XLOC_023996 (gene) - C. hemisphaerica

Overview
NameXLOC_023996
Unique NameXLOC_023996
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0002167:10045..13873+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_023996 ID=XLOC_023996|Name=XLOC_023996|organism=Clytia hemisphaerica|type=gene|length=3829bp|location=Sequence derived from alignment at sc0002167:10045..13873+ (Clytia hemisphaerica)
aaattttttttcaacattgaTGGAGAGACAGAGGTGGATTTGGTAGTTGG
TAAGAAAAATCTGACTTTTAAGGAAAGCACTTTTGCCTATAGCTTGATGG
ATGCCTTTCGACTTAAGGGCTGGCTTTTAATAGACTTTTTCTCAACTTCT
TATGAGCTAGAATTTGAGGATGGGTGTGTGTGTCTGAGTTTTTTCAGTCA
AAGCTAATTTTGGCTATAAAGCTTTGGGGTAGCCCCTGGGGAGGGACTTA
GGCAAAATAAGGTGGGGAGACGTGCCGCTGTTCAGGATTCTTTTTCAGGC
CCTGAAAATCTCTGATGGGGTCACAAAATTACCATGGCTGATTCAGCCAA
TTGTGTTTGTGTTTGAGTTGCAAACTCTCGGCCGAACTTTCAGATTCTCG
GCCGAGAGTTTAAATTTCCGGCCAAGAGCTTAAAAAATCTCGGCAGACTA
TCGTTACGATCGGCCGAAAATGCATAGTCAGGGCCGAGAGGGTCCAAATT
TCGCCCAAATTTTGTCTATTAGGGTAtggattttgtcaaaaattagtATC
TGActgggtccatttttcaaactcaagCGGCACGTCCCTGTCGGTCGTCA
AGGTAAGTGCCCCCCGGGGTTAGCCTGGAGACCTCAAAAATGGTTGGTAG
CCTGGAGACCTCAAAAATGGTTggtggatttggctgaaattttccaCACT
TGGTCTCTGGGTACATACCCCCCATGTATGTATTATTGATACCAAGAAAT
TGAAGAGCCCAAATGACTGGGCAGCAGATGATAATGGATGTTGGGAGAAC
AGGGGAAATTACGGTACCATTNCCAACACCACACAAAACAGCTTATACCT
GCTTGAGAGATCTGAATGAGAGCTTCTTAACAATGCCAATTTCTTGAGTA
AATAGTATATATacggttggttcgaaacgcaggaaACAGGACACAGGAAA
CAGGacacaggacacaggacgcaggacACAGGACACCCATTACAGGCCAA
AAAGTTTCTCGAAATAGATAACAACCTAAGTTTTGAGGCAAATGGCTAGG
TTTATTTCATATTTCGTCAAAGTTTACCATCCAGAGGtaaaataaaatag
tttttaaagACCCTTCGAAAATCAACCAAATATTCACCCGAGCACGGCAA
TTTTccagactgaaaattgaaactttgcaGACCATCAAGAAAACACCCTT
TAAACTCTACTAGCCTGAATCCCGCCAATGACCAACGGAATAATTTTCCA
CGGCCTAGTATATTTCACAAGAGTGTGCAGATGTAAAAAAAGTATCACGT
GATCATTCGCGATTTTAGTCGCGATTGATTTATATCACATGTTTGAGTTA
TGCTCACGTGTTCAAAAGCAGCGTTGCGTAATTGGAACTTCCCTTCGAAC
CATGGCTCATTTCTAGGTTCATTTCAAACTTTAGCTTGGTGGTTACTGGA
TGTGCTCTCAATTTGGTTGTGGAAactacatcaaattttttttactggtt
gtgctttcaatgtttttggaaactacatcaaattttttttcaacattgaT
GGAGAGACAGAGGTGGATTTGGTAGTTGGTAAGAAAAATCTGACTTTTAA
GGAAAGCACTTTTGCCTATAGTTATAGAGCTTGATGGATGCCTTTCGACT
TAAGGGCTGGCTTTTAATAGACTTTTTCTCAACTTCTTATGAGCTAGAAT
TCGAGGATGGGTGTGAGTGTCTGAGTTTTTTCAGTCAAAGCTAATTTTGG
CTATAAAGCTTTGGGGTAGCCCCTGGGGAGGGACTTAGGCAAAATAAGGT
GGGGGGACGTGCCGCTGTTCAGGATTCTTTTTCAGGCCCTGAAAATCTCT
GATGGGGTCACAAAATTACCGTGGCTGATTCAGCCAATTNAAATTACCGT
GGCTGACTCATCAGCCAATTGTGTTTGTGTTTGAGTTGCAAACTCTCGGC
CGAACTTTCAGATTCTCGGCCGAGAGTTTAAATTTCCAGCCAAGAGCTTA
AAAAATCAGTGCCGACAGGGTCCAAATTTCGCCCAAATTTTGTCTATTAG
GGTAtggattttgtcaaaaattagtATCTGACTGGGTCCATTTTCAAACT
CAAGCGGCACATCCCTGTCGGTCGTCAAggtaagtgcccccccccctccc
ggggGTAGCCTGGAGACCTCAAAAATGGTTggtggatttggctgaaattt
tccaCACTTGGTCTCTGGATACATACGGGGGTGTACTTtccattttttgt
aaattttgatttttggggcctgtgGACAAgtttttttcagccttaaagcT
AATTTTGGCTTAAAAGCTtttgggcagcctggagacttcaaaaatggttg
gatttggctaaaattttgcacaattgtTCCTCAGGTGcaggtgttttttt
cattttttgaaaatttggatttttggggcctggggacgggTTTTTCACAA
ATGCTAAAATTGGGCCTCCAAATAGTTGGAAAAAtgctgaagttgagccc
agtgcatTGCGCACGCTCGACTATTTTTTTATCAGGCAGGGTTAAAAAAC
AGGGCAGCATGGGTCGCTGCACTCCTAGGTCCAGACCTACCGTTTCAGGA
CCGAAAAAACGGCTCATCTCATATGATGCCAGTGACACTTAATGGGTTAA
ATAGAAATGAGATTGAAAATGAGATTCCATTTAGAATGTCTATTGAGAGG
CATTGTTATGAAAAATGtttgacaaaacaaaaattttagaaaagcaacca
ttaaatcaaaattattcTGTGTTACATTTCTAGTAAAAtagtgaaaaaca
aagaaatgagtGATCCTTCTAACCCAATTGTTTTGTCATCTGGGGAAGAA
GATTTTTACATAGAACAAACAACCAATCCAGTCAAAAGCGAAGACTGCAA
AAGAGAAAACACTTACGTACTATCTGATAATGATGATGCTGTATCTTCAA
ATAATGACACTGTATCTTCAAGTAATGAAAACAATGTGAATGAATCTTTT
GAGGATGCCGAAATTGATGCTGGCTACATGAGCCCGCCTGATGAAGATGT
GAAATATTACAAGAACAACAAAAACATTCCAATATTCAAGATCACTTCGG
ATATTGAATATTCTCCTCAAACCCTCATCGACTTACTTGTCTCTCGGAAA
AGTGCAAGGGTGGCCACAAAAAAGCCTGTCAAAGTTCAGGATAATTTTac
atttattattgataccaaGAAATTGAAGAGCCCAAATGACTGGGCAGCAG
ATGATAATGGATGTTGGGAGAACAGGGGAAATTGCGGTACTATTGTTTCA
CTCGACGAAAATATGAAGATAGTGCATTCCTCTCGCATGAACAACAAAAA
GCGCACTGCACTGAAATCAGGAGAACTCCTAATATACAAAGTCTACTACA
GAAACAAAGCATACCACGACTACAAAAGAAACTCTTATGTTATCAAAACA
CAGGATGATAAAACACTCGATTTAGTGTTGGTTGAATACAGGTatcaatt
cttttatttttggagCTTAGCTTAGTCATAGCCTTAATATCATTTGAATC
AGGcaatttctgaaaataaagGAAGTGGTATCACTTCCTGGCCCATGACC
CTACCTAATTCTTACAGCCTATGGCTCTTAAATTAACCCTTTGTAGAGTC
ATAGACTACTTTCTACTGTCAATGAGACAAATTATGAAATCTACTTCAAT
TTAATTCTTATTAtattgaaagtattttttatcTCTGCTTACAGATATAT
CGGTGAAGTACGTCCAATTATTCCAAAACCACATGGACTggctaagaaaa
ataaaaaacctttCACTCCAACAGCTGAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00039690TCONS_00039690Clytia hemisphaericatranscript
TCONS_00039691TCONS_00039691Clytia hemisphaericatranscript
TCONS_00039692TCONS_00039692Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00039691-proteinTCONS_00039691-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002167supercontigsc0002167:10045..13873 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.22	0.11	0.09	0.17	1.36	0.74	1.32	1.47	0.48	0.7	0.89	0.83	0.72	1.27	0.88	1.7	1.19	1.16	1.34	1.43	1.17	0.94	0.07	1.33	1.14	0.88	0.09	0.38	0.62	0.09