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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041497 ID=TCONS_00041497|Name=TCONS_00041497|organism=Clytia hemisphaerica|type=transcript|length=3584bp
NGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGGTGTTGTCT
TTGTTTCTGTCGGTTGCACGACTTCAGTCTGTGTCACTGGTGATTGGACA
ACTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGCTGCAC
GACTTCTGTCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTA
TCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGTCACT
GGTGGCTGAACAACTTTGGTTGTAGCGACTATCGGTGTTGTCTTTGTTTC
TGTCGCTTGTACGACTTCTGTCTGGCTAACTGAAGGTTGCACGACCTCTG
TCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGGTGTT
GTCTTTGTTTCTGTCGGTTGCACGACTTCTGTCTGGGTCACTGGTGGCTG
AACAACTTCAGTTGTAGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGTT
GCACGACCTCTGTCTGGGTCACTGGTGGCTGAACAACTTTGGTTGTAGCG
ACTATCGGTGTTGTCTTTGTTTCTGTCGCTTGTACGACTTCTGTCTGGCT
AACTGAAGGTTGCACGACCTCTGTCTGGGTCACTGGTGGCTGAACAACTT
CAGTTGTAGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACA
TCTGTCTGGGTCACTGGTGGCTGAACAACTTTGGTTGTAGCAACTATTGG
TGTTGTCTTTGTTTCTGTCGGTTGCACGACTTCTGTCTGGGTCACTGGTG
GCTGAACAACTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGTTTCTGTC
GGTTGCACGACCTCTGTCTGGGTCACTGGTGGCTGAACAACTTTGGTTGT
AGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCT
GGGTCACTGGTGGCTGAACAACTTTGGTTGTAGCAACTATCGGTGTTGTC
TTTGTTTCTGTCGGTTGCACGACTTCTGTCTGTGTCACTGGTGGCTGAAC
AACTTCAGTTGTAGCAACTATTGGTGTTGTCCTTGTTTCTGTCGGTTGCA
CGACTTCAGTCTGTGTCACTGGTGGTTGGACAAGTTCGGTTGTAGCAACT
ATCGGTGTTGTCTTTGCTTCTGTCGGTTGCACGACTTCAGTCTGTGTCAC
TGGTGGCTGAATAACTTCAGTTGTAGCAACTATCGGTGTTGTCTTTGTCT
CTGAAGGTTGCACGACTTCTGTCTGACTGACTGAAGGTTGTACGACTACA
GTTCCGGTTGCTGGTGGCTGAACAACTTCGGTTGTAGCAACTATCGGTGT
TGTCTTTGTCTCTGAAGGTTGCACGACTTCTGTCTGACTGACTGAAGGTT
GTACGACTACAGTTCCGGTTGCTGGTGGCTGAACAACTTCGGTTGTAGCA
ACTATCGGTGTCGTCTTTGTTTCTGTTAGTTGCACGACAGTTGTTTGGGG
GCCAGGCTGCTCAACAAAACTGGTCGTAGGAGTGGCTAATTGACTGATCA
CTGAAGTGCTTGGCAATATCATTGACGAGGAGACAACAATCTTTTTACAA
GTTGTTTTATTACCAGGAATAACTTCATATCCGTCTCTACAAACACATTG
GAAATGTGACCCTTGTCCTGGTGTTGGTCGACACACAGTTGATTGAAGGT
TGCAGTTGTGATCACCAGATGCACAGAAATCTAAACATTTGTTGATTGAG
TTTCCTTCTTTCAAATACCCCGGCTTGCAAGTACAATTGTGGTAAGGATT
TGTAAGAGTGTTGTTACAAGATGATGTTGTCTTGTTGCAAGTATCGTCTC
CCGTGTCACAAGGTCTTGGAATCGGTGTACAACTGTCCGTGTCATTTCCT
AATCTTTCAAAACCATCTTTGCAAGGACATTCGTAATGTCGCCCTTTGCC
AGGAGTAGACAAGCATGTTGTAGATACATCGTTGCAAGTATCAGCCTCAA
TGCGACAATACTCATGACATTGATCCAAGGAGTTGTTAAACTTCAAATAA
CCATCTTCACAGGTACAATTGTAGTAGAAAGGAGCTTCGAAGGTGTTTGT
ACAGTTGGATGAAGTTTTATTACAAGTATCTTTCCCTGTGTCACAAGGTC
TTGGCATCGGCGTACATTTGTCCATGTTGTTGTCGAGTCTCTCAAAGCCA
TGTTTACATGGACATTCGTAGTGTCGTCCTTTGCCAGGAGTAGACATACA
AGTTGTAGAGGTTGTATTGCAGGTATCAGCCTCAATACGACAATACTCAT
GACATTGATCCAAGGAGCTGTTAAACTTCAAATAACCAGCTTCACAGGTA
CAATTGTAGTAGAAAGGAGCTTCGAAGCTGTTTGTACAGTTGGATGAAGT
TTTATTGCAAGTATCTTTCCCTGTGTCGCAAGGTCTTGGCATTGGTGTGC
AACTGTCTGTGTTGTTATCTAATCTCTCGAAACCAAATTTACATGGACAT
TCATAATGTCGTCCTTTACCAGGAGTTGCCTCACACATCGTTGAAGTTTT
GTTGCAGGAATCAGCTTCAATATGACAGTAGTCTTGACAATCATCAACGG
AGTTGTTGAATTTGAGATAACCATCACCACACGAGCAGTTGAAGTAAACC
GGAGCTGTCAAAGTGTTTGTGCAATTGGATCTTGTCTTGTTACAAGTATC
TTTCCCTGTGTCACAAGGTCTTGGCATCGGCGTACATTTGTCCATGTTGT
TATCGAGTCTCTCAAAGCCAAGTTTACATGGGCATTCGTAGTGTCGTCCT
TTGCCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTGCAAGTATCAGC
CTCAATACGACAATACTCATGACATTGATCCAAGGAGTTGTTAAACTTCA
AATAACCATCTTCACAGGTACAATTGTAGTAGAAAGGAGCTTCGAAGCTG
TTTGTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTCCCTGTGTCGCA
AGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTTATCTAATCTCTCGA
AACCAAATTTACATGGACATTCATAATGTCGTCCTTTGCCAGGAGTTGCC
TCACACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCAATATGACAGTA
GTCTTGACAATCATCAACTGAGTTGTTGAATTTGAGATAACCATCACCAC
ACGAGCAGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTGTGCAATTGGAT
CGTGTCTTGTTACAAGTATCTTTCCCTGTATCACAAGGTCTTGGCATCGG
TGTACATGAGTCCGTGTTGTTATCGAGTCTCTCAAATCCATGTTTACAAG
GACATTCGTAATGCCGCCCTTTACCAGGTGTCGCCAAACACGTCGTTGAT
GTGTCGTTACATGTGTCGGAGTTATCAACGCAAAAGTCGAAACATGTCGT
ATGATTTTGTTTGACATATCCGGCTGAACAGTTACAGTCAAAGTAGTTTG
GATGCGTGTAAGTATCGATACATGTTGATATATCTTTATCACAAGTATCA
TTTCCCCAAGCACATGGAGTATCGGCTAGTGTGC Run BLAST on NCBI transcript from alignment at sc0002895:16457..22401+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041497 ID=TCONS_00041497|Name=TCONS_00041497|organism=Clytia hemisphaerica|type=transcript|length=5945bp|location=Sequence derived from alignment at sc0002895:16457..22401+ (Clytia hemisphaerica)
NGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGGTGTTGTCT
TTGTTTCTGTCGGTTGCACGACTTCAGTCTGTGTCACTGGTGATTGGACA
ACTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGCTGCAC
GACTTCTGTCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTA
TCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGTCACT
GGTGGCTGAACAACTTTGGTTGTAGCGACTATCGGTGTTGTCTTTGTTTC
TGTCGCTTGTACGACTTCTGTCTGGCTAACTGAAGGTTGCACGACCTCTG
TCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGGTGTT
GTCTTTGTTTCTGTCGGTTGCACGACATCTGTCTGGGTCACTGGTGGCTG
AACAACTTCAGTTGTAGCGACTATCGGTGTTGTCTTTGTTTCTGTCGGTT
GCACGACTTCTGTCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCA
ACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGT
CACTGGTGGCTGAACAACTTTGGTTGTAGCGACTATCGGTGTTGTCTTTG
TTTCTGTCGCTTGTACGACTTCTGTCTGGCTAACTGAAGGTTGCACGACC
TCTGTCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGG
TGTTGTCTTTGTTTCTGTCGGTTGCACGACATCTGTCTGGGTCACTGGTG
GCTGAACAACTTTGGTTGTAGCAACTATTGGTGTTGTCTTTGTTTCTGTC
GGTTGCACGACTTCTGTCTGGGTCACTGGTGGCTGAACAACTTCGGTTGT
AGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCT
GGGTCACTGGTGGCTGAACAACTTTGGTTGTAGCAACTATCGGTGTTGTC
TTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGTCACTGGTGGCTGAAC
AACTTTGGTTGTAGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCA
CGACTTCTGTCTGTGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACT
ATTGGTGTTGTCCTTGTTTCTGTCGGTTGCACGACTTCAGTCTGTGTCAC
TGGTGGTTGGACAAGTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGCTT
CTGTCGGTTGCACGACTTCAGTCTGTGTCACTGGTGGCTGAATAACTTCA
GTTGTAGCAACTATCGGTGTTGTCTTTGTCTCTGAAGGTTGCACGACTTC
TGTCTGACTGACTGAAGGTTGTACGACTACAGTTCCGGTTGCTGGTGGCT
GAACAACTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGTCTCTGAAGGT
TGCACGACTTCTGTCTGACTGACTGAAGGTTGTACGACTACAGTTCCGGT
TGCTGGTGGCTGAACAACTTCGGTTGTAGCAACTATCGGTGTCGTCTTTG
TTTCTGTTAGTTGCACGACAGTTGTTTGGGGGCCAGGCTGCTCAACAAAA
CTGGTCGTAGGAGTGGCTAATTGACTGATCACTGAAGTGCTTGGCAATAT
CATTGACGAGGAGACAACAATCTTTTTACAAGTTGTTTTATTACCAGGAA
TAACTTCATATCCGTCTCTACAAACACATTGGAAATGTGACCCTTGTCCT
GGTGTTGGTCGACACACAGTTGATTGAAGGTTGCAGTTGTGATCACCAGA
TGCACAGAAATCTAAACATTTGTTGATTGAGTTTCCTTCTTTCAAATACC
CCGGCTTGCAAGTACAATTGTGGTAAGGATTTGTAAGAGTGTTGTTACAA
GATGATGTTGTCTTGTTGCAAGTATCGTCTCCCGTGTCACAAGGTCTTGG
AATCGGTGTACAACTGTCCGTGTCATTTCCTAATCTTTCAAAACCATCTT
TGCAAGGACATTCGTAATGTCGCCCTTTGCCAGGAGTAGACAAGCATGTT
GTAGATACATCGTTGCAAGTATCAGCCTCAATGCGACAATACTCATGACA
TTGATCCAAGGAGTTGTTAAACTTCAAATAACCATCTTCACAGGTACAAT
TGTAGTAGAAAGGAGCTTCGAAGGTGTTTGTACAGTTGGATGAAGTTTTA
TTACAAGTATCTTTCCCTGTGTCACAAGGTCTTGGCATCGGCGTACATTT
GTCCATGTTGTTGTCGAGTCTCTCAAAGCCATGTTTACATGGACATTCGT
AGTGTCGTCCTTTGCCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTG
CAGGTATCAGCCTCAATACGACAATACTCATGACATTGATCCAAGGAGCT
GTTAAACTTCAAATAACCAGCTTCACAGGTACAATTGTAGTAGAAAGGAG
CTTCGAAGCTGTTTGTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTC
CCTGTGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTTATC
TAATCTCTCGAAACCAAATTTACATGGACATTCATAATGTCGTCCTTTAC
CAGGAGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCA
ATATGACAGTAGTCTTGACAATCATCAACGGAGTTGTTGAATTTGAGATA
ACCATCACCACACGAGCAGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTG
TGCAATTGGATCTTGTCTTGTTACAAGTATCTTTCCCTGTGTCACAAGGT
CTTGGCATCGGCGTACATTTGTCCATGTTGTTGTCGAGTCTCTCAAAGCC
ATGTTTACATGGACATTCGTAGTGTCGTCCTTTGCCAGGAGTAGACATAC
AAGTTGTAGAGGTTGTATTGCAGGTATCAGCCTCAATACGACAATACTCA
TGACATTGATCCAAGGAGCTGTTAAACTTCAAATAACCAGCTTCACAGGT
ACAATTGTAGTAGAAAGGAGCTTCGAAGCTGTTTGTACAGTTGGATGAAG
TTTTATTGCAAGTATCTTTCCCTGTGTCGCAAGGTCTTGGCATTGGTGTG
CAACTGTCTGTGTTGTTATCTAATCTCTCGAAACCAAATTTACATGGACA
TTCATAATGTCGTCCTTTACCAGGAGTTGCCTCACACATCGTTGAAGTTT
TGTTGCAGGAATCAGCTTCAATATGACAGTAGTCTTGACAATCATCAACG
GAGTTGTTGAATTTGAGATAACCATCACCACACGAGCAGTTGAAGTAAAC
CGGAGCTGTCAAAGTGTTTGTGCAATTGGATCTTGTCTTGTTACAAGTAT
CTTTCCCTGTGTCACAAGGTCTTGGCATCGGCGTACATTTGTCCATGTTG
TTGTCGAGTCTCTCAAAGCCATGTTTACATGGACATTCGTAGTGTCGTCC
TTTGCCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTGCAGGTATCAG
CCTCAATACGACAATACTCATGACATTGATCCAAGGAGCTGTTAAACTTC
AAATAACCAGCTTCACAGGTACAATTGTAGTAGAAAGGAGCTTCGAAGCT
GTTTGTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTCCCTGTGTCGC
AAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTTATCTAATCTCTCG
AAACCAAATTTACATGGACATTCATAATGTCGTCCTTTACCAGGAGTTGC
CTCACACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCAATATGACAGT
AGTCTTGACAATCATCAACGGAGTTGTTGAATTTGAGATAACCATCACCA
CACGAGCAGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTGTGCAATTGGA
TCTTGTCTTGTTACAAGTATCTTTCCCTGTGTCACAAGGTCTTGGCATCG
GCGTACATTTGTCCATGTTGTTGTCGAGTCTCTCAAAGCCATGTTTACAT
GGACATTCGTAGTGTCGTCCTTTGCCAGGAGTAGACATACAAGTTGTAGA
GGTTGTATTGCAGGTATCAGCCTCAATACGACAATACTCATGACATTGAT
CCAAGGAGCTGTTAAACTTCAAATAACCAGCTTCACAGGTACAATTGTAG
TAGAAAGGAGCTTCGAAGCTGTTTGTACAGTTGGATGAAGTTTTATTGCA
AGTATCTTTCCCTGTGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTG
TGTTGTTATCTAATCTCTCGAAACCAAATTTACATGGACATTCATAATGT
CGTCCTTTACCAGGAGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGA
ATCAGCTTCAATATGACAGTAGTCTTGACAATCATCAACGGAGTTGTTGA
ATTTGAGATAACCATCACCACACGAGCAGTTGAAGTAAACCGGAGCTGTC
AAAGTGTTTGTGCAATTGGATCTTGTCTTGTTACAAGTATCTTTCCCTGT
GTCACAAGGTCTTGGCATCGGCGTACATTTGTCCATGTTGTTGTCGAGTC
TCTCAAAGCCATGTTTACATGGACATTCGTAGTGTCGTCCTTTGCCAGGA
GTAGACATACAAGTTGTAGAGGTTGTATTGCAGGTATCAGCCTCAATACG
ACAATACTCATGACATTGATCCAAGGAGCTGTTAAACTTCAAATAACCAG
CTTCACAGGTACAATTGTAGTAGAAAGGAGCTTCGAAGCTGTTTGTACAG
TTGGATGAAGTTTTATTGCAAGTATCTTTCCCTGTGTCGCAAGGTCTTGG
CATTGGTGTGCAACTGTCTGTGTTGTAATCTAATCTCTCGAAACCAAATT
TACATGGACATTCATAATGTCGTCCTTTACGAGGAGTTGCCTCACACATC
GTTGAAGTTTTGTTGCAGGAATCAGCTTCAATATGACAGTAGTCTTGACA
ATCATCAACTGAGTTGTTGAATTTGAGATAACCATCACCACACGAGCAGT
TGTAGTAAACCGGAGCTGTCAAAGTGTTTGTGCAATTGGATCTTGTCTTA
TTACAAGTATCTTTCCCTGTGTCACAAGGCCTTGGCATCGGCGTACATTT
GTCCATGTTGTTATCGAGTCTCTCAAAGCCAAGTTTACATGGGCATTCGT
AGTGTCGTCCTTTGCCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTG
CAAGTATCAGCCTCAATACGACAATACTCATGACATTGATCCAAGGAGTT
GTTAAACTTCAAATAACCATCTTCACAGGTACAATTGTAGTAGAAAGGAG
CTTCGAAGCTGTTTGTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTC
CCTGTGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTTATC
TAATCTCTCGAAACCAAATTTACATGGACATTCATAATGTCGTCCTTTGC
CAGGAGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCA
ATATGACAGTAGTCTTGACAATCATCAACTGAGTTGTTGAATTTGAGATA
ACCATCACCACACGAGCAGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTG
TGCAATTGGATCGTGTCTTGTTACAAGTATCTTTCCCTGTATCACAAGGT
CTTGGCATCGGTGTACATGAGTCCGTGTTGTTATCGAGTCTCTCAAATCC
ATGTTTACAAGGACATTCGTAATGCCGCCCTTTACCAGGTGTCGCCAAAC
ACGTCGTTGATGTGTCGTTACATGTGTCGGAGTTATCAACGCAAAAGTCG
AAACATGTCGTATGATTTTGTTTGACATATCCGGCTGAACAGTTACAGTC
AAAGTAGTTTGGATGCGTGTAAGTATCGATACATGTTGATATATCTTTAT
CACAAGTATCATTTCCCCAAGCACATGGAGTATCGGCTAGTGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041497-exon-sc0002895-1491911889:16457..16882 | TCONS_00041497-exon-sc0002895-1491911889:16457..16882 | Clytia hemisphaerica | exon |
| TCONS_00041497-exon-sc0002895-1510915933:16457..16882 | TCONS_00041497-exon-sc0002895-1510915933:16457..16882 | Clytia hemisphaerica | exon |
| TCONS_00041497-exon-sc0002895-1575043694:16457..16882 | TCONS_00041497-exon-sc0002895-1575043694:16457..16882 | Clytia hemisphaerica | exon |
| TCONS_00041497-exon-sc0002895-1491911889:16964..19272 | TCONS_00041497-exon-sc0002895-1491911889:16964..19272 | Clytia hemisphaerica | exon |
| TCONS_00041497-exon-sc0002895-1510915933:16964..19272 | TCONS_00041497-exon-sc0002895-1510915933:16964..19272 | Clytia hemisphaerica | exon |
| TCONS_00041497-exon-sc0002895-1575043694:16964..19272 | TCONS_00041497-exon-sc0002895-1575043694:16964..19272 | Clytia hemisphaerica | exon |
| TCONS_00041497-exon-sc0002895-1491911889:21553..22401 | TCONS_00041497-exon-sc0002895-1491911889:21553..22401 | Clytia hemisphaerica | exon |
| TCONS_00041497-exon-sc0002895-1510915933:21553..22401 | TCONS_00041497-exon-sc0002895-1510915933:21553..22401 | Clytia hemisphaerica | exon |
| TCONS_00041497-exon-sc0002895-1575043694:21553..22401 | TCONS_00041497-exon-sc0002895-1575043694:21553..22401 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002895 | supercontig | sc0002895:16457..22401 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000742 | EGF-like_dom |
Blast
The following BLAST results are available for this feature:
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