XLOC_023623 (gene) - C. hemisphaerica

Overview
NameXLOC_023623
Unique NameXLOC_023623
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0002043:23869..30109+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_023623 ID=XLOC_023623|Name=XLOC_023623|organism=Clytia hemisphaerica|type=gene|length=6241bp|location=Sequence derived from alignment at sc0002043:23869..30109+ (Clytia hemisphaerica)
gaaaaatgaaaaaacaaattctaaaaacctaatatatttttcatattttt caaaatctgtaaCCATCAATTTTCTGATTCTCAAGCCAccccaaaaatct aagattTCGGAGATGACAAAAGAACAGAAATAATTACCAGTCTGGAAAGG AGGGCCTATACGCCGGATATATCCGGCGTAGACTTTATCTTAGGATCGGC GTATTGGCGTGAGCTCAATAATTTTAACCTTCCTTGGCGTATCAAATCTG TGAATTTCGGCGTAGGAATCGATTTTTTGTCCAGTATATCTTCGCCGCTC TTCTTCTCCTTTCAGATTGTTTACACTACCTTGTTCTTTTTAAAATCCGT TTAAAGCTCTTCATCACGTGACTTTCTACACCTAGACTCCATTTCCACTA CATTGTAATAAAATGTAAAACGGGCGTAAAAAAAAAACGCACCCTCTATT GAAAAACTCGATATCGGTACCAAAATAAACCTCACATTTTTTTCGGGGAA TCCAATATGGCGGATGCACGAGACAACGAATTAGAGataattgaagatga aaatgaagttgTAAATAGTGTAAATAATGGTGTAAAAAGTGTAAATttaa tttgtaaagtttgtaatAATCCATGTGGCGTGGCTCACAGTTGCCTGAGA TGTGAACGGTACACTCACTTAATTTGTGGGGACCCACCAGCTGGggaaga acaagaagaaggataGGGTCAAAAGGTTATTTGTTTTTTATGCAGTGGGA AAAGGAAGGACGAGGGTAAGTcggtttgaaaatttcaaattaagttAGGA GTAGACACAGAATTATGAATTCTATGGACGATATTATCGTTAAATCGTAA CTTTATCTCTGACGAATAAAAAGTGTGGATTTGTGCTTTGGTGGGCTTTA CAAACTGGGTCCTTTTCAGGATAGATTTACTTGTCTTGATAGCTTAGTGC AGAAGAGCTGGTAGTCTCTATCGAGATGCTCGTTAAAATTGCACACATTC ATTGAATCCGCTACCAATTCAGTGAAGAGCTATTGAGGCGTAATCTATAA TCAGTCTTTGGGCCAcactttttatgtatttttaaatacataTTTCTCAT AAAGCTTAAATCTGGCAAATTTCTGCACTTACATgcttttcaattaaaaa tgtattttcaataatttggGTTGGGGCCCCATATTACACACATCAATAAT AAGCTACGAGAATATTTTTTTGGCTTATCACTTTGCTACTTACTACAGTA CACagtaacttttttaataaaataaaaaaaagaagacaataataaaaata agactCTGACAACGCACGTGGTACTTTTCATGTTTGAAAGATCAAATGGA TCAAATTAAatgaacatttttttcttttacatagTGAAATGTAAAAGGTT TTCCTCTCTTTCTATTATTTGGTTTATTGGAGAGgcgttcttcattattt taAGAGTACATACACGAAATACAAATATAAATAATAAGTTGCGATTATTT TAGCTTTACTATCGCAGTTGATTATTGATAGGTGTAACGGGGATTTTAAT AAGAAAGATAAAAATGTCACAGATAAACTCATGTGTAACCTCGCTAATGT GTACTCTCTCGCTCATGTTTGTAGGCAATTCCTCTGAAACGTCCGCttca aaaaaacgaaaacacTCGCAAGAGGCGTGGAAGGCAAGGTTTAAAAGACC TAAAATCGGAGAGACAAACACAAACACTGATAAGAAAACTGACtctcaaa acaattcaaagaagaCAGCCATCGAGGAAAAATCATTTACGTGTAAAGAG TGCCTTGAAGGGTTTTTTACCAAAAAGAATCCTGCAAAAGTAGGGTCAAC TAGAATCTGTAGAAATGATTCATCAAGTATACAACGACACAAATCCACAT GGCATAAATTAACAGGCAAATGTACGATTGTCCCTACTAACTCAGTGGAC ATAGCTAATCTAAAGAAGAAATATGAACGAAAAAAGGACGATAGTGGTAG TGACAATGAAGCAACTGAAAGCCCAAACCAAGCCTCCGACCAAGCCTCTA CTACTGCTACTTCAGTTCATGAAAGTTCTATAGCCAAGAAACCTACACAA ACCACAATGTTGAGTGTTGCATCAAATAATCTTGAAAAAGACTCTTCAAC ACCAAAGGACGAAGATCTCatattaaaaaaactgaatGAGTTGACTTTAG AACTCAGGGGTATGAAAACTCAACATGAAAGCATATGCAGTATTGCATTT AAAGATACAGAGAAAAGTGTCCTACTGGAGGCTTTACGAAAGTGTGAAAA CCTAGTTGACTTTCTGAAAgtttccaaaagttttgaatggTTTTGTGACG AAAAAACAGAAGAAGGGATTTTGAGGTGTAAAGCCTGTTTTCACATGTAT CTTAAAAACAATCCTAGATCATCTAGTTTGAACCCAACACAAGTCCGTAT GGTTACAAAGGGAAATGAATTCTCCACAGGAATGTCATATGACAAATTGA AAACACGGCAGTTACTACAAGGAGGTAATGACACCTGGAGACATTTAAAA AACCTCATGATCAATCATCTTTGCCTAATTGGAGAAGGATCAAACTTTCA CTTCGAGAAGATGAAAATACAAGACGAAATGTTTTTCGTGCAGCAATTTC GGCCATTAAATTAGGGTCTGCTGCCACCCATTTTGAAACTTTGATATCGT TGTTGAAGAGTTGGAAACATAGGGCATAGCAGGAAAAACTTTAATGACAT CTTGCATTGTATCGAACAGGCTATGAATAAGCAAATTAACGACTGGCTAA GCACACCCCTACCATCAACTGGTCTACCACCACATTTCTGGGGAACTGTT GATAAAGCTACACCTTCAAGAGTCACAAACCAAGCCGTCATCATAGTTGC ACGGGATCAAAATGGAAATTGTTGTCCTATCCCAGTAGCGGCGCCCGAAA TCTACAGAGAGCTTGATGCAGCAACCTATGATGAACTTGCAACCCAGATG GTTGATGctataaaagaaaactttccaTCCAGCTTGCTTTCAAGGTATCC CAGGACAATACAATGATAAATTGTATTTTCCTGGCATATGGTGATTTAAA AGTAGCTTCTGAAAACTTCTGATATGTTAATCTTCCCCAATATTAAGACA TTGTAACTGCCTTGTCATCACTTCTGCTAACGCAATCAGTAGTAAGAAAT CACTATCCGAAAATTTAATTGATCTAAAATTAGAACTGATTGTGGACTTA TAGACAGTCGATCTCCTTCAGTGtattgttttttcttatttgtgTCAGGA TGTGTGGTGCAGCAGCCGACGACCCTTACCAAACTAAAAACTTTCGCTCA TCTTTGGTTGAACATGTTGGGacagattttgatgatattctTAGCTTCCC TGTAACATGGGACCCTGGACATTTGCTCAATCTAGCAGTTACTGATGTTA GAGACAATGATACGATTGGAGGCTCGTATATTAGGTTAACTTACTTTTCG ATTATTTTTTGATTACTTAACAAATTCcaaacaaaatgcttttctCAAAA GTAGAAATGGACAAGTTATTTCACAACTCTATTTATCTCTAAAGAACAAA TTCATTTTTATGTTTGTAACAATTGTTTCAGgactttaattttcattttg ttaatGTCAtgattttatgatatatttATCTTGTAGCTTGTTCATCAAAC GATCAAATCTGTTCAATCAATTGTTAAGGAATGGAAAGGGCTTCGCAACC AGTATCATATGCCACTCAAAGGTTTACCAGTTCATCCTACAACCAATggg ttaaaattttcaagtcttATGGTGCTTATATTCAAGCTTTCGAGCACTTA CACCCCAATAGAAGTGACGATGAAGAATATCAATTCCAGATAAAAGGAGC AGATTATGTATTTGATATGTTACTCCTATTGGACACTTTGAAACCATTGG TTGATGTTATGCTACAGCTGCAATCCTTGGATAATCCTGTCTGGAAACTT AAAAAGTTGTTCCCTGAATTGATTGATCGATTGAAAGAAGCAGGTATGGT TTCATTTCTATTAAAATTATCTGTCTTATCATTCATGAATTGTATCTGTC GTCAATTCCGTATAATCGTCTGCAATTTCGAAGTTGTAAACATATTAAAA TAATGGATTTCTCTTTTCAAAAGGAGCAAGAGATAAAGACGCTCTACCCA AACTCACCAAACACGAAAAAGATGTTAAAGTTTGTGGAAAATTCGATGGA GTAACCCTATTGGCAGGATGGTTACCGAAAAGAAATGCAGACGGGACTTT CACGTGGACATCACGAAACAAGACTGACATCCGTAAAGAACATTCAGCGT ATGTATTTTACTTGTTCTATTATTGATTTACGTTTAATGATTGGTGTAAG TGTTTCCAAGTCTTCAGTGGTTATAACCTATTTTTACATAAAACATGCCA TTTGCCAACCTTTATTCTATGCTGCAAGAAAATTCCAAAAAGGTTCAAAT TCTCTGCCTAATGCCAGTATGTAAATAAATGTTTTACGAATTTTGAAGCA TATGCATTTCTCTATTCTATTCTTTAGATTTGTGAAAGAACTTATCGAAG CCTTAGAGAAACGAATAAAGCCAGAAATCGAGAAAGACCACATCGAAACA CTGGCAGTTCTTGATGCCGCTGAATTGGTAAAATTGTCATGTGGTAAACG AGAGAGGGGCAAGATTGCATTTGAACGAGAGGAGGGGGAAATTGAAAGTT ATGGTGTCAAAGAgattgaaaaacaaatgaaaagtaTTTCGAAGGCCGAT CACATTTCAGACTCAAGCTTAAACTTTGATAGTCGAATGAGGTAAAAGGA TTCACTTAAATTTCATCCTTTTCTAAAATCTGTTACAATCTGTTTCATTA TTTTGGGTTGTAGAAAAATCGATATTAGTCATCTCATAGCAAATTacgaa aaaataggaaaaaatattttattttagatAATCTCCCTTTGGGGAAGTGG TTGATTAATTTTGGCTTTTAGTTGTCTAGGGGggctttcaaaaacatttt ttggctttcctaaaaacaaaacattttttagatttaattaAAAGGTAATT ATTAAAATCTGAAAGAGAGTGGCTCATGTAAAGGCTGATGATAggttgta atttttttcagtcatAGGTACATCGGAAATATAAAAAAGGCGGTATGTGA GGCGATTTGGGAAAACAAAGCGAATTGGTTTCTTGATGCAGACAACAAGA TAATTGAAAAACGAGAAAAACTAATATCATTCAAAGAGATCAAGTGTCGA gatttttttcacaagtttgagCTAAAATACGATAAATCAGTTGAAATCGG AATCCTTGACCAATCGGAAGTATATAAGTCATTCTACAGCAACAACTTCG TCGTCTCAACGGCTGGAAAAGAAGGATGCACCATCATAGACGTAGCTCTT TCAAAAGGGGGGCCAGAGGCTATAGCGGAAAGTTTTTACAACTGCATGCG TAACCAGCAACAGCATGGGGGACAGTCGAATTGGGTTCTAACGACGAGAG CAAAAATTGCCTGGTGCCTTCCATCCATCGATAGATTCGATCGTTTGATA AAAGACGCTGTTGAGATTTATATCAATGGGGACGAAAAGATAAAACCCCA TCGTGAAAACATGTTTTTCACGTCGTCCAGACACAATAGCTACAAAGTAT CAAAGGTTGTTGATCGCATTAATGCTGATTGTGGTCGATGTCCTTTCTTG GTATCCTCATAATGAGATCGGACTAATTGTTTAGACTTGATATTGTTTCg ttatgttattattttatcatagaatttttcttggaaatttaGTCCTCGTA TCTCCCGTGTCTCCATAACCAAAGAAAAGCTTTCTCGGTTGGTTTAACTG TGTGTGATACGAGTTTCCATTACGATAAtctcaacaaatattttaaatct tcCAGTTACCATTTCAATTTCTTCTCGTTGCTTTTTGTTTATTCTAGTAT TAGGTTGAGTCCGTCTCTTTTTTATCAGCAAGATTAAAGTTAAAATGATT ATAAATTTACTTTTCAAGACACACTAACGTAACATCGTTCTCTTCTTCTT GAGAATatgtttttacttttattttatttcatcttTTACCTGAAAGATAC ATAAAGATACATAGaattaataaagaaaaatgaccTTATTTTAGCCAAAA TTAGGACTTTATTATCATAAAATGCTCTGGCTTTCGGGGGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00039209TCONS_00039209Clytia hemisphaericatranscript
TCONS_00039210TCONS_00039210Clytia hemisphaericatranscript
TCONS_00039211TCONS_00039211Clytia hemisphaericatranscript
TCONS_00039212TCONS_00039212Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00039211-proteinTCONS_00039211-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002043supercontigsc0002043:23869..30109 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.62 0.89 0.46 0.48 2.15 1.38 2.79 3.02 1.88 2.13 1.53 1.73 0.86 1.68 1.93 2.19 3.18 2.12 1.45 1.07 1.31 0.98 0.87 0.77 0.66 0.61 0.47 0.52 0.41 0.39