|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039691 ID=TCONS_00039691|Name=TCONS_00039691|organism=Clytia hemisphaerica|type=transcript|length=842bp
aaattttttttcaacattgaTGGAGAGACAGAGGTGGATTTGGTAGTTGT
AAAAtagtgaaaaacaaagaaatgagtGATCCTTCTAACCCAATTGTTTT
GTCATCTGGGGAAGAAGATTTTTACATAGAACAAACAACCAATCCAGTCA
AAAGCGAAGACTGCAAAAGAGAAAACACTTACGTACTATCTGATAATGAT
GATGCTGTATCTTCAAATAATGACACTGTATCTTCAAGTAATGAAAACAA
TGTGAATGAATCTTTTGAGGATGCCGAAATTGATGCTGGCTACATGAGCC
CGCCTGATGAAGATGTGAAATATTACAAGAACAACAAAAACATTCCAATA
TTCAAGATCACTTCGGATATTGAATATTCTCCTCAAACCCTCATCGACTT
ACTTGTCTCTCGGAAAAGTGCAAGGGTGGCCACAAAAAAGCCTGTCAAAG
TTCAGGATAATTTTacatttattattgataccaaGAAATTGAAGAGCCCA
AATGACTGGGCAGCAGATGATAATGGATGTTGGGAGAACAGGGGAAATTG
CGGTACTATTGTTTCACTCGACGAAAATATGAAGATAGTGCATTCCTCTC
GCATGAACAACAAAAAGCGCACTGCACTGAAATCAGGAGAACTCCTAATA
TACAAAGTCTACTACAGAAACAAAGCATACCACGACTACAAAAGAAACTC
TTATGTTATCAAAACACAGGATGATAAAACACTCGATTTAGTGTTGGTTG
AATACAGATATATCGGTGAAGTACGTCCAATTATTCCAAAACCACATGGA
CTggctaagaaaaataaaaaacctttCACTCCAACAGCTGAA Run BLAST on NCBI protein sequence of TCONS_00039691-protein >TCONS_00039691-protein ID=TCONS_00039691-protein|Name=TCONS_00039691-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
MSDPSNPIVLSSGEEDFYIEQTTNPVKSEDCKRENTYVLSDNDDAVSSNN
DTVSSSNENNVNESFEDAEIDAGYMSPPDEDVKYYKNNKNIPIFKITSDI
EYSPQTLIDLLVSRKSARVATKKPVKVQDNFTFIIDTKKLKSPNDWAADD
NGCWENRGNCGTIVSLDENMKIVHSSRMNNKKRTALKSGELLIYKVYYRN
KAYHDYKRNSYVIKTQDDKTLDLVLVEYRYIGEVRPIIPKPHGLAKKNKK
PFTPTAE Run BLAST on NCBI transcript from alignment at sc0002167:11574..13873+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039691 ID=TCONS_00039691|Name=TCONS_00039691|organism=Clytia hemisphaerica|type=transcript|length=2300bp|location=Sequence derived from alignment at sc0002167:11574..13873+ (Clytia hemisphaerica)
aaattttttttcaacattgaTGGAGAGACAGAGGTGGATTTGGTAGTTGG
TAAGAAAAATCTGACTTTTAAGGAAAGCACTTTTGCCTATAGTTATAGAG
CTTGATGGATGCCTTTCGACTTAAGGGCTGGCTTTTAATAGACTTTTTCT
CAACTTCTTATGAGCTAGAATTCGAGGATGGGTGTGAGTGTCTGAGTTTT
TTCAGTCAAAGCTAATTTTGGCTATAAAGCTTTGGGGTAGCCCCTGGGGA
GGGACTTAGGCAAAATAAGGTGGGGGGACGTGCCGCTGTTCAGGATTCTT
TTTCAGGCCCTGAAAATCTCTGATGGGGTCACAAAATTACCGTGGCTGAT
TCAGCCAATTNAAATTACCGTGGCTGACTCATCAGCCAATTGTGTTTGTG
TTTGAGTTGCAAACTCTCGGCCGAACTTTCAGATTCTCGGCCGAGAGTTT
AAATTTCCAGCCAAGAGCTTAAAAAATCAGTGCCGACAGGGTCCAAATTT
CGCCCAAATTTTGTCTATTAGGGTAtggattttgtcaaaaattagtATCT
GACTGGGTCCATTTTCAAACTCAAGCGGCACATCCCTGTCGGTCGTCAAg
gtaagtgcccccccccctcccggggGTAGCCTGGAGACCTCAAAAATGGT
TggtggatttggctgaaattttccaCACTTGGTCTCTGGATACATACGGG
GGTGTACTTtccattttttgtaaattttgatttttggggcctgtgGACAA
gtttttttcagccttaaagcTAATTTTGGCTTAAAAGCTtttgggcagcc
tggagacttcaaaaatggttggatttggctaaaattttgcacaattgtTC
CTCAGGTGcaggtgtttttttcattttttgaaaatttggatttttggggc
ctggggacgggTTTTTCACAAATGCTAAAATTGGGCCTCCAAATAGTTGG
AAAAAtgctgaagttgagcccagtgcatTGCGCACGCTCGACTATTTTTT
TATCAGGCAGGGTTAAAAAACAGGGCAGCATGGGTCGCTGCACTCCTAGG
TCCAGACCTACCGTTTCAGGACCGAAAAAACGGCTCATCTCATATGATGC
CAGTGACACTTAATGGGTTAAATAGAAATGAGATTGAAAATGAGATTCCA
TTTAGAATGTCTATTGAGAGGCATTGTTATGAAAAATGtttgacaaaaca
aaaattttagaaaagcaaccattaaatcaaaattattcTGTGTTACATTT
CTAGTAAAAtagtgaaaaacaaagaaatgagtGATCCTTCTAACCCAATT
GTTTTGTCATCTGGGGAAGAAGATTTTTACATAGAACAAACAACCAATCC
AGTCAAAAGCGAAGACTGCAAAAGAGAAAACACTTACGTACTATCTGATA
ATGATGATGCTGTATCTTCAAATAATGACACTGTATCTTCAAGTAATGAA
AACAATGTGAATGAATCTTTTGAGGATGCCGAAATTGATGCTGGCTACAT
GAGCCCGCCTGATGAAGATGTGAAATATTACAAGAACAACAAAAACATTC
CAATATTCAAGATCACTTCGGATATTGAATATTCTCCTCAAACCCTCATC
GACTTACTTGTCTCTCGGAAAAGTGCAAGGGTGGCCACAAAAAAGCCTGT
CAAAGTTCAGGATAATTTTacatttattattgataccaaGAAATTGAAGA
GCCCAAATGACTGGGCAGCAGATGATAATGGATGTTGGGAGAACAGGGGA
AATTGCGGTACTATTGTTTCACTCGACGAAAATATGAAGATAGTGCATTC
CTCTCGCATGAACAACAAAAAGCGCACTGCACTGAAATCAGGAGAACTCC
TAATATACAAAGTCTACTACAGAAACAAAGCATACCACGACTACAAAAGA
AACTCTTATGTTATCAAAACACAGGATGATAAAACACTCGATTTAGTGTT
GGTTGAATACAGGTatcaattcttttatttttggagCTTAGCTTAGTCAT
AGCCTTAATATCATTTGAATCAGGcaatttctgaaaataaagGAAGTGGT
ATCACTTCCTGGCCCATGACCCTACCTAATTCTTACAGCCTATGGCTCTT
AAATTAACCCTTTGTAGAGTCATAGACTACTTTCTACTGTCAATGAGACA
AATTATGAAATCTACTTCAATTTAATTCTTATTAtattgaaagtattttt
tatcTCTGCTTACAGATATATCGGTGAAGTACGTCCAATTATTCCAAAAC
CACATGGACTggctaagaaaaataaaaaacctttCACTCCAACAGCTGAA
Coding sequence (CDS) from alignment at sc0002167:11574..13873+ >TCONS_00039691 ID=TCONS_00039691|Name=TCONS_00039691|organism=Clytia hemisphaerica|type=CDS|length=1542bp|location=Sequence derived from alignment at sc0002167:11574..13873+ (Clytia hemisphaerica)
atgagtGATCCTTCTAACCCAATTGTTTTGTCATCTGGGGAAGAAGATTT
TTACATAGAACAAACAACCAATCCAGTCAAAAGCGAAGACTGCAAAAGAG
AAAACACTTACGTACTATCTGATAATGATGATGCTGTATCTTCAAATAAT
GACACTGTATCTTCAAGTAATGAAAACAATGTGAATGAATCTTTTGAGGA
TGCCGAAATTGATGCTGGCTACATGAGCCCGCCTGATGAAGATGTGAAAT
ATTACAAGAACAACAAAAACATTCCAATATTCAAGATCACTTCGGATATT
GAATATTCTCCTCAAACCCTCATCGACTTACTTGTCTCTCGGAAAAGTGC
AAGGGTGGCCACAAAAAAGCCTGTCAAAGTTCAGGATAATTTTacattta
ttattgataccaaGAAATTGAAGAGCCCAAATGACTGGGCAGCAGATGAT
AATGGATGTTGGGAGAACAGGGGAAATTGCGGTACTATTGTTTCACTCGA
CGAAAATATGAAGATAGTGCATTCCTCTCGCATGAACAACAAAAAGCGCA
CTGCACTGAAATCAGGAGAACTCCTAATATACAAAGTCTACTACAGAAAC
AAAGCATACCACGACTACAAAAGAAACTCTTATGTTATCAAAACACAGGA
TGATAAAACACTCGATTTAGTGTTGGTTGAATACAGATATATCGGTGAAG
TACGTCCAATTATTCCAAAACCACATGGACTggctaagaaaaataaaaaa
cctttCACTCCAACAGCTGAAatgagtGATCCTTCTAACCCAATTGTTTT
GTCATCTGGGGAAGAAGATTTTTACATAGAACAAACAACCAATCCAGTCA
AAAGCGAAGACTGCAAAAGAGAAAACACTTACGTACTATCTGATAATGAT
GATGCTGTATCTTCAAATAATGACACTGTATCTTCAAGTAATGAAAACAA
TGTGAATGAATCTTTTGAGGATGCCGAAATTGATGCTGGCTACATGAGCC
CGCCTGATGAAGATGTGAAATATTACAAGAACAACAAAAACATTCCAATA
TTCAAGATCACTTCGGATATTGAATATTCTCCTCAAACCCTCATCGACTT
ACTTGTCTCTCGGAAAAGTGCAAGGGTGGCCACAAAAAAGCCTGTCAAAG
TTCAGGATAATTTTacatttattattgataccaaGAAATTGAAGAGCCCA
AATGACTGGGCAGCAGATGATAATGGATGTTGGGAGAACAGGGGAAATTG
CGGTACTATTGTTTCACTCGACGAAAATATGAAGATAGTGCATTCCTCTC
GCATGAACAACAAAAAGCGCACTGCACTGAAATCAGGAGAACTCCTAATA
TACAAAGTCTACTACAGAAACAAAGCATACCACGACTACAAAAGAAACTC
TTATGTTATCAAAACACAGGATGATAAAACACTCGATTTAGTGTTGGTTG
AATACAGATATATCGGTGAAGTACGTCCAATTATTCCAAAACCACATGGA
CTggctaagaaaaataaaaaacctttCACTCCAACAGCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039691-exon-sc0002167-1491911889:11574..11622 | TCONS_00039691-exon-sc0002167-1491911889:11574..11622 | Clytia hemisphaerica | exon |
| TCONS_00039691-exon-sc0002167-1510915933:11574..11622 | TCONS_00039691-exon-sc0002167-1510915933:11574..11622 | Clytia hemisphaerica | exon |
| TCONS_00039691-exon-sc0002167-1575043694:11574..11622 | TCONS_00039691-exon-sc0002167-1575043694:11574..11622 | Clytia hemisphaerica | exon |
| TCONS_00039691-exon-sc0002167-1491911889:12828..13535 | TCONS_00039691-exon-sc0002167-1491911889:12828..13535 | Clytia hemisphaerica | exon |
| TCONS_00039691-exon-sc0002167-1510915933:12828..13535 | TCONS_00039691-exon-sc0002167-1510915933:12828..13535 | Clytia hemisphaerica | exon |
| TCONS_00039691-exon-sc0002167-1575043694:12828..13535 | TCONS_00039691-exon-sc0002167-1575043694:12828..13535 | Clytia hemisphaerica | exon |
| TCONS_00039691-exon-sc0002167-1491911889:13789..13873 | TCONS_00039691-exon-sc0002167-1491911889:13789..13873 | Clytia hemisphaerica | exon |
| TCONS_00039691-exon-sc0002167-1510915933:13789..13873 | TCONS_00039691-exon-sc0002167-1510915933:13789..13873 | Clytia hemisphaerica | exon |
| TCONS_00039691-exon-sc0002167-1575043694:13789..13873 | TCONS_00039691-exon-sc0002167-1575043694:13789..13873 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002167 | supercontig | sc0002167:11574..13873 + |
Blast
The following BLAST results are available for this feature:
|
