TCONS_00039692 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039692
Unique NameTCONS_00039692
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1391

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039692 ID=TCONS_00039692|Name=TCONS_00039692|organism=Clytia hemisphaerica|type=transcript|length=1391bp
atttggctgaaattttccaCACTTGGTCTCTGGATACATACGGGGGTGTA
CTTtccattttttgtaaattttgatttttggggcctgtgGACAAgttttt
ttcagccttaaagcTAATTTTGGCTTAAAAGCTtttgggcagcctggaga
cttcaaaaatggttggatttggctaaaattttgcacaattgtTCCTCAGG
TGcaggtgtttttttcattttttgaaaatttggatttttggggcctgggg
acgggTTTTTCACAAATGCTAAAATTGGGCCTCCAAATAGTTGGAAAAAt
gctgaagttgagcccagtgcatTGCGCACGCTCGACTATTTTTTTATCAG
GCAGGGTTAAAAAACAGGGCAGCATGGGTCGCTGCACTCCTAGGTCCAGA
CCTACCGTTTCAGGACCGAAAAAACGGCTCATCTCATATGATGCCAGTGA
CACTTAATGGGTTAAATAGAAATGAGATTGAAAATGAGATTCCATTTAGA
ATGTCTATTGAGAGGCATTGTTATGAAAAATGtttgacaaaacaaaaatt
ttagaaaagcaaccattaaatcaaaattattcTGTGTTACATTTCTAGTA
AAAtagtgaaaaacaaagaaatgagtGATCCTTCTAACCCAATTGTTTTG
TCATCTGGGGAAGAAGATTTTTACATAGAACAAACAACCAATCCAGTCAA
AAGCGAAGACTGCAAAAGAGAAAACACTTACGTACTATCTGATAATGATG
ATGCTGTATCTTCAAATAATGACACTGTATCTTCAAGTAATGAAAACAAT
GTGAATGAATCTTTTGAGGATGCCGAAATTGATGCTGGCTACATGAGCCC
GCCTGATGAAGATGTGAAATATTACAAGAACAACAAAAACATTCCAATAT
TCAAGATCACTTCGGATATTGAATATTCTCCTCAAACCCTCATCGACTTA
CTTGTCTCTCGGAAAAGTGCAAGGGTGGCCACAAAAAAGCCTGTCAAAGT
TCAGGATAATTTTacatttattattgataccaaGAAATTGAAGAGCCCAA
ATGACTGGGCAGCAGATGATAATGGATGTTGGGAGAACAGGGGAAATTGC
GGTACTATTGTTTCACTCGACGAAAATATGAAGATAGTGCATTCCTCTCG
CATGAACAACAAAAAGCGCACTGCACTGAAATCAGGAGAACTCCTAATAT
ACAAAGTCTACTACAGAAACAAAGCATACCACGACTACAAAAGAAACTCT
TATGTTATCAAAACACAGGATGATAAAACACTCGATTTAGTGTTGGTTGA
ATACAGATATATCGGTGAAGTACGTCCAATTATTCCAAAACCACATGGAC
TggctaagaaaaataaaaaacctttCACTCCAACAGCTGAA
Run BLAST on NCBI

transcript from alignment at sc0002167:12230..13873+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039692 ID=TCONS_00039692|Name=TCONS_00039692|organism=Clytia hemisphaerica|type=transcript|length=1644bp|location=Sequence derived from alignment at sc0002167:12230..13873+ (Clytia hemisphaerica)
atttggctgaaattttccaCACTTGGTCTCTGGATACATACGGGGGTGTA
CTTtccattttttgtaaattttgatttttggggcctgtgGACAAgttttt
ttcagccttaaagcTAATTTTGGCTTAAAAGCTtttgggcagcctggaga
cttcaaaaatggttggatttggctaaaattttgcacaattgtTCCTCAGG
TGcaggtgtttttttcattttttgaaaatttggatttttggggcctgggg
acgggTTTTTCACAAATGCTAAAATTGGGCCTCCAAATAGTTGGAAAAAt
gctgaagttgagcccagtgcatTGCGCACGCTCGACTATTTTTTTATCAG
GCAGGGTTAAAAAACAGGGCAGCATGGGTCGCTGCACTCCTAGGTCCAGA
CCTACCGTTTCAGGACCGAAAAAACGGCTCATCTCATATGATGCCAGTGA
CACTTAATGGGTTAAATAGAAATGAGATTGAAAATGAGATTCCATTTAGA
ATGTCTATTGAGAGGCATTGTTATGAAAAATGtttgacaaaacaaaaatt
ttagaaaagcaaccattaaatcaaaattattcTGTGTTACATTTCTAGTA
AAAtagtgaaaaacaaagaaatgagtGATCCTTCTAACCCAATTGTTTTG
TCATCTGGGGAAGAAGATTTTTACATAGAACAAACAACCAATCCAGTCAA
AAGCGAAGACTGCAAAAGAGAAAACACTTACGTACTATCTGATAATGATG
ATGCTGTATCTTCAAATAATGACACTGTATCTTCAAGTAATGAAAACAAT
GTGAATGAATCTTTTGAGGATGCCGAAATTGATGCTGGCTACATGAGCCC
GCCTGATGAAGATGTGAAATATTACAAGAACAACAAAAACATTCCAATAT
TCAAGATCACTTCGGATATTGAATATTCTCCTCAAACCCTCATCGACTTA
CTTGTCTCTCGGAAAAGTGCAAGGGTGGCCACAAAAAAGCCTGTCAAAGT
TCAGGATAATTTTacatttattattgataccaaGAAATTGAAGAGCCCAA
ATGACTGGGCAGCAGATGATAATGGATGTTGGGAGAACAGGGGAAATTGC
GGTACTATTGTTTCACTCGACGAAAATATGAAGATAGTGCATTCCTCTCG
CATGAACAACAAAAAGCGCACTGCACTGAAATCAGGAGAACTCCTAATAT
ACAAAGTCTACTACAGAAACAAAGCATACCACGACTACAAAAGAAACTCT
TATGTTATCAAAACACAGGATGATAAAACACTCGATTTAGTGTTGGTTGA
ATACAGGTatcaattcttttatttttggagCTTAGCTTAGTCATAGCCTT
AATATCATTTGAATCAGGcaatttctgaaaataaagGAAGTGGTATCACT
TCCTGGCCCATGACCCTACCTAATTCTTACAGCCTATGGCTCTTAAATTA
ACCCTTTGTAGAGTCATAGACTACTTTCTACTGTCAATGAGACAAATTAT
GAAATCTACTTCAATTTAATTCTTATTAtattgaaagtattttttatcTC
TGCTTACAGATATATCGGTGAAGTACGTCCAATTATTCCAAAACCACATG
GACTggctaagaaaaataaaaaacctttCACTCCAACAGCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023996XLOC_023996Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039692-exon-sc0002167-1491911889:12230..13535TCONS_00039692-exon-sc0002167-1491911889:12230..13535Clytia hemisphaericaexon
TCONS_00039692-exon-sc0002167-1510915933:12230..13535TCONS_00039692-exon-sc0002167-1510915933:12230..13535Clytia hemisphaericaexon
TCONS_00039692-exon-sc0002167-1575043694:12230..13535TCONS_00039692-exon-sc0002167-1575043694:12230..13535Clytia hemisphaericaexon
TCONS_00039692-exon-sc0002167-1491911889:13789..13873TCONS_00039692-exon-sc0002167-1491911889:13789..13873Clytia hemisphaericaexon
TCONS_00039692-exon-sc0002167-1510915933:13789..13873TCONS_00039692-exon-sc0002167-1510915933:13789..13873Clytia hemisphaericaexon
TCONS_00039692-exon-sc0002167-1575043694:13789..13873TCONS_00039692-exon-sc0002167-1575043694:13789..13873Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002167supercontigsc0002167:12230..13873 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.193867	0.108656	0.0731689	0.166243	0.697176	0.0688648	0.0778892	0.233342	0.163368	0.202358	0.130942	0.692292	0.128935	0.267801	0.139867	0.275654	0.242559	0.198892	0.13739	0.143769	0.687288	0.0914277	0	0.269452	0.0693823	0.371532	0.0937538	0.0945672	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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