XLOC_023381 (gene) - C. hemisphaerica

Overview
NameXLOC_023381
Unique NameXLOC_023381
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0001963:13742..19133+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_023381 ID=XLOC_023381|Name=XLOC_023381|organism=Clytia hemisphaerica|type=gene|length=5392bp|location=Sequence derived from alignment at sc0001963:13742..19133+ (Clytia hemisphaerica)
ACCCAGTTTTTGAGATTGTTTTCTTACGGTTGCGAAGCACGTGCATAATT
CTTTTACAACGCGCACTAGATCAAGAACAGTCATACatagaaaataattt
tcgatATAAAGATATTTAAAATGGAACCTGGATTGGAAGACTTTACTAAA
GACGAACTGGCAACCTTCCTACGAAGAACATTTCCAGCTGATCTTGCTGA
TAAAATTATAAGTATGTCGTGATAATTTTTAacctgaaaaatctttttgt
tctcttttattttgatgAATTGTTGAAGTGCTTAAGAAGTTCTTTTCCTC
TGAAAATTATGTGGTTGTCCAGAAGGTccctaaattttttttggctcaTT
CTTTCAACCACCTCTTATTATTCAAACTCTGCAGGCTTCTCACAGATTGT
ATCTAAGCCAGGTAGAGGCTAGTCATTACTTTGTTGAATCATAGAtaata
ccgtaacttggtcttcTGATGTCGACATCTATCTCTCTTCTAATCCTGAC
ACCACTTCTTTGGAAATAGGAATAGTAGAAAAGTCGGAATTGCTCATGGA
AACTATATTTCATTAGGGggcaatcaaaaatatcttcatttaATGTCACC
GCGGtgtgggtctaaaaagtgagttagtcggtcgtaaaaatttttGCGTT
TTCTTAcctccatcatccatttttggagtgtattctcaagggaaactgcc
agccagccaacCGCGTGTTAtgggtgatttcaaattatgacctttgaaca
ctgtgacctcaGACCCAAAATAACGCATGTAATAATaaataaagtcaaaa
tgctgcgaatgcgctagaaaatcgctcgcaaaaaattggtaataataaat
ttttgaacaaaggaaacatcattgacagaaaaagttaGACGAATTTACca
actcaattttcgagaatcGGTCGGATGACATGAAacaagatatttgtgat
tgctgcCTTACTTAGAGACCAGagaggaaaaaattttttgtctatTAGTG
ATTCTGACTTTACTATTATTTCTATCTCTAAAACTGAGTGTTGGAATTAG
AAGAGGAATGTTGACATAagaccaacttatggtactAGACTATCCCACTT
GATATGTAATTAGTTTAATCATTTTGCAATCAATGACTGGATATTGNCTA
TCCCACTTGATATGTATATAATTAGTTTAATCTTTTTGCAATAAATGACT
GGATATTGATAGAGATAAACATAATGGATAGGTAATCAAGACTATTCTAA
TATCTTAAGTATCGATTGATCACTGTTAGTCTTTTCATCGCTTAGCTATA
AATTGTGATCAATCAATCATCTTAGAGTCAATTGAATAATCAATCAATTT
GGTAGGCAATCAAGCCTCTCACTTGATTATTGATTGTCAATCGATTACCA
GAATCAATTGATATCATTTATCAAGTGGGAGAGTCtgagtatgcttataa
aaaaatgtatatattTCGTTACCAGGTCACGAATTGGATGGAAAGCTATT
TGGAACGCTAATCAGAACGCCAGACCAATACTTTCTGCTGTCATCTATGG
AGTTTACAATAAAGGAGGTCCTACAATTTCAGACAGTCTATCCAATAACA
AAAAATCACAATGACACTCCCACCAGAAAATCTATAAAGGCATCAACACC
AATGACAAATAGACTTCTGAAACGACAGAAAAACCTTCAGTAAGTCTCTC
CTATTTACAATGTATTTGATTTGGCAGCAGTTTGCCAAGCAATAGCTTCT
CCTTTTATTTGCATCTCTGAAGTAGTTGACAAAATCAGACATGGTATGTC
ATCCACTCAATCATGATATTGTTTCTGCAAGGCTTTCATATAACTCCTTT
TACTTGGAATATGAGTTGCTATTAGTTTGGAAATATTAAAGTTCACACTA
ACTAGAGAGTTTCATTAAACAAAAGATTGAGTAAGTTTATCTATGTCAAA
TTTTGTGGCTGTAGAATGGCAACTTTTCATTTTAACAAAACCAACTAATA
TTTTGCTAGGAgttaattcaaattttctaggaCATGTATTTTTATTCCTC
ACACCAGGCAAAAGCAACTACGTGCTGAGGTCAAACGGAAATGGTCTGAT
GATAGACTGCCAGCATCATTTGCNACGTGCTGAGGTCAAACGAAAATGGT
CTGATGATAGACTGCCAGCATCATTTGCagataaagaaaacaaagaagaa
cTTGATGCTTTTGTTGATTGGTTGCATGGTGAATCAACAACATCTTTGAG
GATGCTTGAACACATGGGAAAGAACAAGATCAGAAGTTCCATCCTGACCA
TTGTTCatgaaagaagaagaaacatAAAAGAAATGAGAAAATCAGGATCA
CAGGTAAAGAatcttttgaaactttttcaattattatatttttgagTCAG
TTTTTATTAGCACTTGTAACCCTTTCGTAGCAAATTCTCAAACTTCCTTA
GTATGAATTCCCATTTCACAACATTTATTAGTATAAAATTCCAAATCCCT
AAAATTGAATTCAATGTTCTTTTTATTAAACTTAATAGAATCAAGTAGCA
GCTGAACAAGTGCGCAGGCAGTTGGATATGAATGAGGATGAgagagaaaa
tcaaaaagataaATTACCTCAAGCTACCTGTGCAAATAAACGAAAGGTAA
TAGAAGTGTTTggttaattttttgttcatcttCTAAATCCTCTCCCTTGA
TCTACTAATTGTAGGGAGGGGCTTTTTGAGAAGGTAAAATGGCTAATACA
GATAATTGTGGTAATTATAATTTCTGTTTTCAAAAGTTGGTTGGGAGTGG
GatgtcaaataaaaagaatgaaattttgaaattgaaaaacttgTTCTGTT
AACTTTTGTTTAGACCTGCAGTCCACACGTGTCACCTGTCAAAAGAAAGT
GCAGTCAAAGAAAGCTCACtccaaaaaagccaaaaaaggtACAGTAAGCA
GGAATAGGCTTTGTCAAGAATATATACATATCATTATTAATAGTTTGACT
GTGATGactatttattttgaatatgcTGCAAAAGTGCTTTGTGGTTTGGC
TCTCAATTTGATAAGGGAGTGCTGACAGATCTTATTATGGAAGTACACTT
TTCAACTTAACTTAAAGATGATcagttaaaatattatttttgattttatc
agaCATTGGCCATTTTCAACCCACAAATAGTGAAAACAATTCGACACAAA
TTTCAATCAGAAAGCCAAAATCAGGTAAATATTAGGATTTTCCTtttgca
cccccccccccccccNTAACGCCCTCAACTGACATAAAGCCTTATTCTAA
CGCCCATCATACATTACATTGCAGAGTAACCCCTTATTTACCTGTTGTAG
TGGAAAATAAATTCATACCAATAATTGCCATGTTCCTCCGAAAAAAAATC
CCCTAGCAGAAAGGGGAGGAGGAAACCATGAGAATGTAGGGAAATTAGGG
TGAAGTACTGTAATGTCACTGAATTTTTGTTTACTGCTAAAGCTTAAGTC
AAGTGTACCAGAATTACCCATATTTGTCTAAAATATTTTAAcatgtttaa
aaaatgttttattgtgTGAGTAATTCccatttgcaatttttctataATAC
TTCAAGTTATTTCCTGATAAACTCATTTCTTTCATTCAGATATTGGATAC
CGTATCAGTTTCCCAGACAAGTCCAGTGTTGTTCCCCGAGGTAAATGATA
TCAAAAATTACTTGTTTCCTTGAGAAAACGTTTTGCTTTTTTGAGCTCGT
CTGAAATATTCAGTTGccaaacaattttttcttcaacagcaccaaaaaaa
attttttcgaccTTGTATACCTTATGAAACAATTGGGTGTatcttttgcc
aaaaaacttaCTGAGTAAAAACCTGGTGATTATTTGTCGACTGGTTTTCG
ACAGTTTAATTGAATAAAACTAAATGCAAGCCTCAATTTTTACTAGTTTC
TTGTTTTTACAAAttccaactttttttaggttagAGAAGAGATTGACGAT
GATCCAACAAAGTCCCTTTCGGATGTTAGTGTGGCATCGAACAAGGTACA
AACTTTCTTTCTTAATTGTTAATTAGGACAAAATTGGCTTTTGGTTAACA
TTTAATCAATCGATTTAGTTTATTGATGACATTTAGTTAATTGATTTACT
TGATTTGAATTTTCGTCAAATGTTCATTGTATTTCTTGTTTTAGAGTACC
TGTTATTCACCAAGTTCGCCAGAGTACTCTCTTCAGCATGAAACTCAAGA
TACCCAGGCTGTGTCACGCGTGCATGCGTCGGCAAATGAAGTTGTCAGGC
AATTCAAGCTTGATGGTGAGCTcttttaaatagtttttaaCCCATCACAG
TACACTAGAAGCTCTTTCGCATTCGAAAGATAGCTAAATGGGGATGATGA
AAGAGTTTGAAGTTTGAGCTTTTCATTGACTTCTTTTTCCTTTCCATCTT
GGTATAAAGTGTCtaaatataacttttgatagaatctgATTTAGATACCA
CGTTTGTGCCCGTTGAAAACGTAATTCAGGACTGGAATATTTTctagaat
aaaataaattaatgaagacgaaaaacaaagatcaacttGACATTTAATTT
GTTTTCTACAGATATTTCGAGACATGAACATTTGATTCTGGCTCGTCTAA
CCCTTGGAAAGTTTAATCGTGACAAAATAAAGGAGAAATGCGAGAAATAT
GATATACCCGTCCCGGCCCGAGAGAAAAAGGTTACAGACGAGTGTGTGGA
ATTTGCCAAAGGAATGTTGAGAGCAAAGAAATTGACCATCTTGAACAGAC
CAGTGGAAACGGTAGATGATATCTTCATACCCGTCTACGAGTAAGTTTGA
CTAAATAATTGATACTCACTCGGAAATGGTTATGAAGATATCGTCTTACC
TCAATGAACTCTTTTCTCGTTTTTccgtcaaaaaaaagaaacttgtCGAT
ACTAGGTTTTGAACTCGTTTCGGGTTATTTGACTAAAacataattcaaat
tcaaattctgcttcattttaaattgagaaacaaaatttttgaccgcgaaa
attagttttagtAAGGTACAAGGTGAATGTTTTTAAACGATAGTTGTATT
TCATAACGTtattaatattttatttattttttttctttaaaatttcttaa
cgatatttttatcttttttattttgttatgtatttttcttttaaaaaaaa
cgaTATTTGTAAATTTCTTAACGTTAttcatattttctttattttatatt
tttctttaaaaaaaaacgatatTTGTAAATTTCTTAACGTTATAGTAGAG
ggaattttgtaaaatcgctcgactgttttgttagaagcacttgttataca
tttttggaaagctaaggggtaggggaatcgaaattactatgt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00038908TCONS_00038908Clytia hemisphaericatranscript
TCONS_00038909TCONS_00038909Clytia hemisphaericatranscript
TCONS_00038910TCONS_00038910Clytia hemisphaericatranscript
TCONS_00038911TCONS_00038911Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00038910-proteinTCONS_00038910-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001963supercontigsc0001963:13742..19133 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.31	2.48	0.93	0.97	52.04	38.67	7.78	8.35	3.19	8.53	5.05	5.99	1.72	2.27	1.75	2.19	3.24	1.24	1.33	1.26	2.31	2.33	1.67	1.8	12.83	11.04	2.16	1.46	0.84	0.57