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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039210 ID=TCONS_00039210|Name=TCONS_00039210|organism=Clytia hemisphaerica|type=transcript|length=2212bp
GGAGGGCCTATACGCCGGATATATCCGGCGTAGACTTTATCTTAGGATCG
GCGTATTGGCGTGAGCTCAATAATTTTAACCTTCCTTGGCGTATCAAATC
TGTGAATTTCGGCGTAGGAATCGATTTTTTGTCCAGTATATCTTCGCCGC
TCTTCTTCTCCTTTCAGATTGTTTACACTACCTTGTTCTTTTTAAAATCC
GTTTAAAGCTCTTCATCACGTGACTTTCTACACCTAGACTCCATTTCCAC
TACATTGTAATAAAATGTAAAACGGGCGTAAAAAAAAAACGCACCCTCTA
TTGAAAAACTCGATATCGGTACCAAAATAAACCTCACATTTTTTTCGGGG
AATCCAATATGGCGGATGCACGAGACAACGAATTAGAGataattgaagat
gaaaatgaagttgTAAATAGTGTAAATAATGGTGTAAAAAGTGTAAATtt
aatttgtaaagtttgtaatAATCCATGTGGCGTGGCTCACAGTTGCCTGA
GATGTGAACGGTACACTCACTTAATTTGTGGGGACCCACCAGCTGGggaa
gaacaagaagaaggataGGGTCAAAAGGTTATTTGTTTTTTATGCAGTGG
GAAAAGGAAGGACGAGGGCAATTCCTCTGAAACGTCCGCttcaaaaaaac
gaaaacacTCGCAAGAGGCGTGGAAGGCAAGGTTTAAAAGACCTAAAATC
GGAGAGACAAACACAAACACTGATAAGAAAACTGACtctcaaaacaattc
aaagaagaCAGCCATCGAGGAAAAATCATTTACGTGTAAAGAGTGCCTTG
AAGGGTTTTTTACCAAAAAGAATCCTGCAAAAGTAGGGTCAACTAGAATC
TGTAGAAATGATTCATCAAGTATACAACGACACAAATCCACATGGCATAA
ATTAACAGGCAAATGTACGATTGTCCCTACTAACTCAGTGGACATAGCTA
ATCTAAAGAAGAAATATGAACGAAAAAAGGACGATAGTGGTAGTGACAAT
GAAGCAACTGAAAGCCCAAACCAAGCCTCCGACCAAGCCTCTACTACTGC
TACTTCAGTTCATGAAAGTTCTATAGCCAAGAAACCTACACAAACCACAA
TGTTGAGTGTTGCATCAAATAATCTTGAAAAAGACTCTTCAACACCAAAG
GACGAAGATCTCatattaaaaaaactgaatGAGTTGACTTTAGAACTCAG
GGGTATGAAAACTCAACATGAAAGCATATGCAGTATTGCATTTAAAGATA
CAGAGAAAAGTGTCCTACTGGAGGCTTTACGAAAGTGTGAAAACCTAGTT
GACTTTCTGAAAgtttccaaaagttttgaatggTTTTGTGACGAAAAAAC
AGAAGAAGGGATTTTGAGGTGTAAAGCCTGTTTTCACATGTATCTTAAAA
ACAATCCTAGATCATCTAGTTTGAACCCAACACAAGTCCGTATGGTTACA
AAGGGAAATGAATTCTCCACAGGAATGTCATATGACAAATTGAAAACACG
GCAGTTACTACAAGGAGGTAATGACACCTGGAGACATTTAAAAAACCTCA
TGATCAATCATCTTTGCCTAATTGGAGAAGGATCAAACTTTCACTTCGAG
AAGATGAAAATACAAGACGAAATGTTTTTCGTGCAGCAATTTCGGCCATT
AAATTAGGGTCTGCTGCCACCCATTTTGAAACTTTGATATCGTTGTTGAA
GAGTTGGAAACATAGGGCATAGCAGGAAAAACTTTAATGACATCTTGCAT
TGTATCGAACAGGCTATGAATAAGCAAATTAACGACTGGCTAAGCACACC
CCTACCATCAACTGGTCTACCACCACATTTCTGGGGAACTGTTGATAAAG
CTACACCTTCAAGAGTCACAAACCAAGCCGTCATCATAGTTGCACGGGAT
CAAAATGGAAATTGTTGTCCTATCCCAGTAGCGGCGCCCGAAATCTACAG
AGAGCTTGATGCAGCAACCTATGATGAACTTGCAACCCAGATGGTTGATG
ctataaaagaaaactttccaTCCAGCTTGCTTTCAAGGATGTGTGGTGCA
GCAGCCGACGACCCTTACCAAACTAAAAACTTTCGCTCATCTTTGGTTGA
ACATGTTGGGacagattttgatgatattctTAGCTTCCCTGTAACATGGG
ACCCTGGACATTTGCTCAATCTAGCAGTTACTGATGTTAGAGACAATGAT
ACGATTGGAGGC Run BLAST on NCBI transcript from alignment at sc0002043:24017..27341+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039210 ID=TCONS_00039210|Name=TCONS_00039210|organism=Clytia hemisphaerica|type=transcript|length=3325bp|location=Sequence derived from alignment at sc0002043:24017..27341+ (Clytia hemisphaerica)
GGAGGGCCTATACGCCGGATATATCCGGCGTAGACTTTATCTTAGGATCG
GCGTATTGGCGTGAGCTCAATAATTTTAACCTTCCTTGGCGTATCAAATC
TGTGAATTTCGGCGTAGGAATCGATTTTTTGTCCAGTATATCTTCGCCGC
TCTTCTTCTCCTTTCAGATTGTTTACACTACCTTGTTCTTTTTAAAATCC
GTTTAAAGCTCTTCATCACGTGACTTTCTACACCTAGACTCCATTTCCAC
TACATTGTAATAAAATGTAAAACGGGCGTAAAAAAAAAACGCACCCTCTA
TTGAAAAACTCGATATCGGTACCAAAATAAACCTCACATTTTTTTCGGGG
AATCCAATATGGCGGATGCACGAGACAACGAATTAGAGataattgaagat
gaaaatgaagttgTAAATAGTGTAAATAATGGTGTAAAAAGTGTAAATtt
aatttgtaaagtttgtaatAATCCATGTGGCGTGGCTCACAGTTGCCTGA
GATGTGAACGGTACACTCACTTAATTTGTGGGGACCCACCAGCTGGggaa
gaacaagaagaaggataGGGTCAAAAGGTTATTTGTTTTTTATGCAGTGG
GAAAAGGAAGGACGAGGGTAAGTcggtttgaaaatttcaaattaagttAG
GAGTAGACACAGAATTATGAATTCTATGGACGATATTATCGTTAAATCGT
AACTTTATCTCTGACGAATAAAAAGTGTGGATTTGTGCTTTGGTGGGCTT
TACAAACTGGGTCCTTTTCAGGATAGATTTACTTGTCTTGATAGCTTAGT
GCAGAAGAGCTGGTAGTCTCTATCGAGATGCTCGTTAAAATTGCACACAT
TCATTGAATCCGCTACCAATTCAGTGAAGAGCTATTGAGGCGTAATCTAT
AATCAGTCTTTGGGCCAcactttttatgtatttttaaatacataTTTCTC
ATAAAGCTTAAATCTGGCAAATTTCTGCACTTACATgcttttcaattaaa
aatgtattttcaataatttggGTTGGGGCCCCATATTACACACATCAATA
ATAAGCTACGAGAATATTTTTTTGGCTTATCACTTTGCTACTTACTACAG
TACACagtaacttttttaataaaataaaaaaaagaagacaataataaaaa
taagactCTGACAACGCACGTGGTACTTTTCATGTTTGAAAGATCAAATG
GATCAAATTAAatgaacatttttttcttttacatagTGAAATGTAAAAGG
TTTTCCTCTCTTTCTATTATTTGGTTTATTGGAGAGgcgttcttcattat
tttaAGAGTACATACACGAAATACAAATATAAATAATAAGTTGCGATTAT
TTTAGCTTTACTATCGCAGTTGATTATTGATAGGTGTAACGGGGATTTTA
ATAAGAAAGATAAAAATGTCACAGATAAACTCATGTGTAACCTCGCTAAT
GTGTACTCTCTCGCTCATGTTTGTAGGCAATTCCTCTGAAACGTCCGCtt
caaaaaaacgaaaacacTCGCAAGAGGCGTGGAAGGCAAGGTTTAAAAGA
CCTAAAATCGGAGAGACAAACACAAACACTGATAAGAAAACTGACtctca
aaacaattcaaagaagaCAGCCATCGAGGAAAAATCATTTACGTGTAAAG
AGTGCCTTGAAGGGTTTTTTACCAAAAAGAATCCTGCAAAAGTAGGGTCA
ACTAGAATCTGTAGAAATGATTCATCAAGTATACAACGACACAAATCCAC
ATGGCATAAATTAACAGGCAAATGTACGATTGTCCCTACTAACTCAGTGG
ACATAGCTAATCTAAAGAAGAAATATGAACGAAAAAAGGACGATAGTGGT
AGTGACAATGAAGCAACTGAAAGCCCAAACCAAGCCTCCGACCAAGCCTC
TACTACTGCTACTTCAGTTCATGAAAGTTCTATAGCCAAGAAACCTACAC
AAACCACAATGTTGAGTGTTGCATCAAATAATCTTGAAAAAGACTCTTCA
ACACCAAAGGACGAAGATCTCatattaaaaaaactgaatGAGTTGACTTT
AGAACTCAGGGGTATGAAAACTCAACATGAAAGCATATGCAGTATTGCAT
TTAAAGATACAGAGAAAAGTGTCCTACTGGAGGCTTTACGAAAGTGTGAA
AACCTAGTTGACTTTCTGAAAgtttccaaaagttttgaatggTTTTGTGA
CGAAAAAACAGAAGAAGGGATTTTGAGGTGTAAAGCCTGTTTTCACATGT
ATCTTAAAAACAATCCTAGATCATCTAGTTTGAACCCAACACAAGTCCGT
ATGGTTACAAAGGGAAATGAATTCTCCACAGGAATGTCATATGACAAATT
GAAAACACGGCAGTTACTACAAGGAGGTAATGACACCTGGAGACATTTAA
AAAACCTCATGATCAATCATCTTTGCCTAATTGGAGAAGGATCAAACTTT
CACTTCGAGAAGATGAAAATACAAGACGAAATGTTTTTCGTGCAGCAATT
TCGGCCATTAAATTAGGGTCTGCTGCCACCCATTTTGAAACTTTGATATC
GTTGTTGAAGAGTTGGAAACATAGGGCATAGCAGGAAAAACTTTAATGAC
ATCTTGCATTGTATCGAACAGGCTATGAATAAGCAAATTAACGACTGGCT
AAGCACACCCCTACCATCAACTGGTCTACCACCACATTTCTGGGGAACTG
TTGATAAAGCTACACCTTCAAGAGTCACAAACCAAGCCGTCATCATAGTT
GCACGGGATCAAAATGGAAATTGTTGTCCTATCCCAGTAGCGGCGCCCGA
AATCTACAGAGAGCTTGATGCAGCAACCTATGATGAACTTGCAACCCAGA
TGGTTGATGctataaaagaaaactttccaTCCAGCTTGCTTTCAAGGTAT
CCCAGGACAATACAATGATAAATTGTATTTTCCTGGCATATGGTGATTTA
AAAGTAGCTTCTGAAAACTTCTGATATGTTAATCTTCCCCAATATTAAGA
CATTGTAACTGCCTTGTCATCACTTCTGCTAACGCAATCAGTAGTAAGAA
ATCACTATCCGAAAATTTAATTGATCTAAAATTAGAACTGATTGTGGACT
TATAGACAGTCGATCTCCTTCAGTGtattgttttttcttatttgtgTCAG
GATGTGTGGTGCAGCAGCCGACGACCCTTACCAAACTAAAAACTTTCGCT
CATCTTTGGTTGAACATGTTGGGacagattttgatgatattctTAGCTTC
CCTGTAACATGGGACCCTGGACATTTGCTCAATCTAGCAGTTACTGATGT
TAGAGACAATGATACGATTGGAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039210-exon-sc0002043-1491911889:24017..24633 | TCONS_00039210-exon-sc0002043-1491911889:24017..24633 | Clytia hemisphaerica | exon |
| TCONS_00039210-exon-sc0002043-1510915933:24017..24633 | TCONS_00039210-exon-sc0002043-1510915933:24017..24633 | Clytia hemisphaerica | exon |
| TCONS_00039210-exon-sc0002043-1575043694:24017..24633 | TCONS_00039210-exon-sc0002043-1575043694:24017..24633 | Clytia hemisphaerica | exon |
| TCONS_00039210-exon-sc0002043-1491911889:25493..26912 | TCONS_00039210-exon-sc0002043-1491911889:25493..26912 | Clytia hemisphaerica | exon |
| TCONS_00039210-exon-sc0002043-1510915933:25493..26912 | TCONS_00039210-exon-sc0002043-1510915933:25493..26912 | Clytia hemisphaerica | exon |
| TCONS_00039210-exon-sc0002043-1575043694:25493..26912 | TCONS_00039210-exon-sc0002043-1575043694:25493..26912 | Clytia hemisphaerica | exon |
| TCONS_00039210-exon-sc0002043-1491911889:27167..27341 | TCONS_00039210-exon-sc0002043-1491911889:27167..27341 | Clytia hemisphaerica | exon |
| TCONS_00039210-exon-sc0002043-1510915933:27167..27341 | TCONS_00039210-exon-sc0002043-1510915933:27167..27341 | Clytia hemisphaerica | exon |
| TCONS_00039210-exon-sc0002043-1575043694:27167..27341 | TCONS_00039210-exon-sc0002043-1575043694:27167..27341 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002043 | supercontig | sc0002043:24017..27341 + |
Blast
The following BLAST results are available for this feature:
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