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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038911 ID=TCONS_00038911|Name=TCONS_00038911|organism=Clytia hemisphaerica|type=transcript|length=1949bp
GGGAAATTAGGGTGAAGTACTGTAATGTCACTGAATTTTTGTTTACTGCT
AAAGCTTAAGTCAAGTGTACCAGAATTACCCATATTTGTCTAAAATATTT
TAAcatgtttaaaaaatgttttattgtgTGAGTAATTCccatttgcaatt
tttctataATACTTCAAGTTATTTCCTGATAAACTCATTTCTTTCATTCA
GATATTGGATACCGTATCAGTTTCCCAGACAAGTCCAGTGTTGTTCCCCG
AGGTAAATGATATCAAAAATTACTTGTTTCCTTGAGAAAACGTTTTGCTT
TTTTGAGCTCGTCTGAAATATTCAGTTGccaaacaattttttcttcaaca
gcaccaaaaaaaattttttcgaccTTGTATACCTTATGAAACAATTGGGT
GTatcttttgccaaaaaacttaCTGAGTAAAAACCTGGTGATTATTTGTC
GACTGGTTTTCGACAGTTTAATTGAATAAAACTAAATGCAAGCCTCAATT
TTTACTAGTTTCTTGTTTTTACAAAttccaactttttttaggttagAGAA
GAGATTGACGATGATCCAACAAAGTCCCTTTCGGATGTTAGTGTGGCATC
GAACAAGGTACAAACTTTCTTTCTTAATTGTTAATTAGGACAAAATTGGC
TTTTGGTTAACATTTAATCAATCGATTTAGTTTATTGATGACATTTAGTT
AATTGATTTACTTGATTTGAATTTTCGTCAAATGTTCATTGTATTTCTTG
TTTTAGAGTACCTGTTATTCACCAAGTTCGCCAGAGTACTCTCTTCAGCA
TGAAACTCAAGATACCCAGGCTGTGTCACGCGTGCATGCGTCGGCAAATG
AAGTTGTCAGGCAATTCAAGCTTGATGGTGAGCTcttttaaatagttttt
aaCCCATCACAGTACACTAGAAGCTCTTTCGCATTCGAAAGATAGCTAAA
TGGGGATGATGAAAGAGTTTGAAGTTTGAGCTTTTCATTGACTTCTTTTT
CCTTTCCATCTTGGTATAAAGTGTCtaaatataacttttgatagaatctg
ATTTAGATACCACGTTTGTGCCCGTTGAAAACGTAATTCAGGACTGGAAT
ATTTTctagaataaaataaattaatgaagacgaaaaacaaagatcaactt
GACATTTAATTTGTTTTCTACAGATATTTCGAGACATGAACATTTGATTC
TGGCTCGTCTAACCCTTGGAAAGTTTAATCGTGACAAAATAAAGGAGAAA
TGCGAGAAATATGATATACCCGTCCCGGCCCGAGAGAAAAAGGTTACAGA
CGAGTGTGTGGAATTTGCCAAAGGAATGTTGAGAGCAAAGAAATTGACCA
TCTTGAACAGACCAGTGGAAACGGTAGATGATATCTTCATACCCGTCTAC
GAGTAAGTTTGACTAAATAATTGATACTCACTCGGAAATGGTTATGAAGA
TATCGTCTTACCTCAATGAACTCTTTTCTCGTTTTTccgtcaaaaaaaag
aaacttgtCGATACTAGGTTTTGAACTCGTTTCGGGTTATTTGACTAAAa
cataattcaaattcaaattctgcttcattttaaattgagaaacaaaattt
ttgaccgcgaaaattagttttagtAAGGTACAAGGTGAATGTTTTTAAAC
GATAGTTGTATTTCATAACGTtattaatattttatttattttttttcttt
aaaatttcttaacgatatttttatcttttttattttgttatgtatttttc
ttttaaaaaaaacgaTATTTGTAAATTTCTTAACGTTAttcatattttct
ttattttatatttttctttaaaaaaaaacgatatTTGTAAATTTCTTAAC
GTTATAGTAGAGggaattttgtaaaatcgctcgactgttttgttagaagc
acttgttatacatttttggaaagctaaggggtaggggaatcgaaattac Run BLAST on NCBI transcript from alignment at sc0001963:17180..19128+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038911 ID=TCONS_00038911|Name=TCONS_00038911|organism=Clytia hemisphaerica|type=transcript|length=1949bp|location=Sequence derived from alignment at sc0001963:17180..19128+ (Clytia hemisphaerica)
GGGAAATTAGGGTGAAGTACTGTAATGTCACTGAATTTTTGTTTACTGCT
AAAGCTTAAGTCAAGTGTACCAGAATTACCCATATTTGTCTAAAATATTT
TAAcatgtttaaaaaatgttttattgtgTGAGTAATTCccatttgcaatt
tttctataATACTTCAAGTTATTTCCTGATAAACTCATTTCTTTCATTCA
GATATTGGATACCGTATCAGTTTCCCAGACAAGTCCAGTGTTGTTCCCCG
AGGTAAATGATATCAAAAATTACTTGTTTCCTTGAGAAAACGTTTTGCTT
TTTTGAGCTCGTCTGAAATATTCAGTTGccaaacaattttttcttcaaca
gcaccaaaaaaaattttttcgaccTTGTATACCTTATGAAACAATTGGGT
GTatcttttgccaaaaaacttaCTGAGTAAAAACCTGGTGATTATTTGTC
GACTGGTTTTCGACAGTTTAATTGAATAAAACTAAATGCAAGCCTCAATT
TTTACTAGTTTCTTGTTTTTACAAAttccaactttttttaggttagAGAA
GAGATTGACGATGATCCAACAAAGTCCCTTTCGGATGTTAGTGTGGCATC
GAACAAGGTACAAACTTTCTTTCTTAATTGTTAATTAGGACAAAATTGGC
TTTTGGTTAACATTTAATCAATCGATTTAGTTTATTGATGACATTTAGTT
AATTGATTTACTTGATTTGAATTTTCGTCAAATGTTCATTGTATTTCTTG
TTTTAGAGTACCTGTTATTCACCAAGTTCGCCAGAGTACTCTCTTCAGCA
TGAAACTCAAGATACCCAGGCTGTGTCACGCGTGCATGCGTCGGCAAATG
AAGTTGTCAGGCAATTCAAGCTTGATGGTGAGCTcttttaaatagttttt
aaCCCATCACAGTACACTAGAAGCTCTTTCGCATTCGAAAGATAGCTAAA
TGGGGATGATGAAAGAGTTTGAAGTTTGAGCTTTTCATTGACTTCTTTTT
CCTTTCCATCTTGGTATAAAGTGTCtaaatataacttttgatagaatctg
ATTTAGATACCACGTTTGTGCCCGTTGAAAACGTAATTCAGGACTGGAAT
ATTTTctagaataaaataaattaatgaagacgaaaaacaaagatcaactt
GACATTTAATTTGTTTTCTACAGATATTTCGAGACATGAACATTTGATTC
TGGCTCGTCTAACCCTTGGAAAGTTTAATCGTGACAAAATAAAGGAGAAA
TGCGAGAAATATGATATACCCGTCCCGGCCCGAGAGAAAAAGGTTACAGA
CGAGTGTGTGGAATTTGCCAAAGGAATGTTGAGAGCAAAGAAATTGACCA
TCTTGAACAGACCAGTGGAAACGGTAGATGATATCTTCATACCCGTCTAC
GAGTAAGTTTGACTAAATAATTGATACTCACTCGGAAATGGTTATGAAGA
TATCGTCTTACCTCAATGAACTCTTTTCTCGTTTTTccgtcaaaaaaaag
aaacttgtCGATACTAGGTTTTGAACTCGTTTCGGGTTATTTGACTAAAa
cataattcaaattcaaattctgcttcattttaaattgagaaacaaaattt
ttgaccgcgaaaattagttttagtAAGGTACAAGGTGAATGTTTTTAAAC
GATAGTTGTATTTCATAACGTtattaatattttatttattttttttcttt
aaaatttcttaacgatatttttatcttttttattttgttatgtatttttc
ttttaaaaaaaacgaTATTTGTAAATTTCTTAACGTTAttcatattttct
ttattttatatttttctttaaaaaaaaacgatatTTGTAAATTTCTTAAC
GTTATAGTAGAGggaattttgtaaaatcgctcgactgttttgttagaagc
acttgttatacatttttggaaagctaaggggtaggggaatcgaaattac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038911-exon-sc0001963-1491911889:17180..19128 | TCONS_00038911-exon-sc0001963-1491911889:17180..19128 | Clytia hemisphaerica | exon |
| TCONS_00038911-exon-sc0001963-1510915933:17180..19128 | TCONS_00038911-exon-sc0001963-1510915933:17180..19128 | Clytia hemisphaerica | exon |
| TCONS_00038911-exon-sc0001963-1575043694:17180..19128 | TCONS_00038911-exon-sc0001963-1575043694:17180..19128 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001963 | supercontig | sc0001963:17180..19128 + |
Blast
The following BLAST results are available for this feature:
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