XLOC_024209 (gene) - C. hemisphaerica

Overview
NameXLOC_024209
Unique NameXLOC_024209
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0002260:12649..21899+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_024209 ID=XLOC_024209|Name=XLOC_024209|organism=Clytia hemisphaerica|type=gene|length=9251bp|location=Sequence derived from alignment at sc0002260:12649..21899+ (Clytia hemisphaerica)
CGAAATTTTATAAGGTTTAAGATTTTCTTATTAAAGTGAAAGTATACTAA ATGTCGTTACcgtaaaattgataaaaatctcatttgcatAATTCGCgcga aaaagaaatttacctGAGACGAGTTAAATATCCCGGAGCCGATTTGAAAT ATAAGTGGACctcaaagtaaaaaaagaaatctcgcTACCGTAATAATAGT GAAGCTTCTTCCCGCCAAACACAGCATCTCTGGTTGTAGCTGGTTGGAAC CAAATTTCAGCTGAGCGTCTTTAACTACGTCTTTAACTTCTTAACTTATA ACTTAGAGACTGTTAGACTAAAACAGAAAATGGTTAAACGAAGCTTTGAT TTCGAAGGTGAGTAGATATGATAGAAATACCCGTTTATTCTCAGCAATCT GTAGACTATTTGACtatttgacaaacttttttcaccAACCCccttttgga aatttcgaataACAAATGAAAGCGTTTCCCGTATTTTTTGTGTggagagt taggtctacactgtcaaGGCGAACTGAAATTTCCTCTAATAAGAGCATAA TCATTATTTTGAATGGTTCCTAGACAAGATTTTTTCTATCTNACCGTCGT GGCCCAGTGGTATAGACTACGTGTTTCGTAATCGGAAACATGTAGGTTCG AACCGgggtaaaatattgaaaagtttcaaaaaattttctaagtccCCGTG CTTGTCGGTGCATCATGAAGATTTAGCCATAGGTTTCCATTTGCTTGTCT GCCATCTTTGCcgcgaaagcgaaagtgaatcTTATCTTAGCTTACGGACA CGATAACTCTTTTACGGAGCCGAAATTTTATAAGGTTTAAGATTTTCTTA TTAAAGTGAAAGTATACTAAATTTCGTTACcgtaaaattgataaaaatct catttgcatAATTCGCgcgaaaaagaaatttacctGAGACGAGTTAAATA TCCCGGAGCCGATTTGAAATATAAGTGGACctcaaagtaaaaaaagaaat ctcgcTACCGTAATAATAGTGAAGCTTCTTCCCGCCAAACACAGCATCTC TGGTTGTAGCTGGTTGGAACCAAATTTCAGCTGAGCGTCTTTAACTACGT CTTTAACTTCTTAACTTATAACTTAGAGACTGTTAGACTAAAACAGAAAA TGGTTAAACGAAGCTTTGATTTCGAAGGTGAGTAGATATGATAGAAATAC CCGTTTATTCTCAGCAATCTGTAGACTATTTGACtatttgacaaactttt ttcaccAACCCccttttggaaatttcgaataacaaatgaaagtaaaattt tgaaaaagacgGGCTGCGAAGAAACTATTGATGCTAGTTTTTGAAGAGAG AGCACATTGATCCTGGGTTTGTAAACCTTCAAATACGACTCCCTGCCCCG ATTCCCCAGACTCCAGAGATTTTCTTGTTTTGTGCCCGGGGATtttaaca taactttttgatACTTAAGCCGGACTGGATGCGCGATCCCTGCGACGTAC CTAAACTATCAGGTGATTGCCTAGGCGGGCTTCAATTTCACAATCTCTAT TCTGCCCGCTTTCTGCATGGTTTGTTTGTCAGGGCtataggaaatatttt tttcgttcCTCGCCCGGGACATTTGGCCCATTAGTGTTGCGAGCCTGATC CCATAAAACCATATTTTACTTGCGAACACACGTCCACTTATGCGGCCTTG CAGTTCACTTATCTCGCTGCACGGTTTGTTTGTCCGggaatagaaatttt ttttcgttcccCCGACATTTGCCCCATCACGCCCCATCTTGCCCAGTGTT GCAAGCTCAATCCCATAAAACCATATTTTAGCTATGAACGGAAATCCCcg ttagaaaaaatcaaaacatcgatAAGTGGTTAAACTTTCTAAATAACTTT GCTAAATCAAAACACGGGAAAACATCATGCGACGTATGACCACAACTCCC GCTCGCttcaatcaagaatttggtCACATGATCTGCCAGCAAAAATCGAC CAATGAAATCGTTTTTCTATATAtcttcttttgtaaaaaaacaaNTCAAG AATTTGGTCACGTGATCTGCCAGCAAAAATCGATATCTATAtatcttttt tgtaaaaaaacaagAACCTTCTCACTTCCAAATGTTATGTCcagcagtgt agacctaaagctctaaaccagcatctaataacatgaaaaccagaatatga ttcttcaatgggaatcaaaactataaagtgcacttacaaacatcaatNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctgtcaagagccttgtaaac attccaacaactttcatcgaaatgatctatcacagctcagtctaccattt ttagcgcagtccgaggattgagccgagaacgcacCGCAAACTCCTGTGCG GGTGAAAAACtacaatctgtcaatcattttctcaagcgaagagtacgcgt agcgattctagctttacgatagtgccgcgggtcatcaatggatagtatag accttttttcaaagaggccaccctgtttaataattatgtagtccagcaga aaatcaatgataaaaccatgcataattattacaatatgcatgatactaTA ATtgtgcatggctctatcattgtttttatggctggactacacaattattc aacaggacgtcctctttgaaaaaaggtctattcaattatcattatccctt tattttcattcctagaacttttgcaaaaaaaggaaaaatagataagttgt attttttactgctctattcacatactgaatttgaaagatcttctatgtgg cgtttttttgcaaacttcaaaaaactgatttttgtcctgcctttgcggga cttaGGCTCTAGTTCTacttctagttctagttctattgaattatcacata atacattacgtacattttcgtgattttaaacataaaggataaaataaacG ACGCTGGTAAAAGGaaagcttaagtgcttgagtgcagcatagggtacaaa gtccagacacgcgtttcccgtaatttttgtgtggagagttaggtctacac tgtccaGGCGAACTGAAATTTCCTCTAATAAGAGCATAATCATTATTTTG AATGGTTCCTAGACAAGATTTTTTCTATCTTCCAGAGACTGGCGTCACAG TGGAATTAAAGTACCAAGACGGGATTGTTTCCAAAGGAGAGGCTGCCACC TATGTAATTCGCCGTATTGTTGGTAGCTTAACTGATTACCCATCAGATGA GTTTAACCATACCACAGGACAATTggtaagttttgaaaaaaatcaaaaat ttcaattttggctattatgttttttataagttttgcaataatattttatg ttaatatcgtcaacggctctaacttgggacgagtggtcATATTATGGGAT GGTTgactttctggtctgtattttcacttactgttaaatctctcttgaca acaagtttgttttcaaTGAGATTTGCAACTATGTTAATTAagtgactttg gaggttcagtaAAATGATGGCCGAATTGCTATCCCATATTTTATCagact gtcccaagttagaactctttgaaaaaaagcaaatttttgaattttggcaa ttttttattttttgatgaccatcattgttttatgaaaattttttattaat aTCCAAAGTTTATTCCCCACAGAGTTTATCACTATGAGAGGTAAAGTTCC ACTAAGAATTCAAGGTTCAATCTGCTATATCTTGAGAACCACTTGAGATA TGAAGCTGAATCTTGTTACATCATCTtactgaaattcaaaatttcagcaa aatctgaGACATCAAGTTCACACATtgaaatttcttagaaaaaatggctc ttaaattAACACTGATTTCTAAATATGTtccacattttcaaattttagca tcTCGACACTCCCTTGATTGATGCGAGCGATTTAGAAAAAGATCAGATGG TCTTTGCACTATACAAACTAGAGGATCCCATGAGATATTATCCAGCCATG GTAACATCTGTCAAATCAAACAAGAGTAAGTATAATATTAACCTGCTTTA CTGTGAAAAAAGTACAAACCTGCAAAAAAAGCTCCTCTTCTTTGCCCAAA ATTTTCTCTATCAGCCTTCTTTTCAAAACCTTTCCACTCAAGACATTGTT CATTTTGTTCCATACACCCCCTTATCCCCAGACCCCCTACCTGTTTATTA GATTCCCAAGAGTAAAAACGATGAATGTAAGCCATTTTCAGTTTCCATTG ATGTTTATGATATATCAAAATCTTtgccaaaaataaattttattcagAAA AGAAGGAAGAAAAGAAACAGAAAGCACAAACGAGAAAGAAAACAGAATCC CCAAAAGAGAAAAaacagaagaagaaaatgacacCAAAAGATAAAAGTAC ACTTCCTCATAATCTTTGTACTTTCTACATAAGACGTATCAAATACATAG TAGACAAGAATAACGTTCTTTCTAAAAATTGGTTGCAATTTTGTTCTGTC ATCATCTAGACCAGATAGTCTCATTTCTACTTctctgataatttttgatg acattggaaaatcaaggctcagaccCCATAAAATGTGGCCTAGCTTGGTG TGTAAAACCCCATTTCTGTTTGACATGAGAATGTCTACTTTGACCACTGA ATCATGGTGTCCAGAGCTGCCAACCCTTCTCCTGTAGGGAGCTCTAACTT TGTCAACATTTTCAACACAAAAAAACTTGGATTTTTAGGACAGAACTAAA TGCTAAAACCAATATTAATTAACTTAAAATGTGTTCTTAGATGTAATTGT ACAGAATGACGAAGCAGCAACCATTAGCCTAAACAGCACAGATGAGGATG CTTGTTTGGCAGCCCAAGTCGCTGctaaattaaaacaaattagaaaattC AAAGGTACAGTTTAAATCTAAATTAAGTTGTTATAACCAAACAAGCATCA TGTATGGCCGGTATGACATGTTTAATAATAATGGGGAAATTCAGCTTGAG GAGTTCCCTTGATAATGTGGGGGGGTAGCGATGTTCAAATAATCTCCTTA AACCAAATAGAATTGATGATCCAACAAGTGCTACACCAAATTATTTGTAT TCTATTTAATCGAATGATGGGGGAGGAGGGATGAGGGTGAGGTTCATCTT GAAAGGGGGGTTAAcacattagcaaagttctttgaaGTTCAGTGCAACAT GCCTcaacaacacaagaaaaaagtacaTGTTTCATGGTTTCTTGTTTGTT GCATGAGGCAGGGGGTCTAGCATTTAGTACAATGCATTATGCCTACTTGA CtgctttttggcaaaaaagttAGTAACACCGCCACCCTTTTACACTTTGT ACAGTTAGAACTAACATACTTTGGGGTCAAATTTACATACATCACccttg aaaataactttttgaccatattacaaaaacaataaaatactaACTGCTAC TGCTGCTACTACTGCTACTTCTGCTACTTCTGCTACTTCTACTAAAATAT TATAGTTTCTCTCATTTCTCCATCTTCTAGAACAAGCTGCCCTAGCAAGA CNACTAAAATATTATAGTGTCTCTCATTTCTCCATCTTCTAGAACAAGCT GCCCTAGCAAGACAGCCAATGCCAGGTAATTATCTGCTATTAGTATTCAG ATTTTTCCCATTGTAAATGGGACAATACTATTTGTTGCCAGGAAATTGGc catttgtttttttattatccaATTCTTGCTGTCTTTATCTAAAATTTAGT TGTTCACATCTGCTGCAACTTTAGTTAAAAGAAAACTCTGGCCACATAAG GACACAGTTTGCAGTTCACAGGTTGCAGGTCACAGATTACAGGTTATCAA AATACAGActataaaaatattataaaattgttattttataTGAATACATA ACATCATAACAACACATAACATGTTTCTACAAACATGATCGTATGATCAT ATTATGCAGATATattatgcaaaatgacaatCCAAAAAATGCGTTCAAAA TGATATTGTtggtaatattttattttttgtaaaaattttcctTCTAAATG GCATAGATTGCAATTGACCTATCATCGTTGACCTGGGACCTGTGTCCTGT GACTTGCATTTCGAACCAACTGTAAAGTCCAGCTTATATTATGTTCTTAg gtgtttttttgcaaaatgatcaaCAAACAAGCAATACATCAAGTATAGAT GATCAACCAGCAAGCGTTTCACCAAATAGAATTGATTATCCAAAAGGTGC TACACCAAACAGAATTAATCAACCAAAAGGTTCTACACCAAATAGAATCG ATCATCCAACAAGCGCTACACCAAATAGAGATGATCAACCAACAAGTGCT ACACCAAATATAGATGATCAACCAGCAAGTGCTACACCAAATATAGATGA TCAACCAGCAAGGGTTTCACCAAATAGAATTGATTATCCAAAAGGTGCTA CACCAAATAGAATTGATTATCCAAAAGGTGCTACACCAAACAGAATTGAT CAACCAAAAAGTTCTACACCAAACAGAATTGATCAACCAACAACCGCTAC ACCAACTAGAATTGATCAACCAACAAGCGCTACTCCAACTAGAATTGATC AACCAACAAGCGCTACTCCAACTAGAATTGATCAACAAAGAAGTCCTACA TCAAATAGAATTGATCATCCAACAAATGCCACACCAAATAGAATTGATCA ACCAACAAGTGCTGATTCGCCAGGTAAATTGTTTTANTGCTACTCCAACT AGAATTGATCATCCAAGAAGTCCTACATCAAATAGAATTGATCATCCAAC AAATGCCACACCAAATAGAATTGATCAAGCAACAAGTGCTGATTCGCCAG GtaaattgttttaaataatCTCAGTTTTAGTTTTCTGCCAGTTTCACTAA ACTATAActtgtgaaaaagtgaaatattgccGACAAAATTAAGAGGATAA AACCGTCAAAacctttatttttataaaatttttacaaaagatTCTTTGTT CCATAGATAAAATATCACAATATTTCATTACTTAGAGTACCCATTTCCAG CAAGAAAACCACAAGACAATCAAGTTGACTTCACCAAAATTCAACAAGCT GGTAAGACAACTTATAGCAGTGTATTTTGTTCGGAAGAGCTATTATTATT TTGCAGCATCAGTTTGGAGAActcagatacacgttttttatataagcata tCCAGGCTTAAATCTTGCAAAAACTTAGGCATGGCCTAAGCATATGCCCC CTGTAGGAAATTGTATGTGTTTCTTTTTCCCTCTTCAGAAGAAATAATTa ttaaacaaaaagagaaagaCAATCTAAAAACTGCACAGGCTGCATAATCC AAACTGAAAACCTATNAAAAGATTCTTTGTTCCATAGATAAAATATCACA ATATTTCATTACTTAGAGTACCCATTTCCAGCAAGAAAACCACAAGACAA TCAAGTTGACTTCACCAAAATTCAACAAGCTGGTAAGACAACTTATAGCA GTGTATTTTGTTCGGAAGAGCTATTATTATTTTGCAGCATCAGTTTGGAG AActcagatacacgttttttatataagcatatCCAGGCTTAAATCTTGCA AAAACTTAGGCATGGCCTAATCATATGCCCCCTGTAGGAAATTGTATGTG TTTCTTTTTCCCTCttcagaagaaaaaattatcaaacaaAGAGAGAAAGA CAATCTAAAAACTGCACAGGCTGCACAATCCAAACTGAAAACCTATGAAC TCAATAGGTAATTTTCTgcttgatattttgaaatattttttcatgttaGT TCCCTTATATAATTAAGCTGCTTCAGAAAAGTTATTTGGtagatttggca aaattttgagaatatTACTTTCcgtcaaaaattttgttgacatctaacaa tttcaattttaagTTAAATTTTCCAGCCAATTGCTAAAATTGTTTTTCCt ctgggaaaattttttaagtCATCCAATCCAGGTTATATTTCAACCAAAAT TCTGTCATCCTTTTTATGGTTATAGAACAgttatggagaaaatttttcaa gatCAAGTCACAAACAGGTGAATGAATAAGTTAAATATTAAACTTTTAAG GCTCTATACAATCTTGTTTTGTTGTGATGCTGTCTAATGCACAAAAACAC TTTGTTCTAATTTGTGTTCTAATCTTGTCATTGCAATATCGGTGATTCTA ATATACAGCCATTGCTTTTTTAGTTTGTTAAAATTACAACTCTCCGTAAC GTACACCCTGTTTATTAGATAATTGATACATTTTTAGTTATCAACAAGAT CCTCATCATAGCAGTGTCCCTGGTGGTGTCACAACAAAACCATGCTCATC AAGAAACCCGTATCTTGACTTGTTGAAGTAAGTGAAAGGTTACCCAAATT GTACAAAGGTTACCTGGATTTGGGTCACATTTCGCTATTCTCTGATGGAT TTGTCCAATGATATTAGGTTGTTCACTCTGTGTAATTTAATGGGATAATT TTATAAGGAATGATCATCCTCATCCtctaaattttgagattttctggGGA CTtaaaatttcacaaatttttaaaacagttttaaaaaatttctaaggACA CCCTCCGGCTGTAATACTGACATTCTGACTTTGGAATATTTTCATTATCA TGCTGCCTCTACAATGTAATGTGAATTTAGCTGTTTGACTTCTTTTTAGA AATCCATGTTCAGAGTGCTGGAAAAAAGAATCTGATCTCTTTCATCTGAG ACAGCAGCTAGAAGAAAGTGAgttctttgcttttttcaacTCAACagaaa gtgcattttttgggtcaccgataaaccagttatcagacgcAAGCTCTACA ATacagaaatattttactcgttctcgatattttcgcatattttccttgtc taaaggctcggaaaatatgatgcaaaaaaaattggaactcGTAGAATATT TCTTGTATTGTACTCACAACTTtctgataactattacatattttttactt ttttaaaacgTACAACTTTGTGCTGAACCTTTTTACCTCCTTTGTCATAT TATGCACAGTAAGTTGGTGcgctcataaaaaaaattaaatggaaaatgga a
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00039972TCONS_00039972Clytia hemisphaericatranscript
TCONS_00039973TCONS_00039973Clytia hemisphaericatranscript
TCONS_00039974TCONS_00039974Clytia hemisphaericatranscript
TCONS_00039976TCONS_00039976Clytia hemisphaericatranscript
TCONS_00039977TCONS_00039977Clytia hemisphaericatranscript
TCONS_00039978TCONS_00039978Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00039973-proteinTCONS_00039973-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002260supercontigsc0002260:12649..21899 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.7 1.54 1.3 1.08 2.94 2.42 1.88 1.77 0.95 2.33 2.4 0.89 1 1.18 1.22 1.71 1.63 2.02 0.68 0.74 0.36 0.71 0.75 0.88 2.28 3.11 0.6 0.7 0.64 0.78