGTT
GTAGATACATCGTTGCAAGTATCAGCCTCAATGCGACAATACTCATGACA
TTGATCCAAGGAGTTGTTAAACTTCAAATAACCATCTTCACAGGTACAAT
TGTAGTAGAAAGGAGCTTCGAAGGTGTTTGTACAGTTGGATGAAGTTTTA
TTACAAGTATCTTTCCCTGTGTCACAAGGTCTTGGCATCGGCGTACATTT
GTCCATGTTGTTGTCGAGTCTCTCAAAGCCATGTTTACATGGACATTCGT
AGTGTCGTCCTTTGCCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTG
CAGGTATCAGCCTCAATACGACAATACTCATGACATTGATCCAAGGAGCT
GTTAAACTTCAAATAACCAGCTTCACAGGTACAATTGTAGTAGAAAGGAG
CTTCGAAGCTGTTTGTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTC
CCTGTGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTTATC
TAATCTCTCGAAACCAAATTTACATGGACATTCATAATGTCGTCCTTTAC
CAGGAGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCA
ATATGACAGTAGTCTTGACAATCATCAACGGAGTTGTTGAATTTGAGATA
ACCATCACCACACGAGCAGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTG
TGCAATTGGATCTTGTCTTGTTACAAGTATCTTTCCCTGTGTCACAAGGT
CTTGGCATCGGCGTACATTTGTCCATGTTGTTGTCGAGTCTCTCAAAGCC
ATGTTTACATGGACATTCGTAGTGTCGTCCTTTGCCAGGAGTAGACATAC
AAGTTGTAGAGGTTGTATTGCAGGTATCAGCCTCAATACGACAATACTCA
TGACATTGATCCAAGGAGCTGTTAAACTTCAAATAACCAGCTTCACAGGT
ACAATTGTAGTAGAAAGGAGCTTCGAAGCTGTTTGTACAGTTGGATGAAG
TTTTATTGCAAGTATCTTTCCCTGTGTCGCAAGGTCTTGGCATTGGTGTG
CAACTGTCTGTGTTGTTATCTAATCTCTCGAAACCAAATTTACATGGACA
TTCATAATGTCGTCCTTTACCAGGAGTTGCCTCACACATCGTTGAAGTTT
TGTTGCAGGAATCAGCTTCAATATGACAGTAGTCTTGACAATCATCAACG
GAGTTGTTGAATTTGAGATAACCATCACCACACGAGCAGTTGAAGTAAAC
CGGAGCTGTCAAAGTGTTTGTGCAATTGGATCTTGTCTTGTTACAAGTAT
CTTTCCCTGTGTCACAAGGTCTTGGCATCGGCGTACATTTGTCCATGTTG
TTGTCGAGTCTCTCAAAGCCATGTTTACATGGACATTCGTAGTGTCGTCC
TTTGCCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTGCAGGTATCAG
CCTCAATACGACAATACTCATGACATTGATCCAAGGAGCTGTTAAACTTC
AAATAACCAGCTTCACAGGTACAATTGTAGTAGAAAGGAGCTTCGAAGCT
GTTTGTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTCCCTGTGTCGC
AAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTTATCTAATCTCTCG
AAACCAAATTTACATGGACATTCATAATGTCGTCCTTTACCAGGAGTTGC
CTCACACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCAATATGACAGT
AGTCTTGACAATCATCAACGGAGTTGTTGAATTTGAGATAACCATCACCA
CACGAGCAGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTGTGCAATTGGA
TCTTGTCTTGTTACAAGTATCTTTCCCTGTGTCACAAGGTCTTGGCATCG
GCGTACATTTGTCCATGTTGTTGTCGAGTCTCTCAAAGCCATGTTTACAT
GGACATTCGTAGTGTCGTCCTTTGCCAGGAGTAGACATACAAGTTGTAGA
GGTTGTATTGCAGGTATCAGCCTCAATACGACAATACTCATGACATTGAT
CCAAGGAGCTGTTAAACTTCAAATAACCAGCTTCACAGGTACAATTGTAG
TAGAAAGGAGCTTCGAAGCTGTTTGTACAGTTGGATGAAGTTTTATTGCA
AGTATCTTTCCCTGTGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTG
TGTTGTTATCTAATCTCTCGAAACCAAATTTACATGGACATTCATAATGT
CGTCCTTTACCAGGAGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGA
ATCAGCTTCAATATGACAGTAGTCTTGACAATCATCAACGGAGTTGTTGA
ATTTGAGATAACCATCACCACACGAGCAGTTGAAGTAAACCGGAGCTGTC
AAAGTGTTTGTGCAATTGGATCTTGTCTTGTTACAAGTATCTTTCCCTGT
GTCACAAGGTCTTGGCATCGGCGTACATTTGTCCATGTTGTTGTCGAGTC
TCTCAAAGCCATGTTTACATGGACATTCGTAGTGTCGTCCTTTGCCAGGA
GTAGACATACAAGTTGTAGAGGTTGTATTGCAGGTATCAGCCTCAATACG
ACAATACTCATGACATTGATCCAAGGAGCTGTTAAACTTCAAATAACCAG
CTTCACAGGTACAATTGTAGTAGAAAGGAGCTTCGAAGCTGTTTGTACAG
TTGGATGAAGTTTTATTGCAAGTATCTTTCCCTGTGTCGCAAGGTCTTGG
CATTGGTGTGCAACTGTCTGTGTTGTAATCTAATCTCTCGAAACCAAATT
TACATGGACATTCATAATGTCGTCCTTTACGAGGAGTTGCCTCACACATC
GTTGAAGTTTTGTTGCAGGAATCAGCTTCAATATGACAGTAGTCTTGACA
ATCATCAACTGAGTTGTTGAATTTGAGATAACCATCACCACACGAGCAGT
TGTAGTAAACCGGAGCTGTCAAAGTGTTTGTGCAATTGGATCTTGTCTTA
TTACAAGTATCTTTCCCTGTGTCACAAGGCCTTGGCATCGGCGTACATTT
GTCCATGTTGTTATCGAGTCTCTCAAAGCCAAGTTTACATGGGCATTCGT
AGTGTCGTCCTTTGCCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTG
CAAGTATCAGCCTCAATACGACAATACTCATGACATTGATCCAAGGAGTT
GTTAAACTTCAAATAACCATCTTCACAGGTACAATTGTAGTAGAAAGGAG
CTTCGAAGCTGTTTGTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTC
CCTGTGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTTATC
TAATCTCTCGAAACCAAATTTACATGGACATTCATAATGTCGTCCTTTGC
CAGGAGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCA
ATATGACAGTAGTCTTGACAATCATCAACTGAGTTGTTGAATTTGAGATA
ACCATCACCACACGAGCAGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTG
TGCAATTGGATCGTGTCTTGTTACAAGTATCTTTCCCTGTATCACAAGGT
CTTGGCATCGGTGTACATGAGTCCGTGTTGTTATCGAGTCTCTCAAATCC
ATGTTTACAAGGACATTCGTAATGCCGCCCTTTACCAGGTGTCGCCAAAC
ACGTCGTTGATGTGTCGTTACATGTGTCGGAGTTATCAACGCAAAAGTCG
AAACATGTCGTATGATTTTGTTTGACATATCCGGCTGAACAGTTACAGTC
AAAGTAGTTTGGATGCGTGTAAGTATCGATACATGTTGATATATCTTTAT
CACAAGTATCATTTCCCCAAGCACATGGAGTATCGGCTAGTGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041495-exon-sc0002895-1491911889:16457..16882 | TCONS_00041495-exon-sc0002895-1491911889:16457..16882 | Clytia hemisphaerica | exon |
| TCONS_00041495-exon-sc0002895-1510915933:16457..16882 | TCONS_00041495-exon-sc0002895-1510915933:16457..16882 | Clytia hemisphaerica | exon |
| TCONS_00041495-exon-sc0002895-1575043694:16457..16882 | TCONS_00041495-exon-sc0002895-1575043694:16457..16882 | Clytia hemisphaerica | exon |
| TCONS_00041495-exon-sc0002895-1491911889:17318..18969 | TCONS_00041495-exon-sc0002895-1491911889:17318..18969 | Clytia hemisphaerica | exon |
| TCONS_00041495-exon-sc0002895-1510915933:17318..18969 | TCONS_00041495-exon-sc0002895-1510915933:17318..18969 | Clytia hemisphaerica | exon |
| TCONS_00041495-exon-sc0002895-1575043694:17318..18969 | TCONS_00041495-exon-sc0002895-1575043694:17318..18969 | Clytia hemisphaerica | exon |
| TCONS_00041495-exon-sc0002895-1491911889:20965..22401 | TCONS_00041495-exon-sc0002895-1491911889:20965..22401 | Clytia hemisphaerica | exon |
| TCONS_00041495-exon-sc0002895-1510915933:20965..22401 | TCONS_00041495-exon-sc0002895-1510915933:20965..22401 | Clytia hemisphaerica | exon |
| TCONS_00041495-exon-sc0002895-1575043694:20965..22401 | TCONS_00041495-exon-sc0002895-1575043694:20965..22401 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002895 | supercontig | sc0002895:16457..22401 + |
Blast
The following BLAST results are available for this feature:
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