TCONS_00039978 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039978
Unique NameTCONS_00039978
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length798

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039978 ID=TCONS_00039978|Name=TCONS_00039978|organism=Clytia hemisphaerica|type=transcript|length=798bp
TACTCCAACTAGAATTGATCATCCAAGAAGTCCTACATCAAATAGAATTG
ATCATCCAACAAATGCCACACCAAATAGAATTGATCAAGCAACAAGTGCT
GATTCGCCAGAGTACCCATTTCCAGCAAGAAAACCACAAGACAATCAAGT
TGACTTCACCAAAATTCAACAAGCTGaagaaaaaattatcaaacaaAGAG
AGAAAGACAATCTAAAAACTGCACAGGCTGCACAATCCAAACTGAAAACC
TATGAACTCAATAGAACAgttatggagaaaatttttcaagatCAAGTCAC
AAACAGTTATCAACAAGATCCTCATCATAGCAGTGTCCCTGGTGGTGTCA
CAACAAAACCATGCTCATCAAGAAACCCGTATCTTGACTTGTTGAAAAAT
CCATGTTCAGAGTGCTGGAAAAAAGAATCTGATCTCTTTCATCTGAGACA
GCAGCTAGAAGAAAGTGAgttctttgcttttttcaacTCAACagaaagtg
cattttttgggtcaccgataaaccagttatcagacgcAAGCTCTACAATa
cagaaatattttactcgttctcgatattttcgcatattttccttgtctaa
aggctcggaaaatatgatgcaaaaaaaattggaactcGTAGAATATTTCT
TGTATTGTACTCACAACTTtctgataactattacatattttttacttttt
taaaacgTACAACTTTGTGCTGAACCTTTTTACCTCCTTTGTCATATTAT
GCACAGTAAGTTGGTGcgctcataaaaaaaattaaatggaaaatggaa
Run BLAST on NCBI

transcript from alignment at sc0002260:19539..21899+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039978 ID=TCONS_00039978|Name=TCONS_00039978|organism=Clytia hemisphaerica|type=transcript|length=2361bp|location=Sequence derived from alignment at sc0002260:19539..21899+ (Clytia hemisphaerica)
TACTCCAACTAGAATTGATCATCCAAGAAGTCCTACATCAAATAGAATTG
ATCATCCAACAAATGCCACACCAAATAGAATTGATCAAGCAACAAGTGCT
GATTCGCCAGGtaaattgttttaaataatCTCAGTTTTAGTTTTCTGCCA
GTTTCACTAAACTATAActtgtgaaaaagtgaaatattgccGACAAAATT
AAGAGGATAAAACCGTCAAAacctttatttttataaaatttttacaaaag
atTCTTTGTTCCATAGATAAAATATCACAATATTTCATTACTTAGAGTAC
CCATTTCCAGCAAGAAAACCACAAGACAATCAAGTTGACTTCACCAAAAT
TCAACAAGCTGGTAAGACAACTTATAGCAGTGTATTTTGTTCGGAAGAGC
TATTATTATTTTGCAGCATCAGTTTGGAGAActcagatacacgtttttta
tataagcatatCCAGGCTTAAATCTTGCAAAAACTTAGGCATGGCCTAAG
CATATGCCCCCTGTAGGAAATTGTATGTGTTTCTTTTTCCCTCTTCAGAA
GAAATAATTattaaacaaaaagagaaagaCAATCTAAAAACTGCACAGGC
TGCATAATCCAAACTGAAAACCTATNAAAAGATTCTTTGTTCCATAGATA
AAATATCACAATATTTCATTACTTAGAGTACCCATTTCCAGCAAGAAAAC
CACAAGACAATCAAGTTGACTTCACCAAAATTCAACAAGCTGGTAAGACA
ACTTATAGCAGTGTATTTTGTTCGGAAGAGCTATTATTATTTTGCAGCAT
CAGTTTGGAGAActcagatacacgttttttatataagcatatCCAGGCTT
AAATCTTGCAAAAACTTAGGCATGGCCTAATCATATGCCCCCTGTAGGAA
ATTGTATGTGTTTCTTTTTCCCTCttcagaagaaaaaattatcaaacaaA
GAGAGAAAGACAATCTAAAAACTGCACAGGCTGCACAATCCAAACTGAAA
ACCTATGAACTCAATAGGTAATTTTCTgcttgatattttgaaatattttt
tcatgttaGTTCCCTTATATAATTAAGCTGCTTCAGAAAAGTTATTTGGt
agatttggcaaaattttgagaatatTACTTTCcgtcaaaaattttgttga
catctaacaatttcaattttaagTTAAATTTTCCAGCCAATTGCTAAAAT
TGTTTTTCCtctgggaaaattttttaagtCATCCAATCCAGGTTATATTT
CAACCAAAATTCTGTCATCCTTTTTATGGTTATAGAACAgttatggagaa
aatttttcaagatCAAGTCACAAACAGGTGAATGAATAAGTTAAATATTA
AACTTTTAAGGCTCTATACAATCTTGTTTTGTTGTGATGCTGTCTAATGC
ACAAAAACACTTTGTTCTAATTTGTGTTCTAATCTTGTCATTGCAATATC
GGTGATTCTAATATACAGCCATTGCTTTTTTAGTTTGTTAAAATTACAAC
TCTCCGTAACGTACACCCTGTTTATTAGATAATTGATACATTTTTAGTTA
TCAACAAGATCCTCATCATAGCAGTGTCCCTGGTGGTGTCACAACAAAAC
CATGCTCATCAAGAAACCCGTATCTTGACTTGTTGAAGTAAGTGAAAGGT
TACCCAAATTGTACAAAGGTTACCTGGATTTGGGTCACATTTCGCTATTC
TCTGATGGATTTGTCCAATGATATTAGGTTGTTCACTCTGTGTAATTTAA
TGGGATAATTTTATAAGGAATGATCATCCTCATCCtctaaattttgagat
tttctggGGACTtaaaatttcacaaatttttaaaacagttttaaaaaatt
tctaaggACACCCTCCGGCTGTAATACTGACATTCTGACTTTGGAATATT
TTCATTATCATGCTGCCTCTACAATGTAATGTGAATTTAGCTGTTTGACT
TCTTTTTAGAAATCCATGTTCAGAGTGCTGGAAAAAAGAATCTGATCTCT
TTCATCTGAGACAGCAGCTAGAAGAAAGTGAgttctttgcttttttcaac
TCAACagaaagtgcattttttgggtcaccgataaaccagttatcagacgc
AAGCTCTACAATacagaaatattttactcgttctcgatattttcgcatat
tttccttgtctaaaggctcggaaaatatgatgcaaaaaaaattggaactc
GTAGAATATTTCTTGTATTGTACTCACAACTTtctgataactattacata
ttttttacttttttaaaacgTACAACTTTGTGCTGAACCTTTTTACCTCC
TTTGTCATATTATGCACAGTAAGTTGGTGcgctcataaaaaaaattaaat
ggaaaatggaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024209XLOC_024209Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039978-exon-sc0002260-1491911889:19539..19648TCONS_00039978-exon-sc0002260-1491911889:19539..19648Clytia hemisphaericaexon
TCONS_00039978-exon-sc0002260-1510915933:19539..19648TCONS_00039978-exon-sc0002260-1510915933:19539..19648Clytia hemisphaericaexon
TCONS_00039978-exon-sc0002260-1575043694:19539..19648TCONS_00039978-exon-sc0002260-1575043694:19539..19648Clytia hemisphaericaexon
TCONS_00039978-exon-sc0002260-1491911889:20215..20280TCONS_00039978-exon-sc0002260-1491911889:20215..20280Clytia hemisphaericaexon
TCONS_00039978-exon-sc0002260-1510915933:20215..20280TCONS_00039978-exon-sc0002260-1510915933:20215..20280Clytia hemisphaericaexon
TCONS_00039978-exon-sc0002260-1575043694:20215..20280TCONS_00039978-exon-sc0002260-1575043694:20215..20280Clytia hemisphaericaexon
TCONS_00039978-exon-sc0002260-1491911889:20468..20555TCONS_00039978-exon-sc0002260-1491911889:20468..20555Clytia hemisphaericaexon
TCONS_00039978-exon-sc0002260-1510915933:20468..20555TCONS_00039978-exon-sc0002260-1510915933:20468..20555Clytia hemisphaericaexon
TCONS_00039978-exon-sc0002260-1575043694:20468..20555TCONS_00039978-exon-sc0002260-1575043694:20468..20555Clytia hemisphaericaexon
TCONS_00039978-exon-sc0002260-1491911889:20824..20865TCONS_00039978-exon-sc0002260-1491911889:20824..20865Clytia hemisphaericaexon
TCONS_00039978-exon-sc0002260-1510915933:20824..20865TCONS_00039978-exon-sc0002260-1510915933:20824..20865Clytia hemisphaericaexon
TCONS_00039978-exon-sc0002260-1575043694:20824..20865TCONS_00039978-exon-sc0002260-1575043694:20824..20865Clytia hemisphaericaexon
TCONS_00039978-exon-sc0002260-1491911889:21086..21175TCONS_00039978-exon-sc0002260-1491911889:21086..21175Clytia hemisphaericaexon
TCONS_00039978-exon-sc0002260-1510915933:21086..21175TCONS_00039978-exon-sc0002260-1510915933:21086..21175Clytia hemisphaericaexon
TCONS_00039978-exon-sc0002260-1575043694:21086..21175TCONS_00039978-exon-sc0002260-1575043694:21086..21175Clytia hemisphaericaexon
TCONS_00039978-exon-sc0002260-1491911889:21498..21899TCONS_00039978-exon-sc0002260-1491911889:21498..21899Clytia hemisphaericaexon
TCONS_00039978-exon-sc0002260-1510915933:21498..21899TCONS_00039978-exon-sc0002260-1510915933:21498..21899Clytia hemisphaericaexon
TCONS_00039978-exon-sc0002260-1575043694:21498..21899TCONS_00039978-exon-sc0002260-1575043694:21498..21899Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002260supercontigsc0002260:19539..21899 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.31167	0.334031	0.492454	0.434323	0.0163728	0	0.291395	0	0.0763809	0.137206	0.14428	0.0708607	0.0737626	0.136191	0.0952745	0.0950176	0.239629	0.410828	0.262617	0.157208	0.105861	0.210104	0.0823988	0.183557	0	0	0.0703108	0.216775	0.243439	0.280861
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039978 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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