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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041500 ID=TCONS_00041500|Name=TCONS_00041500|organism=Clytia hemisphaerica|type=transcript|length=3820bp
TCTGTCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGG
TGTTGTCTTTGTTTCTGTCGGTTGCACGACATCTGTCTGGGTCACTGGTG
GCTGAACAACTTTGGTTGTAGCAACTATTGGTGTTGTCTTTGTTTCTGTC
GGTTGCACGACTTCTGTCTGGGTCACTGGTGGCTGAACAACTTCGGTTGT
AGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCT
GGGTCACTGGTGGCTGAACAACTTTGGTTGTAGCAACTATCGGTGTTGTC
TTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGTCACTGGTGGCTGAAC
AACTTTGGTTGTAGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCA
CGACTTCTGTCTGTGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACT
ATTGGTGTTGTCCTTGTTTCTGTCGGTTGCACGACTTCAGTCTGTGTCAC
TGGTGGTTGGACAAGTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGCTT
CTGTCGGTTGCACGACTTCAGTCTGTGTCACTGGTGGCTGAATAACTTCA
GTTGTAGCAACTATCGGTGTTGTCTTTGTCTCTGAAGGTTGCACGACTTC
TGTCTGACTGACTGAAGGTTGTACGACTACAGTTCCGGTTGCTGGTGGCT
GAACAACTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGTCTCTGAAGGT
TGCACGACTTCTGTCTGACTGACTGAAGGTTGTACGACTACAGTTCCGGT
TGCTGGTGGCTGAACAACTTCGGTTGTAGCAACTATCGGTGTCGTCTTTG
TTTCTGTTAGTTGCACGACAGTTGTTTGGGGGCCAGGCTGCTCAACAAAA
CTGGTCGTAGGAGTGGCTAATTGACTGATCACTGAAGTGCTTGGCAATAT
CATTGACGAGGAGACAACAATCTTTTTACAAGTTGTTTTATTACCAGGAA
TAACTTCATATCCGTCTCTACAAACACATTGGAAATGTGACCCTTGTCCT
GGTGTTGGTCGACACACAGTTGATTGAAGGTTGCAGTTGTGATCACCAGA
TGCACAGAAATCTAAACATTTGTTGATTGAGTTTCCTTCTTTCAAATACC
CCGGCTTGCAAGTACAATTGTGGTAAGGATTTGTAAGAGTGTTGTTACAA
GATGATGTTGTCTTGTTGCAAGTATCGTCTCCCGTGTCACAAGGTCTTGG
AATCGGTGTACAACTGTCCGTGTCATTTCCTAATCTTTCAAAACCATCTT
TGCAAGGACATTCGTAATGTCGCCCTTTGCCAGGAGTAGACAAGCATGTT
GTAGATACATCGTTGCAAGTATCAGCCTCAATGCGACAATACTCATGACA
TTGATCCAAGGAGTTGTTAAACTTCAAATAACCATCTTCACAGGTACAAT
TGTAGTAGAAAGGAGCTTCGAAGGTGTTTGTACAGTTGGATGAAGTTTTA
TTACAAGTATCTTTCCCTGTGTCACAAGGTCTTGGCATCGGCGTACATTT
GTCCATGTTGTTGTCGAGTCTCTCAAAGCCATGTTTACATGGACATTCGT
AGTGTCGTCCTTTGCCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTG
CAGGTATCAGCCTCAATACGACAATACTCATGACATTGATCCAAGGAGCT
GTTAAACTTCAAATAACCAGCTTCACAGGTACAATTGTAGTAGAAAGGAG
CTTCGAAGCTGTTTGTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTC
CCTGTGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTTATC
TAATCTCTCGAAACCAAATTTACATGGACATTCATAATGTCGTCCTTTAC
CAGGAGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCA
ATATGACAGTAGTCTTGACAATCATCAACGGAGTTGTTGAATTTGAGATA
ACCATCACCACACGAGCAGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTG
TGCAATTGGATCTTGTCTTGTTACAAGTATCTTTCCCTGTGTCACAAGGT
CTTGGCATCGGCGTACATTTGTCCATGTTGTTGTCGAGTCTCTCAAAGCC
ATGTTTACATGGACATTCGTAGTGTCGTCCTTTGCCAGGAGTAGACATAC
AAGTTGTAGAGGTTGTATTGCAGGTATCAGCCTCAATACGACAATACTCA
TGACATTGATCCAAGGAGCTGTTAAACTTCAAATAACCAGCTTCACAGGT
ACAATTGTAGTAGAAAGGAGCTTCGAAGCTGTTTGTACAGTTGGATGAAG
TTTTATTGCAAGTATCTTTCCCTGTGTCGCAAGGTCTTGGCATTGGTGTG
CAACTGTCTGTGTTGTTATCTAATCTCTCGAAACCAAATTTACATGGACA
TTCATAATGTCGTCCTTTACCAGGAGTTGCCTCACACATCGTTGAAGTTT
TGTTGCAGGAATCAGCTTCAATATGACAGTAGTCTTGACAATCATCAACG
GAGTTGTTGAATTTGAGATAACCATCACCACACGAGCAGTTGAAGTAAAC
CGGAGCTGTCAAAGTGTTTGTGCAATTGGATCTTGTCTTGTTACAAGTAT
CTTTCCCTGTGTCACAAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTG
TAATCTAATCTCTCGAAACCAAATTTACATGGACATTCATAATGTCGTCC
TTTACGAGGAGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGAATCAG
CTTCAATATGACAGTAGTCTTGACAATCATCAACTGAGTTGTTGAATTTG
AGATAACCATCACCACACGAGCAGTTGTAGTAAACCGGAGCTGTCAAAGT
GTTTGTGCAATTGGATCTTGTCTTATTACAAGTATCTTTCCCTGTGTCAC
AAGGCCTTGGCATCGGCGTACATTTGTCCATGTTGTTATCGAGTCTCTCA
AAGCCAAGTTTACATGGGCATTCGTAGTGTCGTCCTTTGCCAGGAGTAGA
CATACAAGTTGTAGAGGTTGTATTGCAAGTATCAGCCTCAATACGACAAT
ACTCATGACATTGATCCAAGGAGTTGTTAAACTTCAAATAACCATCTTCA
CAGGTACAATTGTAGTAGAAAGGAGCTTCGAAGCTGTTTGTACAGTTGGA
TGAAGTTTTATTGCAAGTATCTTTCCCTGTGTCGCAAGGTCTTGGCATTG
GTGTGCAACTGTCTGTGTTGTTATCTAATCTCTCGAAACCAAATTTACAT
GGACATTCATAATGTCGTCCTTTGCCAGGAGTTGCCTCACACATCGTTGA
AGTTTTGTTGCAGGAATCAGCTTCAATATGACAGTAGTCTTGACAATCAT
CAACTGAGTTGTTGAATTTGAGATAACCATCACCACACGAGCAGTTGAAG
TAAACCGGAGCTGTCAAAGTGTTTGTGCAATTGGATCGTGTCTTGTTACA
AGTATCTTTCCCTGTATCACAAGGTCTTGGCATCGGTGTACATGAGTCCG
TGTTGTTATCGAGTCTCTCAAATCCATGTTTACAAGGACATTCGTAATGC
CGCCCTTTACCAGGTGTCGCCAAACACGTCGTTGATGTGTCGTTACATGT
GTCGGAGTTATCAACGCAAAAGTCGAAACATGTCGTATGATTTTGTTTGA
CATATCCGGCTGAACAGTTACAGTCAAAGTAGTTTGGATGCGTGTAAGTA
TCGATACATGTTGATATATCTTTATCACAAGTATCATTTCCCCAAGCACA
TGGAGTATCGGCTAGTGTGC Run BLAST on NCBI transcript from alignment at sc0002895:17157..22401+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041500 ID=TCONS_00041500|Name=TCONS_00041500|organism=Clytia hemisphaerica|type=transcript|length=5245bp|location=Sequence derived from alignment at sc0002895:17157..22401+ (Clytia hemisphaerica)
TCTGTCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGG
TGTTGTCTTTGTTTCTGTCGGTTGCACGACATCTGTCTGGGTCACTGGTG
GCTGAACAACTTTGGTTGTAGCAACTATTGGTGTTGTCTTTGTTTCTGTC
GGTTGCACGACTTCTGTCTGGGTCACTGGTGGCTGAACAACTTCGGTTGT
AGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCT
GGGTCACTGGTGGCTGAACAACTTTGGTTGTAGCAACTATCGGTGTTGTC
TTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGTCACTGGTGGCTGAAC
AACTTTGGTTGTAGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCA
CGACTTCTGTCTGTGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACT
ATTGGTGTTGTCCTTGTTTCTGTCGGTTGCACGACTTCAGTCTGTGTCAC
TGGTGGTTGGACAAGTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGCTT
CTGTCGGTTGCACGACTTCAGTCTGTGTCACTGGTGGCTGAATAACTTCA
GTTGTAGCAACTATCGGTGTTGTCTTTGTCTCTGAAGGTTGCACGACTTC
TGTCTGACTGACTGAAGGTTGTACGACTACAGTTCCGGTTGCTGGTGGCT
GAACAACTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGTCTCTGAAGGT
TGCACGACTTCTGTCTGACTGACTGAAGGTTGTACGACTACAGTTCCGGT
TGCTGGTGGCTGAACAACTTCGGTTGTAGCAACTATCGGTGTCGTCTTTG
TTTCTGTTAGTTGCACGACAGTTGTTTGGGGGCCAGGCTGCTCAACAAAA
CTGGTCGTAGGAGTGGCTAATTGACTGATCACTGAAGTGCTTGGCAATAT
CATTGACGAGGAGACAACAATCTTTTTACAAGTTGTTTTATTACCAGGAA
TAACTTCATATCCGTCTCTACAAACACATTGGAAATGTGACCCTTGTCCT
GGTGTTGGTCGACACACAGTTGATTGAAGGTTGCAGTTGTGATCACCAGA
TGCACAGAAATCTAAACATTTGTTGATTGAGTTTCCTTCTTTCAAATACC
CCGGCTTGCAAGTACAATTGTGGTAAGGATTTGTAAGAGTGTTGTTACAA
GATGATGTTGTCTTGTTGCAAGTATCGTCTCCCGTGTCACAAGGTCTTGG
AATCGGTGTACAACTGTCCGTGTCATTTCCTAATCTTTCAAAACCATCTT
TGCAAGGACATTCGTAATGTCGCCCTTTGCCAGGAGTAGACAAGCATGTT
GTAGATACATCGTTGCAAGTATCAGCCTCAATGCGACAATACTCATGACA
TTGATCCAAGGAGTTGTTAAACTTCAAATAACCATCTTCACAGGTACAAT
TGTAGTAGAAAGGAGCTTCGAAGGTGTTTGTACAGTTGGATGAAGTTTTA
TTACAAGTATCTTTCCCTGTGTCACAAGGTCTTGGCATCGGCGTACATTT
GTCCATGTTGTTGTCGAGTCTCTCAAAGCCATGTTTACATGGACATTCGT
AGTGTCGTCCTTTGCCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTG
CAGGTATCAGCCTCAATACGACAATACTCATGACATTGATCCAAGGAGCT
GTTAAACTTCAAATAACCAGCTTCACAGGTACAATTGTAGTAGAAAGGAG
CTTCGAAGCTGTTTGTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTC
CCTGTGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTTATC
TAATCTCTCGAAACCAAATTTACATGGACATTCATAATGTCGTCCTTTAC
CAGGAGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCA
ATATGACAGTAGTCTTGACAATCATCAACGGAGTTGTTGAATTTGAGATA
ACCATCACCACACGAGCAGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTG
TGCAATTGGATCTTGTCTTGTTACAAGTATCTTTCCCTGTGTCACAAGGT
CTTGGCATCGGCGTACATTTGTCCATGTTGTTGTCGAGTCTCTCAAAGCC
ATGTTTACATGGACATTCGTAGTGTCGTCCTTTGCCAGGAGTAGACATAC
AAGTTGTAGAGGTTGTATTGCAGGTATCAGCCTCAATACGACAATACTCA
TGACATTGATCCAAGGAGCTGTTAAACTTCAAATAACCAGCTTCACAGGT
ACAATTGTAGTAGAAAGGAGCTTCGAAGCTGTTTGTACAGTTGGATGAAG
TTTTATTGCAAGTATCTTTCCCTGTGTCGCAAGGTCTTGGCATTGGTGTG
CAACTGTCTGTGTTGTTATCTAATCTCTCGAAACCAAATTTACATGGACA
TTCATAATGTCGTCCTTTACCAGGAGTTGCCTCACACATCGTTGAAGTTT
TGTTGCAGGAATCAGCTTCAATATGACAGTAGTCTTGACAATCATCAACG
GAGTTGTTGAATTTGAGATAACCATCACCACACGAGCAGTTGAAGTAAAC
CGGAGCTGTCAAAGTGTTTGTGCAATTGGATCTTGTCTTGTTACAAGTAT
CTTTCCCTGTGTCACAAGGTCTTGGCATCGGCGTACATTTGTCCATGTTG
TTGTCGAGTCTCTCAAAGCCATGTTTACATGGACATTCGTAGTGTCGTCC
TTTGCCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTGCAGGTATCAG
CCTCAATACGACAATACTCATGACATTGATCCAAGGAGCTGTTAAACTTC
AAATAACCAGCTTCACAGGTACAATTGTAGTAGAAAGGAGCTTCGAAGCT
GTTTGTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTCCCTGTGTCGC
AAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTTATCTAATCTCTCG
AAACCAAATTTACATGGACATTCATAATGTCGTCCTTTACCAGGAGTTGC
CTCACACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCAATATGACAGT
AGTCTTGACAATCATCAACGGAGTTGTTGAATTTGAGATAACCATCACCA
CACGAGCAGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTGTGCAATTGGA
TCTTGTCTTGTTACAAGTATCTTTCCCTGTGTCACAAGGTCTTGGCATCG
GCGTACATTTGTCCATGTTGTTGTCGAGTCTCTCAAAGCCATGTTTACAT
GGACATTCGTAGTGTCGTCCTTTGCCAGGAGTAGACATACAAGTTGTAGA
GGTTGTATTGCAGGTATCAGCCTCAATACGACAATACTCATGACATTGAT
CCAAGGAGCTGTTAAACTTCAAATAACCAGCTTCACAGGTACAATTGTAG
TAGAAAGGAGCTTCGAAGCTGTTTGTACAGTTGGATGAAGTTTTATTGCA
AGTATCTTTCCCTGTGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTG
TGTTGTTATCTAATCTCTCGAAACCAAATTTACATGGACATTCATAATGT
CGTCCTTTACCAGGAGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGA
ATCAGCTTCAATATGACAGTAGTCTTGACAATCATCAACGGAGTTGTTGA
ATTTGAGATAACCATCACCACACGAGCAGTTGAAGTAAACCGGAGCTGTC
AAAGTGTTTGTGCAATTGGATCTTGTCTTGTTACAAGTATCTTTCCCTGT
GTCACAAGGTCTTGGCATCGGCGTACATTTGTCCATGTTGTTGTCGAGTC
TCTCAAAGCCATGTTTACATGGACATTCGTAGTGTCGTCCTTTGCCAGGA
GTAGACATACAAGTTGTAGAGGTTGTATTGCAGGTATCAGCCTCAATACG
ACAATACTCATGACATTGATCCAAGGAGCTGTTAAACTTCAAATAACCAG
CTTCACAGGTACAATTGTAGTAGAAAGGAGCTTCGAAGCTGTTTGTACAG
TTGGATGAAGTTTTATTGCAAGTATCTTTCCCTGTGTCGCAAGGTCTTGG
CATTGGTGTGCAACTGTCTGTGTTGTAATCTAATCTCTCGAAACCAAATT
TACATGGACATTCATAATGTCGTCCTTTACGAGGAGTTGCCTCACACATC
GTTGAAGTTTTGTTGCAGGAATCAGCTTCAATATGACAGTAGTCTTGACA
ATCATCAACTGAGTTGTTGAATTTGAGATAACCATCACCACACGAGCAGT
TGTAGTAAACCGGAGCTGTCAAAGTGTTTGTGCAATTGGATCTTGTCTTA
TTACAAGTATCTTTCCCTGTGTCACAAGGCCTTGGCATCGGCGTACATTT
GTCCATGTTGTTATCGAGTCTCTCAAAGCCAAGTTTACATGGGCATTCGT
AGTGTCGTCCTTTGCCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTG
CAAGTATCAGCCTCAATACGACAATACTCATGACATTGATCCAAGGAGTT
GTTAAACTTCAAATAACCATCTTCACAGGTACAATTGTAGTAGAAAGGAG
CTTCGAAGCTGTTTGTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTC
CCTGTGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTTATC
TAATCTCTCGAAACCAAATTTACATGGACATTCATAATGTCGTCCTTTGC
CAGGAGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCA
ATATGACAGTAGTCTTGACAATCATCAACTGAGTTGTTGAATTTGAGATA
ACCATCACCACACGAGCAGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTG
TGCAATTGGATCGTGTCTTGTTACAAGTATCTTTCCCTGTATCACAAGGT
CTTGGCATCGGTGTACATGAGTCCGTGTTGTTATCGAGTCTCTCAAATCC
ATGTTTACAAGGACATTCGTAATGCCGCCCTTTACCAGGTGTCGCCAAAC
ACGTCGTTGATGTGTCGTTACATGTGTCGGAGTTATCAACGCAAAAGTCG
AAACATGTCGTATGATTTTGTTTGACATATCCGGCTGAACAGTTACAGTC
AAAGTAGTTTGGATGCGTGTAAGTATCGATACATGTTGATATATCTTTAT
CACAAGTATCATTTCCCCAAGCACATGGAGTATCGGCTAGTGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041500-exon-sc0002895-1491911889:17157..19824 | TCONS_00041500-exon-sc0002895-1491911889:17157..19824 | Clytia hemisphaerica | exon |
| TCONS_00041500-exon-sc0002895-1510915933:17157..19824 | TCONS_00041500-exon-sc0002895-1510915933:17157..19824 | Clytia hemisphaerica | exon |
| TCONS_00041500-exon-sc0002895-1575043694:17157..19824 | TCONS_00041500-exon-sc0002895-1575043694:17157..19824 | Clytia hemisphaerica | exon |
| TCONS_00041500-exon-sc0002895-1491911889:21250..22401 | TCONS_00041500-exon-sc0002895-1491911889:21250..22401 | Clytia hemisphaerica | exon |
| TCONS_00041500-exon-sc0002895-1510915933:21250..22401 | TCONS_00041500-exon-sc0002895-1510915933:21250..22401 | Clytia hemisphaerica | exon |
| TCONS_00041500-exon-sc0002895-1575043694:21250..22401 | TCONS_00041500-exon-sc0002895-1575043694:21250..22401 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002895 | supercontig | sc0002895:17157..22401 + |
Blast
The following BLAST results are available for this feature:
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