TCONS_00038909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038909
Unique NameTCONS_00038909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2154

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038909 ID=TCONS_00038909|Name=TCONS_00038909|organism=Clytia hemisphaerica|type=transcript|length=2154bp
ACCCAGTTTTTGAGATTGTTTTCTTACGGTTGCGAAGCACGTGCATAATT
CTTTTACAACGCGCACTAGATCAAGAACAGTCATACatagaaaataattt
tcgatATAAAGATATTTAAAATGGAACCTGGATTGGAAGACTTTACTAAA
GACGAACTGGCAACCTTCCTACGAAGAACATTTCCAGCTGATCTTGCTGA
TAAAATTATAAGTCACGAATTGGATGGAAAGCTATTTGGAACGCTAATCA
GAACGCCAGACCAATACTTTCTGCTGTCATCTATGGAGTTTACAATAAAG
GAGGTCCTACAATTTCAGACAGTCTATCCAATAACAAAAAATCACAATGA
CACTCCCACCAGAAAATCTATAAAGGCATCAACACCAATGACAAATAGAC
TTCTGAAACGACAGAAAAACCTTCAGCAAAAGCAACTACGTGCTGAGGTC
AAACGAAAATGGTCTGATGATAGACTGCCAGCATCATTTGCagataaaga
aaacaaagaagaacTTGATGCTTTTGTTGATTGGTTGCATGGTGAATCAA
CAACATCTTTGAGGATGCTTGAACACATGGGAAAGAACAAGATCAGAAGT
TCCATCCTGACCATTGTTCatgaaagaagaagaaacatAAAAGAAATGAG
AAAATCAGGATCACAGAATCAAGTAGCAGCTGAACAAGTGCGCAGGCAGT
TGGATATGAATGAGGATGAgagagaaaatcaaaaagataaATTACCTCAA
GCTACCTGTGCAAATAAACGAAAGACCTGCAGTCCACACGTGTCACCTGT
CAAAAGAAAGTGCAGTCAAAGAAAGCTCACtccaaaaaagccaaaaaagg
tACAGTAAGCAGGAATAGGCTTTGTCAAGAATATATACATATCATTATTA
ATAGTTTGACTGTGATGactatttattttgaatatgcTGCAAAAGTGCTT
TGTGGTTTGGCTCTCAATTTGATAAGGGAGTGCTGACAGATCTTATTATG
GAAGTACACTTTTCAACTTAACTTAAAGATGATcagttaaaatattattt
ttgattttatcagaCATTGGCCATTTTCAACCCACAAATAGTGAAAACAA
TTCGACACAAATTTCAATCAGAAAGCCAAAATCAGATATTGGATACCGTA
TCAGTTTCCCAGACAAGTCCAGTGTTGTTCCCCGAGgttagAGAAGAGAT
TGACGATGATCCAACAAAGTCCCTTTCGGATGTTAGTGTGGCATCGAACA
AGAGTACCTGTTATTCACCAAGTTCGCCAGAGTACTCTCTTCAGCATGAA
ACTCAAGATACCCAGGCTGTGTCACGCGTGCATGCGTCGGCAAATGAAGT
TGTCAGGCAATTCAAGCTTGATGATATTTCGAGACATGAACATTTGATTC
TGGCTCGTCTAACCCTTGGAAAGTTTAATCGTGACAAAATAAAGGAGAAA
TGCGAGAAATATGATATACCCGTCCCGGCCCGAGAGAAAAAGGTTACAGA
CGAGTGTGTGGAATTTGCCAAAGGAATGTTGAGAGCAAAGAAATTGACCA
TCTTGAACAGACCAGTGGAAACGGTAGATGATATCTTCATACCCGTCTAC
GAGTAAGTTTGACTAAATAATTGATACTCACTCGGAAATGGTTATGAAGA
TATCGTCTTACCTCAATGAACTCTTTTCTCGTTTTTccgtcaaaaaaaag
aaacttgtCGATACTAGGTTTTGAACTCGTTTCGGGTTATTTGACTAAAa
cataattcaaattcaaattctgcttcattttaaattgagaaacaaaattt
ttgaccgcgaaaattagttttagtAAGGTACAAGGTGAATGTTTTTAAAC
GATAGTTGTATTTCATAACGTtattaatattttatttattttttttcttt
aaaatttcttaacgatatttttatcttttttattttgttatgtatttttc
ttttaaaaaaaacgaTATTTGTAAATTTCTTAACGTTAttcatattttct
ttattttatatttttctttaaaaaaaaacgatatTTGTAAATTTCTTAAC
GTTATAGTAGAGggaattttgtaaaatcgctcgactgttttgttagaagc
acttgttatacatttttggaaagctaaggggtaggggaatcgaaattact
atgt
Run BLAST on NCBI

transcript from alignment at sc0001963:13742..19133+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038909 ID=TCONS_00038909|Name=TCONS_00038909|organism=Clytia hemisphaerica|type=transcript|length=5392bp|location=Sequence derived from alignment at sc0001963:13742..19133+ (Clytia hemisphaerica)
ACCCAGTTTTTGAGATTGTTTTCTTACGGTTGCGAAGCACGTGCATAATT
CTTTTACAACGCGCACTAGATCAAGAACAGTCATACatagaaaataattt
tcgatATAAAGATATTTAAAATGGAACCTGGATTGGAAGACTTTACTAAA
GACGAACTGGCAACCTTCCTACGAAGAACATTTCCAGCTGATCTTGCTGA
TAAAATTATAAGTATGTCGTGATAATTTTTAacctgaaaaatctttttgt
tctcttttattttgatgAATTGTTGAAGTGCTTAAGAAGTTCTTTTCCTC
TGAAAATTATGTGGTTGTCCAGAAGGTccctaaattttttttggctcaTT
CTTTCAACCACCTCTTATTATTCAAACTCTGCAGGCTTCTCACAGATTGT
ATCTAAGCCAGGTAGAGGCTAGTCATTACTTTGTTGAATCATAGAtaata
ccgtaacttggtcttcTGATGTCGACATCTATCTCTCTTCTAATCCTGAC
ACCACTTCTTTGGAAATAGGAATAGTAGAAAAGTCGGAATTGCTCATGGA
AACTATATTTCATTAGGGggcaatcaaaaatatcttcatttaATGTCACC
GCGGtgtgggtctaaaaagtgagttagtcggtcgtaaaaatttttGCGTT
TTCTTAcctccatcatccatttttggagtgtattctcaagggaaactgcc
agccagccaacCGCGTGTTAtgggtgatttcaaattatgacctttgaaca
ctgtgacctcaGACCCAAAATAACGCATGTAATAATaaataaagtcaaaa
tgctgcgaatgcgctagaaaatcgctcgcaaaaaattggtaataataaat
ttttgaacaaaggaaacatcattgacagaaaaagttaGACGAATTTACca
actcaattttcgagaatcGGTCGGATGACATGAAacaagatatttgtgat
tgctgcCTTACTTAGAGACCAGagaggaaaaaattttttgtctatTAGTG
ATTCTGACTTTACTATTATTTCTATCTCTAAAACTGAGTGTTGGAATTAG
AAGAGGAATGTTGACATAagaccaacttatggtactAGACTATCCCACTT
GATATGTAATTAGTTTAATCATTTTGCAATCAATGACTGGATATTGNCTA
TCCCACTTGATATGTATATAATTAGTTTAATCTTTTTGCAATAAATGACT
GGATATTGATAGAGATAAACATAATGGATAGGTAATCAAGACTATTCTAA
TATCTTAAGTATCGATTGATCACTGTTAGTCTTTTCATCGCTTAGCTATA
AATTGTGATCAATCAATCATCTTAGAGTCAATTGAATAATCAATCAATTT
GGTAGGCAATCAAGCCTCTCACTTGATTATTGATTGTCAATCGATTACCA
GAATCAATTGATATCATTTATCAAGTGGGAGAGTCtgagtatgcttataa
aaaaatgtatatattTCGTTACCAGGTCACGAATTGGATGGAAAGCTATT
TGGAACGCTAATCAGAACGCCAGACCAATACTTTCTGCTGTCATCTATGG
AGTTTACAATAAAGGAGGTCCTACAATTTCAGACAGTCTATCCAATAACA
AAAAATCACAATGACACTCCCACCAGAAAATCTATAAAGGCATCAACACC
AATGACAAATAGACTTCTGAAACGACAGAAAAACCTTCAGTAAGTCTCTC
CTATTTACAATGTATTTGATTTGGCAGCAGTTTGCCAAGCAATAGCTTCT
CCTTTTATTTGCATCTCTGAAGTAGTTGACAAAATCAGACATGGTATGTC
ATCCACTCAATCATGATATTGTTTCTGCAAGGCTTTCATATAACTCCTTT
TACTTGGAATATGAGTTGCTATTAGTTTGGAAATATTAAAGTTCACACTA
ACTAGAGAGTTTCATTAAACAAAAGATTGAGTAAGTTTATCTATGTCAAA
TTTTGTGGCTGTAGAATGGCAACTTTTCATTTTAACAAAACCAACTAATA
TTTTGCTAGGAgttaattcaaattttctaggaCATGTATTTTTATTCCTC
ACACCAGGCAAAAGCAACTACGTGCTGAGGTCAAACGGAAATGGTCTGAT
GATAGACTGCCAGCATCATTTGCNACGTGCTGAGGTCAAACGAAAATGGT
CTGATGATAGACTGCCAGCATCATTTGCagataaagaaaacaaagaagaa
cTTGATGCTTTTGTTGATTGGTTGCATGGTGAATCAACAACATCTTTGAG
GATGCTTGAACACATGGGAAAGAACAAGATCAGAAGTTCCATCCTGACCA
TTGTTCatgaaagaagaagaaacatAAAAGAAATGAGAAAATCAGGATCA
CAGGTAAAGAatcttttgaaactttttcaattattatatttttgagTCAG
TTTTTATTAGCACTTGTAACCCTTTCGTAGCAAATTCTCAAACTTCCTTA
GTATGAATTCCCATTTCACAACATTTATTAGTATAAAATTCCAAATCCCT
AAAATTGAATTCAATGTTCTTTTTATTAAACTTAATAGAATCAAGTAGCA
GCTGAACAAGTGCGCAGGCAGTTGGATATGAATGAGGATGAgagagaaaa
tcaaaaagataaATTACCTCAAGCTACCTGTGCAAATAAACGAAAGGTAA
TAGAAGTGTTTggttaattttttgttcatcttCTAAATCCTCTCCCTTGA
TCTACTAATTGTAGGGAGGGGCTTTTTGAGAAGGTAAAATGGCTAATACA
GATAATTGTGGTAATTATAATTTCTGTTTTCAAAAGTTGGTTGGGAGTGG
GatgtcaaataaaaagaatgaaattttgaaattgaaaaacttgTTCTGTT
AACTTTTGTTTAGACCTGCAGTCCACACGTGTCACCTGTCAAAAGAAAGT
GCAGTCAAAGAAAGCTCACtccaaaaaagccaaaaaaggtACAGTAAGCA
GGAATAGGCTTTGTCAAGAATATATACATATCATTATTAATAGTTTGACT
GTGATGactatttattttgaatatgcTGCAAAAGTGCTTTGTGGTTTGGC
TCTCAATTTGATAAGGGAGTGCTGACAGATCTTATTATGGAAGTACACTT
TTCAACTTAACTTAAAGATGATcagttaaaatattatttttgattttatc
agaCATTGGCCATTTTCAACCCACAAATAGTGAAAACAATTCGACACAAA
TTTCAATCAGAAAGCCAAAATCAGGTAAATATTAGGATTTTCCTtttgca
cccccccccccccccNTAACGCCCTCAACTGACATAAAGCCTTATTCTAA
CGCCCATCATACATTACATTGCAGAGTAACCCCTTATTTACCTGTTGTAG
TGGAAAATAAATTCATACCAATAATTGCCATGTTCCTCCGAAAAAAAATC
CCCTAGCAGAAAGGGGAGGAGGAAACCATGAGAATGTAGGGAAATTAGGG
TGAAGTACTGTAATGTCACTGAATTTTTGTTTACTGCTAAAGCTTAAGTC
AAGTGTACCAGAATTACCCATATTTGTCTAAAATATTTTAAcatgtttaa
aaaatgttttattgtgTGAGTAATTCccatttgcaatttttctataATAC
TTCAAGTTATTTCCTGATAAACTCATTTCTTTCATTCAGATATTGGATAC
CGTATCAGTTTCCCAGACAAGTCCAGTGTTGTTCCCCGAGGTAAATGATA
TCAAAAATTACTTGTTTCCTTGAGAAAACGTTTTGCTTTTTTGAGCTCGT
CTGAAATATTCAGTTGccaaacaattttttcttcaacagcaccaaaaaaa
attttttcgaccTTGTATACCTTATGAAACAATTGGGTGTatcttttgcc
aaaaaacttaCTGAGTAAAAACCTGGTGATTATTTGTCGACTGGTTTTCG
ACAGTTTAATTGAATAAAACTAAATGCAAGCCTCAATTTTTACTAGTTTC
TTGTTTTTACAAAttccaactttttttaggttagAGAAGAGATTGACGAT
GATCCAACAAAGTCCCTTTCGGATGTTAGTGTGGCATCGAACAAGGTACA
AACTTTCTTTCTTAATTGTTAATTAGGACAAAATTGGCTTTTGGTTAACA
TTTAATCAATCGATTTAGTTTATTGATGACATTTAGTTAATTGATTTACT
TGATTTGAATTTTCGTCAAATGTTCATTGTATTTCTTGTTTTAGAGTACC
TGTTATTCACCAAGTTCGCCAGAGTACTCTCTTCAGCATGAAACTCAAGA
TACCCAGGCTGTGTCACGCGTGCATGCGTCGGCAAATGAAGTTGTCAGGC
AATTCAAGCTTGATGGTGAGCTcttttaaatagtttttaaCCCATCACAG
TACACTAGAAGCTCTTTCGCATTCGAAAGATAGCTAAATGGGGATGATGA
AAGAGTTTGAAGTTTGAGCTTTTCATTGACTTCTTTTTCCTTTCCATCTT
GGTATAAAGTGTCtaaatataacttttgatagaatctgATTTAGATACCA
CGTTTGTGCCCGTTGAAAACGTAATTCAGGACTGGAATATTTTctagaat
aaaataaattaatgaagacgaaaaacaaagatcaacttGACATTTAATTT
GTTTTCTACAGATATTTCGAGACATGAACATTTGATTCTGGCTCGTCTAA
CCCTTGGAAAGTTTAATCGTGACAAAATAAAGGAGAAATGCGAGAAATAT
GATATACCCGTCCCGGCCCGAGAGAAAAAGGTTACAGACGAGTGTGTGGA
ATTTGCCAAAGGAATGTTGAGAGCAAAGAAATTGACCATCTTGAACAGAC
CAGTGGAAACGGTAGATGATATCTTCATACCCGTCTACGAGTAAGTTTGA
CTAAATAATTGATACTCACTCGGAAATGGTTATGAAGATATCGTCTTACC
TCAATGAACTCTTTTCTCGTTTTTccgtcaaaaaaaagaaacttgtCGAT
ACTAGGTTTTGAACTCGTTTCGGGTTATTTGACTAAAacataattcaaat
tcaaattctgcttcattttaaattgagaaacaaaatttttgaccgcgaaa
attagttttagtAAGGTACAAGGTGAATGTTTTTAAACGATAGTTGTATT
TCATAACGTtattaatattttatttattttttttctttaaaatttcttaa
cgatatttttatcttttttattttgttatgtatttttcttttaaaaaaaa
cgaTATTTGTAAATTTCTTAACGTTAttcatattttctttattttatatt
tttctttaaaaaaaaacgatatTTGTAAATTTCTTAACGTTATAGTAGAG
ggaattttgtaaaatcgctcgactgttttgttagaagcacttgttataca
tttttggaaagctaaggggtaggggaatcgaaattactatgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023381XLOC_023381Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038909-exon-sc0001963-1491911889:13742..13952TCONS_00038909-exon-sc0001963-1491911889:13742..13952Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1510915933:13742..13952TCONS_00038909-exon-sc0001963-1510915933:13742..13952Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1575043694:13742..13952TCONS_00038909-exon-sc0001963-1575043694:13742..13952Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1491911889:15217..15430TCONS_00038909-exon-sc0001963-1491911889:15217..15430Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1510915933:15217..15430TCONS_00038909-exon-sc0001963-1510915933:15217..15430Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1575043694:15217..15430TCONS_00038909-exon-sc0001963-1575043694:15217..15430Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1491911889:15799..15820TCONS_00038909-exon-sc0001963-1491911889:15799..15820Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1510915933:15799..15820TCONS_00038909-exon-sc0001963-1510915933:15799..15820Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1575043694:15799..15820TCONS_00038909-exon-sc0001963-1575043694:15799..15820Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1491911889:15876..16094TCONS_00038909-exon-sc0001963-1491911889:15876..16094Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1510915933:15876..16094TCONS_00038909-exon-sc0001963-1510915933:15876..16094Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1575043694:15876..16094TCONS_00038909-exon-sc0001963-1575043694:15876..16094Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1491911889:16280..16387TCONS_00038909-exon-sc0001963-1491911889:16280..16387Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1510915933:16280..16387TCONS_00038909-exon-sc0001963-1510915933:16280..16387Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1575043694:16280..16387TCONS_00038909-exon-sc0001963-1575043694:16280..16387Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1491911889:16605..16965TCONS_00038909-exon-sc0001963-1491911889:16605..16965Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1510915933:16605..16965TCONS_00038909-exon-sc0001963-1510915933:16605..16965Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1575043694:16605..16965TCONS_00038909-exon-sc0001963-1575043694:16605..16965Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1491911889:17381..17431TCONS_00038909-exon-sc0001963-1491911889:17381..17431Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1510915933:17381..17431TCONS_00038909-exon-sc0001963-1510915933:17381..17431Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1575043694:17381..17431TCONS_00038909-exon-sc0001963-1575043694:17381..17431Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1491911889:17721..17786TCONS_00038909-exon-sc0001963-1491911889:17721..17786Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1510915933:17721..17786TCONS_00038909-exon-sc0001963-1510915933:17721..17786Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1575043694:17721..17786TCONS_00038909-exon-sc0001963-1575043694:17721..17786Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1491911889:17936..18056TCONS_00038909-exon-sc0001963-1491911889:17936..18056Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1510915933:17936..18056TCONS_00038909-exon-sc0001963-1510915933:17936..18056Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1575043694:17936..18056TCONS_00038909-exon-sc0001963-1575043694:17936..18056Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1491911889:18353..19133TCONS_00038909-exon-sc0001963-1491911889:18353..19133Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1510915933:18353..19133TCONS_00038909-exon-sc0001963-1510915933:18353..19133Clytia hemisphaericaexon
TCONS_00038909-exon-sc0001963-1575043694:18353..19133TCONS_00038909-exon-sc0001963-1575043694:18353..19133Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001963supercontigsc0001963:13742..19133 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.125556	0.24257	0	0.461441	2.63469	1.79741	1.05192	0.681667	0.833008	0.479119	0	1.21326	0.0773969	0	0.0714252	0.153228	0	0	0	0	0.136392	0.780942	0	0.154107	0.487275	0.22259	0.181407	0.242605	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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