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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039690 ID=TCONS_00039690|Name=TCONS_00039690|organism=Clytia hemisphaerica|type=transcript|length=842bp
aaattttttttcaacattgaTGGAGAGACAGAGGTGGATTTGGTAGTTGT
AAAAtagtgaaaaacaaagaaatgagtGATCCTTCTAACCCAATTGTTTT
GTCATCTGGGGAAGAAGATTTTTACATAGAACAAACAACCAATCCAGTCA
AAAGCGAAGACTGCAAAAGAGAAAACACTTACGTACTATCTGATAATGAT
GATGCTGTATCTTCAAATAATGACACTGTATCTTCAAGTAATGAAAACAA
TGTGAATGAATCTTTTGAGGATGCCGAAATTGATGCTGGCTACATGAGCC
CGCCTGATGAAGATGTGAAATATTACAAGAACAACAAAAACATTCCAATA
TTCAAGATCACTTCGGATATTGAATATTCTCCTCAAACCCTCATCGACTT
ACTTGTCTCTCGGAAAAGTGCAAGGGTGGCCACAAAAAAGCCTGTCAAAG
TTCAGGATAATTTTacatttattattgataccaaGAAATTGAAGAGCCCA
AATGACTGGGCAGCAGATGATAATGGATGTTGGGAGAACAGGGGAAATTG
CGGTACTATTGTTTCACTCGACGAAAATATGAAGATAGTGCATTCCTCTC
GCATGAACAACAAAAAGCGCACTGCACTGAAATCAGGAGAACTCCTAATA
TACAAAGTCTACTACAGAAACAAAGCATACCACGACTACAAAAGAAACTC
TTATGTTATCAAAACACAGGATGATAAAACACTCGATTTAGTGTTGGTTG
AATACAGATATATCGGTGAAGTACGTCCAATTATTCCAAAACCACATGGA
CTggctaagaaaaataaaaaacctttCACTCCAACAGCTGAA Run BLAST on NCBI transcript from alignment at sc0002167:10045..13873+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039690 ID=TCONS_00039690|Name=TCONS_00039690|organism=Clytia hemisphaerica|type=transcript|length=3829bp|location=Sequence derived from alignment at sc0002167:10045..13873+ (Clytia hemisphaerica)
aaattttttttcaacattgaTGGAGAGACAGAGGTGGATTTGGTAGTTGG
TAAGAAAAATCTGACTTTTAAGGAAAGCACTTTTGCCTATAGCTTGATGG
ATGCCTTTCGACTTAAGGGCTGGCTTTTAATAGACTTTTTCTCAACTTCT
TATGAGCTAGAATTTGAGGATGGGTGTGTGTGTCTGAGTTTTTTCAGTCA
AAGCTAATTTTGGCTATAAAGCTTTGGGGTAGCCCCTGGGGAGGGACTTA
GGCAAAATAAGGTGGGGAGACGTGCCGCTGTTCAGGATTCTTTTTCAGGC
CCTGAAAATCTCTGATGGGGTCACAAAATTACCATGGCTGATTCAGCCAA
TTGTGTTTGTGTTTGAGTTGCAAACTCTCGGCCGAACTTTCAGATTCTCG
GCCGAGAGTTTAAATTTCCGGCCAAGAGCTTAAAAAATCTCGGCAGACTA
TCGTTACGATCGGCCGAAAATGCATAGTCAGGGCCGAGAGGGTCCAAATT
TCGCCCAAATTTTGTCTATTAGGGTAtggattttgtcaaaaattagtATC
TGActgggtccatttttcaaactcaagCGGCACGTCCCTGTCGGTCGTCA
AGGTAAGTGCCCCCCGGGGTTAGCCTGGAGACCTCAAAAATGGTTGGTAG
CCTGGAGACCTCAAAAATGGTTggtggatttggctgaaattttccaCACT
TGGTCTCTGGGTACATACCCCCCATGTATGTATTATTGATACCAAGAAAT
TGAAGAGCCCAAATGACTGGGCAGCAGATGATAATGGATGTTGGGAGAAC
AGGGGAAATTACGGTACCATTNCCAACACCACACAAAACAGCTTATACCT
GCTTGAGAGATCTGAATGAGAGCTTCTTAACAATGCCAATTTCTTGAGTA
AATAGTATATATacggttggttcgaaacgcaggaaACAGGACACAGGAAA
CAGGacacaggacacaggacgcaggacACAGGACACCCATTACAGGCCAA
AAAGTTTCTCGAAATAGATAACAACCTAAGTTTTGAGGCAAATGGCTAGG
TTTATTTCATATTTCGTCAAAGTTTACCATCCAGAGGtaaaataaaatag
tttttaaagACCCTTCGAAAATCAACCAAATATTCACCCGAGCACGGCAA
TTTTccagactgaaaattgaaactttgcaGACCATCAAGAAAACACCCTT
TAAACTCTACTAGCCTGAATCCCGCCAATGACCAACGGAATAATTTTCCA
CGGCCTAGTATATTTCACAAGAGTGTGCAGATGTAAAAAAAGTATCACGT
GATCATTCGCGATTTTAGTCGCGATTGATTTATATCACATGTTTGAGTTA
TGCTCACGTGTTCAAAAGCAGCGTTGCGTAATTGGAACTTCCCTTCGAAC
CATGGCTCATTTCTAGGTTCATTTCAAACTTTAGCTTGGTGGTTACTGGA
TGTGCTCTCAATTTGGTTGTGGAAactacatcaaattttttttactggtt
gtgctttcaatgtttttggaaactacatcaaattttttttcaacattgaT
GGAGAGACAGAGGTGGATTTGGTAGTTGGTAAGAAAAATCTGACTTTTAA
GGAAAGCACTTTTGCCTATAGTTATAGAGCTTGATGGATGCCTTTCGACT
TAAGGGCTGGCTTTTAATAGACTTTTTCTCAACTTCTTATGAGCTAGAAT
TCGAGGATGGGTGTGAGTGTCTGAGTTTTTTCAGTCAAAGCTAATTTTGG
CTATAAAGCTTTGGGGTAGCCCCTGGGGAGGGACTTAGGCAAAATAAGGT
GGGGGGACGTGCCGCTGTTCAGGATTCTTTTTCAGGCCCTGAAAATCTCT
GATGGGGTCACAAAATTACCGTGGCTGATTCAGCCAATTNAAATTACCGT
GGCTGACTCATCAGCCAATTGTGTTTGTGTTTGAGTTGCAAACTCTCGGC
CGAACTTTCAGATTCTCGGCCGAGAGTTTAAATTTCCAGCCAAGAGCTTA
AAAAATCAGTGCCGACAGGGTCCAAATTTCGCCCAAATTTTGTCTATTAG
GGTAtggattttgtcaaaaattagtATCTGACTGGGTCCATTTTCAAACT
CAAGCGGCACATCCCTGTCGGTCGTCAAggtaagtgcccccccccctccc
ggggGTAGCCTGGAGACCTCAAAAATGGTTggtggatttggctgaaattt
tccaCACTTGGTCTCTGGATACATACGGGGGTGTACTTtccattttttgt
aaattttgatttttggggcctgtgGACAAgtttttttcagccttaaagcT
AATTTTGGCTTAAAAGCTtttgggcagcctggagacttcaaaaatggttg
gatttggctaaaattttgcacaattgtTCCTCAGGTGcaggtgttttttt
cattttttgaaaatttggatttttggggcctggggacgggTTTTTCACAA
ATGCTAAAATTGGGCCTCCAAATAGTTGGAAAAAtgctgaagttgagccc
agtgcatTGCGCACGCTCGACTATTTTTTTATCAGGCAGGGTTAAAAAAC
AGGGCAGCATGGGTCGCTGCACTCCTAGGTCCAGACCTACCGTTTCAGGA
CCGAAAAAACGGCTCATCTCATATGATGCCAGTGACACTTAATGGGTTAA
ATAGAAATGAGATTGAAAATGAGATTCCATTTAGAATGTCTATTGAGAGG
CATTGTTATGAAAAATGtttgacaaaacaaaaattttagaaaagcaacca
ttaaatcaaaattattcTGTGTTACATTTCTAGTAAAAtagtgaaaaaca
aagaaatgagtGATCCTTCTAACCCAATTGTTTTGTCATCTGGGGAAGAA
GATTTTTACATAGAACAAACAACCAATCCAGTCAAAAGCGAAGACTGCAA
AAGAGAAAACACTTACGTACTATCTGATAATGATGATGCTGTATCTTCAA
ATAATGACACTGTATCTTCAAGTAATGAAAACAATGTGAATGAATCTTTT
GAGGATGCCGAAATTGATGCTGGCTACATGAGCCCGCCTGATGAAGATGT
GAAATATTACAAGAACAACAAAAACATTCCAATATTCAAGATCACTTCGG
ATATTGAATATTCTCCTCAAACCCTCATCGACTTACTTGTCTCTCGGAAA
AGTGCAAGGGTGGCCACAAAAAAGCCTGTCAAAGTTCAGGATAATTTTac
atttattattgataccaaGAAATTGAAGAGCCCAAATGACTGGGCAGCAG
ATGATAATGGATGTTGGGAGAACAGGGGAAATTGCGGTACTATTGTTTCA
CTCGACGAAAATATGAAGATAGTGCATTCCTCTCGCATGAACAACAAAAA
GCGCACTGCACTGAAATCAGGAGAACTCCTAATATACAAAGTCTACTACA
GAAACAAAGCATACCACGACTACAAAAGAAACTCTTATGTTATCAAAACA
CAGGATGATAAAACACTCGATTTAGTGTTGGTTGAATACAGGTatcaatt
cttttatttttggagCTTAGCTTAGTCATAGCCTTAATATCATTTGAATC
AGGcaatttctgaaaataaagGAAGTGGTATCACTTCCTGGCCCATGACC
CTACCTAATTCTTACAGCCTATGGCTCTTAAATTAACCCTTTGTAGAGTC
ATAGACTACTTTCTACTGTCAATGAGACAAATTATGAAATCTACTTCAAT
TTAATTCTTATTAtattgaaagtattttttatcTCTGCTTACAGATATAT
CGGTGAAGTACGTCCAATTATTCCAAAACCACATGGACTggctaagaaaa
ataaaaaacctttCACTCCAACAGCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039690-exon-sc0002167-1491911889:10045..10093 | TCONS_00039690-exon-sc0002167-1491911889:10045..10093 | Clytia hemisphaerica | exon |
| TCONS_00039690-exon-sc0002167-1510915933:10045..10093 | TCONS_00039690-exon-sc0002167-1510915933:10045..10093 | Clytia hemisphaerica | exon |
| TCONS_00039690-exon-sc0002167-1575043694:10045..10093 | TCONS_00039690-exon-sc0002167-1575043694:10045..10093 | Clytia hemisphaerica | exon |
| TCONS_00039690-exon-sc0002167-1491911889:12828..13535 | TCONS_00039690-exon-sc0002167-1491911889:12828..13535 | Clytia hemisphaerica | exon |
| TCONS_00039690-exon-sc0002167-1510915933:12828..13535 | TCONS_00039690-exon-sc0002167-1510915933:12828..13535 | Clytia hemisphaerica | exon |
| TCONS_00039690-exon-sc0002167-1575043694:12828..13535 | TCONS_00039690-exon-sc0002167-1575043694:12828..13535 | Clytia hemisphaerica | exon |
| TCONS_00039690-exon-sc0002167-1491911889:13789..13873 | TCONS_00039690-exon-sc0002167-1491911889:13789..13873 | Clytia hemisphaerica | exon |
| TCONS_00039690-exon-sc0002167-1510915933:13789..13873 | TCONS_00039690-exon-sc0002167-1510915933:13789..13873 | Clytia hemisphaerica | exon |
| TCONS_00039690-exon-sc0002167-1575043694:13789..13873 | TCONS_00039690-exon-sc0002167-1575043694:13789..13873 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002167 | supercontig | sc0002167:10045..13873 + |
Blast
The following BLAST results are available for this feature:
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