TCONS_00039976 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039976
Unique NameTCONS_00039976
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039976 ID=TCONS_00039976|Name=TCONS_00039976|organism=Clytia hemisphaerica|type=transcript|length=1539bp
CAAAATCTTtgccaaaaataaattttattcagAAAAGAAGGAAGAAAAGA
AACAGAAAGCACAAACGAGAAAGAAAACAGAATCCCCAAAAGAGAAAAaa
cagaagaagaaaatgacacCAAAAGATAAAAATGTAATTGTACAGAATGA
CGAAGCAGCAACCATTAGCCTAAACAGCACAGATGAGGATGCTTGTTTGG
CAGCCCAAGTCGCTGctaaattaaaacaaattagaaaattCAAAGAACAA
GCTGCCCTAGCAAGACAGCCAATGCCAGgtgtttttttgcaaaatgatca
aCAAACAAGCAATACATCAAGTATAGATGATCAACCAGCAAGCGTTTCAC
CAAATAGAATTGATTATCCAAAAGGTGCTACACCAAACAGAATTAATCAA
CCAAAAGGTTCTACACCAAATAGAATCGATCATCCAACAAGCGCTACACC
AAATAGAGATGATCAACCAACAAGTGCTACACCAAATATAGATGATCAAC
CAGCAAGTGCTACACCAAATATAGATGATCAACCAGCAAGGGTTTCACCA
AATAGAATTGATTATCCAAAAGGTGCTACACCAAATAGAATTGATTATCC
AAAAGGTGCTACACCAAACAGAATTGATCAACCAAAAAGTTCTACACCAA
ACAGAATTGATCAACCAACAACCGCTACACCAACTAGAATTGATCAACCA
ACAAGCGCTACTCCAACTAGAATTGATCAACCAACAAGCGCTACTCCAAC
TAGAATTGATCAACAAAGAAGTCCTACATCAAATAGAATTGATCATCCAA
CAAATGCCACACCAAATAGAATTGATCAACCAACAAGTGCTGATTCGCCA
GAGTACCCATTTCCAGCAAGAAAACCACAAGACAATCAAGTTGACTTCAC
CAAAATTCAACAAGCTGaagaaaaaattatcaaacaaAGAGAGAAAGACA
ATCTAAAAACTGCACAGGCTGCACAATCCAAACTGAAAACCTATGAACTC
AATAGAACAgttatggagaaaatttttcaagatCAAGTCACAAACAGTTA
TCAACAAGATCCTCATCATAGCAGTGTCCCTGGTGGTGTCACAACAAAAC
CATGCTCATCAAGAAACCCGTATCTTGACTTGTTGAAAAATCCATGTTCA
GAGTGCTGGAAAAAAGAATCTGATCTCTTTCATCTGAGACAGCAGCTAGA
AGAAAGTGAgttctttgcttttttcaacTCAACagaaagtgcattttttg
ggtcaccgataaaccagttatcagacgcAAGCTCTACAATacagaaatat
tttactcgttctcgatattttcgcatattttccttgtctaaaggctcgga
aaatatgatgcaaaaaaaattggaactcGTAGAATATTTCTTGTATTGTA
CTCACAACTTtctgataactattacatattttttacttttttaaaacgTA
CAACTTTGTGCTGAACCTTTTTACCTCCTTTGTCATATTATGCACAGTAA
GTTGGTGcgctcataaaaaaaattaaatggaaaatggaa
Run BLAST on NCBI

transcript from alignment at sc0002260:17064..21899+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039976 ID=TCONS_00039976|Name=TCONS_00039976|organism=Clytia hemisphaerica|type=transcript|length=4836bp|location=Sequence derived from alignment at sc0002260:17064..21899+ (Clytia hemisphaerica)
CAAAATCTTtgccaaaaataaattttattcagAAAAGAAGGAAGAAAAGA
AACAGAAAGCACAAACGAGAAAGAAAACAGAATCCCCAAAAGAGAAAAaa
cagaagaagaaaatgacacCAAAAGATAAAAGTACACTTCCTCATAATCT
TTGTACTTTCTACATAAGACGTATCAAATACATAGTAGACAAGAATAACG
TTCTTTCTAAAAATTGGTTGCAATTTTGTTCTGTCATCATCTAGACCAGA
TAGTCTCATTTCTACTTctctgataatttttgatgacattggaaaatcaa
ggctcagaccCCATAAAATGTGGCCTAGCTTGGTGTGTAAAACCCCATTT
CTGTTTGACATGAGAATGTCTACTTTGACCACTGAATCATGGTGTCCAGA
GCTGCCAACCCTTCTCCTGTAGGGAGCTCTAACTTTGTCAACATTTTCAA
CACAAAAAAACTTGGATTTTTAGGACAGAACTAAATGCTAAAACCAATAT
TAATTAACTTAAAATGTGTTCTTAGATGTAATTGTACAGAATGACGAAGC
AGCAACCATTAGCCTAAACAGCACAGATGAGGATGCTTGTTTGGCAGCCC
AAGTCGCTGctaaattaaaacaaattagaaaattCAAAGGTACAGTTTAA
ATCTAAATTAAGTTGTTATAACCAAACAAGCATCATGTATGGCCGGTATG
ACATGTTTAATAATAATGGGGAAATTCAGCTTGAGGAGTTCCCTTGATAA
TGTGGGGGGGTAGCGATGTTCAAATAATCTCCTTAAACCAAATAGAATTG
ATGATCCAACAAGTGCTACACCAAATTATTTGTATTCTATTTAATCGAAT
GATGGGGGAGGAGGGATGAGGGTGAGGTTCATCTTGAAAGGGGGGTTAAc
acattagcaaagttctttgaaGTTCAGTGCAACATGCCTcaacaacacaa
gaaaaaagtacaTGTTTCATGGTTTCTTGTTTGTTGCATGAGGCAGGGGG
TCTAGCATTTAGTACAATGCATTATGCCTACTTGACtgctttttggcaaa
aaagttAGTAACACCGCCACCCTTTTACACTTTGTACAGTTAGAACTAAC
ATACTTTGGGGTCAAATTTACATACATCACccttgaaaataactttttga
ccatattacaaaaacaataaaatactaACTGCTACTGCTGCTACTACTGC
TACTTCTGCTACTTCTGCTACTTCTACTAAAATATTATAGTTTCTCTCAT
TTCTCCATCTTCTAGAACAAGCTGCCCTAGCAAGACNACTAAAATATTAT
AGTGTCTCTCATTTCTCCATCTTCTAGAACAAGCTGCCCTAGCAAGACAG
CCAATGCCAGGTAATTATCTGCTATTAGTATTCAGATTTTTCCCATTGTA
AATGGGACAATACTATTTGTTGCCAGGAAATTGGccatttgtttttttat
tatccaATTCTTGCTGTCTTTATCTAAAATTTAGTTGTTCACATCTGCTG
CAACTTTAGTTAAAAGAAAACTCTGGCCACATAAGGACACAGTTTGCAGT
TCACAGGTTGCAGGTCACAGATTACAGGTTATCAAAATACAGActataaa
aatattataaaattgttattttataTGAATACATAACATCATAACAACAC
ATAACATGTTTCTACAAACATGATCGTATGATCATATTATGCAGATATat
tatgcaaaatgacaatCCAAAAAATGCGTTCAAAATGATATTGTtggtaa
tattttattttttgtaaaaattttcctTCTAAATGGCATAGATTGCAATT
GACCTATCATCGTTGACCTGGGACCTGTGTCCTGTGACTTGCATTTCGAA
CCAACTGTAAAGTCCAGCTTATATTATGTTCTTAggtgtttttttgcaaa
atgatcaaCAAACAAGCAATACATCAAGTATAGATGATCAACCAGCAAGC
GTTTCACCAAATAGAATTGATTATCCAAAAGGTGCTACACCAAACAGAAT
TAATCAACCAAAAGGTTCTACACCAAATAGAATCGATCATCCAACAAGCG
CTACACCAAATAGAGATGATCAACCAACAAGTGCTACACCAAATATAGAT
GATCAACCAGCAAGTGCTACACCAAATATAGATGATCAACCAGCAAGGGT
TTCACCAAATAGAATTGATTATCCAAAAGGTGCTACACCAAATAGAATTG
ATTATCCAAAAGGTGCTACACCAAACAGAATTGATCAACCAAAAAGTTCT
ACACCAAACAGAATTGATCAACCAACAACCGCTACACCAACTAGAATTGA
TCAACCAACAAGCGCTACTCCAACTAGAATTGATCAACCAACAAGCGCTA
CTCCAACTAGAATTGATCAACAAAGAAGTCCTACATCAAATAGAATTGAT
CATCCAACAAATGCCACACCAAATAGAATTGATCAACCAACAAGTGCTGA
TTCGCCAGGTAAATTGTTTTANTGCTACTCCAACTAGAATTGATCATCCA
AGAAGTCCTACATCAAATAGAATTGATCATCCAACAAATGCCACACCAAA
TAGAATTGATCAAGCAACAAGTGCTGATTCGCCAGGtaaattgttttaaa
taatCTCAGTTTTAGTTTTCTGCCAGTTTCACTAAACTATAActtgtgaa
aaagtgaaatattgccGACAAAATTAAGAGGATAAAACCGTCAAAacctt
tatttttataaaatttttacaaaagatTCTTTGTTCCATAGATAAAATAT
CACAATATTTCATTACTTAGAGTACCCATTTCCAGCAAGAAAACCACAAG
ACAATCAAGTTGACTTCACCAAAATTCAACAAGCTGGTAAGACAACTTAT
AGCAGTGTATTTTGTTCGGAAGAGCTATTATTATTTTGCAGCATCAGTTT
GGAGAActcagatacacgttttttatataagcatatCCAGGCTTAAATCT
TGCAAAAACTTAGGCATGGCCTAAGCATATGCCCCCTGTAGGAAATTGTA
TGTGTTTCTTTTTCCCTCTTCAGAAGAAATAATTattaaacaaaaagaga
aagaCAATCTAAAAACTGCACAGGCTGCATAATCCAAACTGAAAACCTAT
NAAAAGATTCTTTGTTCCATAGATAAAATATCACAATATTTCATTACTTA
GAGTACCCATTTCCAGCAAGAAAACCACAAGACAATCAAGTTGACTTCAC
CAAAATTCAACAAGCTGGTAAGACAACTTATAGCAGTGTATTTTGTTCGG
AAGAGCTATTATTATTTTGCAGCATCAGTTTGGAGAActcagatacacgt
tttttatataagcatatCCAGGCTTAAATCTTGCAAAAACTTAGGCATGG
CCTAATCATATGCCCCCTGTAGGAAATTGTATGTGTTTCTTTTTCCCTCt
tcagaagaaaaaattatcaaacaaAGAGAGAAAGACAATCTAAAAACTGC
ACAGGCTGCACAATCCAAACTGAAAACCTATGAACTCAATAGGTAATTTT
CTgcttgatattttgaaatattttttcatgttaGTTCCCTTATATAATTA
AGCTGCTTCAGAAAAGTTATTTGGtagatttggcaaaattttgagaatat
TACTTTCcgtcaaaaattttgttgacatctaacaatttcaattttaagTT
AAATTTTCCAGCCAATTGCTAAAATTGTTTTTCCtctgggaaaatttttt
aagtCATCCAATCCAGGTTATATTTCAACCAAAATTCTGTCATCCTTTTT
ATGGTTATAGAACAgttatggagaaaatttttcaagatCAAGTCACAAAC
AGGTGAATGAATAAGTTAAATATTAAACTTTTAAGGCTCTATACAATCTT
GTTTTGTTGTGATGCTGTCTAATGCACAAAAACACTTTGTTCTAATTTGT
GTTCTAATCTTGTCATTGCAATATCGGTGATTCTAATATACAGCCATTGC
TTTTTTAGTTTGTTAAAATTACAACTCTCCGTAACGTACACCCTGTTTAT
TAGATAATTGATACATTTTTAGTTATCAACAAGATCCTCATCATAGCAGT
GTCCCTGGTGGTGTCACAACAAAACCATGCTCATCAAGAAACCCGTATCT
TGACTTGTTGAAGTAAGTGAAAGGTTACCCAAATTGTACAAAGGTTACCT
GGATTTGGGTCACATTTCGCTATTCTCTGATGGATTTGTCCAATGATATT
AGGTTGTTCACTCTGTGTAATTTAATGGGATAATTTTATAAGGAATGATC
ATCCTCATCCtctaaattttgagattttctggGGACTtaaaatttcacaa
atttttaaaacagttttaaaaaatttctaaggACACCCTCCGGCTGTAAT
ACTGACATTCTGACTTTGGAATATTTTCATTATCATGCTGCCTCTACAAT
GTAATGTGAATTTAGCTGTTTGACTTCTTTTTAGAAATCCATGTTCAGAG
TGCTGGAAAAAAGAATCTGATCTCTTTCATCTGAGACAGCAGCTAGAAGA
AAGTGAgttctttgcttttttcaacTCAACagaaagtgcattttttgggt
caccgataaaccagttatcagacgcAAGCTCTACAATacagaaatatttt
actcgttctcgatattttcgcatattttccttgtctaaaggctcggaaaa
tatgatgcaaaaaaaattggaactcGTAGAATATTTCTTGTATTGTACTC
ACAACTTtctgataactattacatattttttacttttttaaaacgTACAA
CTTTGTGCTGAACCTTTTTACCTCCTTTGTCATATTATGCACAGTAAGTT
GGTGcgctcataaaaaaaattaaatggaaaatggaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024209XLOC_024209Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039976-exon-sc0002260-1491911889:17064..17194TCONS_00039976-exon-sc0002260-1491911889:17064..17194Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1510915933:17064..17194TCONS_00039976-exon-sc0002260-1510915933:17064..17194Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1575043694:17064..17194TCONS_00039976-exon-sc0002260-1575043694:17064..17194Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1491911889:17589..17702TCONS_00039976-exon-sc0002260-1491911889:17589..17702Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1510915933:17589..17702TCONS_00039976-exon-sc0002260-1510915933:17589..17702Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1575043694:17589..17702TCONS_00039976-exon-sc0002260-1575043694:17589..17702Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1491911889:18391..18423TCONS_00039976-exon-sc0002260-1491911889:18391..18423Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1510915933:18391..18423TCONS_00039976-exon-sc0002260-1510915933:18391..18423Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1575043694:18391..18423TCONS_00039976-exon-sc0002260-1575043694:18391..18423Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1491911889:18949..19521TCONS_00039976-exon-sc0002260-1491911889:18949..19521Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1510915933:18949..19521TCONS_00039976-exon-sc0002260-1510915933:18949..19521Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1575043694:18949..19521TCONS_00039976-exon-sc0002260-1575043694:18949..19521Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1491911889:20215..20280TCONS_00039976-exon-sc0002260-1491911889:20215..20280Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1510915933:20215..20280TCONS_00039976-exon-sc0002260-1510915933:20215..20280Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1575043694:20215..20280TCONS_00039976-exon-sc0002260-1575043694:20215..20280Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1491911889:20468..20555TCONS_00039976-exon-sc0002260-1491911889:20468..20555Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1510915933:20468..20555TCONS_00039976-exon-sc0002260-1510915933:20468..20555Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1575043694:20468..20555TCONS_00039976-exon-sc0002260-1575043694:20468..20555Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1491911889:20824..20865TCONS_00039976-exon-sc0002260-1491911889:20824..20865Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1510915933:20824..20865TCONS_00039976-exon-sc0002260-1510915933:20824..20865Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1575043694:20824..20865TCONS_00039976-exon-sc0002260-1575043694:20824..20865Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1491911889:21086..21175TCONS_00039976-exon-sc0002260-1491911889:21086..21175Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1510915933:21086..21175TCONS_00039976-exon-sc0002260-1510915933:21086..21175Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1575043694:21086..21175TCONS_00039976-exon-sc0002260-1575043694:21086..21175Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1491911889:21498..21899TCONS_00039976-exon-sc0002260-1491911889:21498..21899Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1510915933:21498..21899TCONS_00039976-exon-sc0002260-1510915933:21498..21899Clytia hemisphaericaexon
TCONS_00039976-exon-sc0002260-1575043694:21498..21899TCONS_00039976-exon-sc0002260-1575043694:21498..21899Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002260supercontigsc0002260:17064..21899 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.72664	0.145965	0	0	0.0333634	1.18977	0.513359	1.12973	0	0.791784	0.00464841	0.300944	0.0896911	0	0.428442	0.865111	0	5.43854e-06	0	0.0825067	0.151944	0.186223	0	0.387655	0	0.468233	0.0786747	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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