XLOC_021088 (gene) - C. hemisphaerica

Overview
NameXLOC_021088
Unique NameXLOC_021088
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0001387:9972..22192-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_021088 ID=XLOC_021088|Name=XLOC_021088|organism=Clytia hemisphaerica|type=gene|length=12221bp|location=Sequence derived from alignment at sc0001387:9972..22192- (Clytia hemisphaerica)
TGAAATTAGAGATGTGCTCAACATGGATTGTTGTGTTATATCAATACACT
GAAGATTTGTGAATATTAGTGGGACACAATGAAATTAAGTAAGTGGCATT
ATTCAAAAGTATATATTTCATTATTCTAAAGTCGGGTTTAATAACAATTG
TCAGCTTGATTATACATTTCTCTTAAAGAAATGAGATGAAATTAAAGTAA
AATCTTGTTGGAAAGATAATTCAGAGTAGAATTTCCTAAATCTTTAATTT
TACCCATCAAACTATCTGCCTTGTCGTAGCTTCCTCCGCAGCTTGTACTT
CCCGCTGATGAACAATTTGTTTTTATATTTTGAAAAATCTTGCCGTGACA
GTCTATTTCGGCTAGATAGATTTTGTGTCTCATTTTGTTCCTGTTTTCTT
AAGAATAGTAAATAGATGCTTGTGAAATATATCTTCGACACGGAAAGGTA
ATCCATACCCTGCGCCCATCCGTAACAAATAAAACTCTGCGTTATCTTTC
CTATGAAGAAGAGTTTTGCACATGTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TTTCAGAACGCAGCTCTCTGTCAGGGTTGGTTACTTTGGATAGGCGTAGG
TAAGATGGCCAATCGGGGTTATGGAGTGCGCTGTGTACGGTTTTTGCCAT
GGCGAGGTCGATCATTTCGGTGACGGGTAGCCATTTCAGCTCGATAACAT
CTTTGATGGAGGCGTGACTCTTCAGCACAAAACCAGCCGCGGCGTTCTGA
ACTTTCTGCAAACGTTTTAGTTGGTATTTTGCAGCATCTGAAAGTAGCAC
AGATCCATACATTACACGTTTTTTTTTTTTTAAGAAACTAGTTTTACCAA
GCAGCCTCAATGTTTCTTAAGAAATCGGCCTTTTGAGCCTTAAATGTTTC
TTACATGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GTTGATGACATTCCATGATTCTGAGGAAGTTTTATTTGCGAGAAGGTTTT
TTAGAAACTTTTTCTTTGCATCTCGGATATTTGATTTGAGATCGTTTCTT
GTCTTTCGGAGCTGCTCCAGCTGTACGGCGTTTCGATCGTTTTTCAGACT
CACTCGAAGTTCTTCTTTCTGACGCTGCAGGTTTCGTACATCTAGATCTT
TCATCCAAGGAGATGACGGGCGTGTCAATTTAACTTTTCGTATAGGTGCA
TGGCGGTCAATACACTCAGTGATTAGTTTATTGAGTGCACTGACCTTATG
TTAGTAATTTACGTCTTTGCTAGGCGTCATGAACGGAAAAATACTAAATT
CTCCTTTTTTTTCCTTTTTATAGTTATTGTATTCATTGCTGGTCCACCTT
GTCATCCACGCCGTTCTTGTGAACGCAAGTAAGTTTCCTCGAGAAATTCC
TAAGAAATTTCTATTGTGATACTCCCGAAACAATCCCAAAATGCATCGCT
TTTTTAGGAAAATCAAATACTCCGATAAGATCTATTGCATGGTTCCATGA
TCATTTTTAGGGCAATTTCATCATGTTATTCTTATAGTGTACATTCTTAT
AAAAACGGAGCGTGTGGTACAATCCAATTATACAACATGATAAATTCTAT
ACGTTCCTTCCCTTCATTTACAGCTTGCAGGAGTAGCTTTGATTTGGTGA
ATGGCTATTGCGTCAAACTGTTAGGATTAAAAAATTTTAATAATGCAAGG
AAAGTCTGTTATAAGATGACGCCAACTGCTGCAGTCCCCCATTGGGCGGG
AGATGATGCAAGCATCTTCCGCGCCATCGAACAGTTGGGCGGAGACTACA
ATAATATGAAGGTTTGGGCCAGCGGTGTTTTTATAGGGACAAAATATATG
TGGGGAGTTAATTGTAAGTATTTCTACATTTTTGTCATTTTACTTTTTGT
TTTGTTTTTAAATGTTTTGTTAACTTCCGCCATTATGAAAGGGAACGCTT
GTAAGGAGGATCGCCTCTGTAGATTCGAACGTTTGCTTCCTTCCTAAATT
TTATTCCATATTATCCATAATAACTACGTAACTGAAAGGTTTTTCTTTTA
ATAAGAGTGATATCATTTGCTTACTCATCAATCTTAATTTACAAGCTTTT
TCACATTGGATTGACACAAATGTGGAGCAAGAGGGAAAGAAAAACATTTT
TTTTGTTTATTCATAGCAACTGATTAAAAATAGTATTATTCAGAATTTGT
TTCTACTGGTAGAAGTAGTCTAACACAGGACATTTTTGAGTAGCTACGCT
CCACCACAGAGACATTCAGAGTTTTGCATAAAAATGTCTGAGACACGGTA
TGTTGCCTAACCGTAACAGACCGAACTTTTCTTTTCAGTCAGCGAAAAAG
AGTTTGGTACAGGCTAACTGTTACCATGGTCTAAAGTGTAAAGTGTTACA
GCAAAGCGATTATATTACGTTCAATTTAAAAGTGTTGCCTATTGCTCTTA
GTGTGATATAGATTACCTATGGATAAACATATTCTGTTTGGTCTTTTTAG
ATGAGACTCCAGTCACCGACACGACGAATTGGAAAACATCCGCCGCCCCT
GGAAAGTGTCTTAAGTACAAAGTGAACAAAAAGGACAAAAACAATGGTTA
TGCTTTGGCAGATTGTACCCTATACACCTCACTCTTGTGCCAAAGAGAAA
AAAATGGTACAGTAATATCAGTCAACTCTCCTTAATTCGAACCTCTTTTA
TTGGAATTTCTCTTTAATTCGAATTAAAATATTGGTTCCCTCCGCTGGAA
AGTTATCCAAAATATTTTCCGTAATTCGAATCTTTCTATATAATTCAAAA
ATGTCAAAGTTGCAATACAATAAAACTGAGCAAAGATTTTCGTAGTCTCT
ATAGATAAACTTCCTATAAGAAACTCTTTCCGCTAGAGGATTAGCCCAGC
AAGGCACACAAAGTTGTTTCAACGTTTGTCTAACGTTCACAACGTTCATA
TAACGTTATATTAACGTTTAAACAACGTTGTGTGCCAGCTGGGCAGAAGC
CTAATATTTTCGTTAATATTAAAGAAAAATTCTCCTATTTTCACCATAGC
TCTCGGAAATTGTCCAACCCCTTTTACAGGAAGTGCATTTGAAGTTGGGA
ATATGTGTTTCAAGGAGCTTGATACAACGGGAGTTCCAGGAGATAACGAG
TATTTTTGTAATAGTCATGTTCAAAATGATTATGTACCCTTCATGTCACA
ACCTCTCTCCAAAGAAGTGATGGATGGATTGTCAACCGATGTAGGAATGC
CTGTGGATGTTTGGACACCATTCCAAAGGCAAACCGATTACTCATACCTT
GGGTTTGAACAATAGACAGCTCCAGGCTTTTAAACTTTACTCTTGGTCTA
TAAGCACTGCTATGGGCGGCCTCTTAGTGACCCCCACCGGGAATTATCGC
TTTTTGATAGGAATAGAAATTTTAAACAAAAGAAGTTCATCAATAGAGAT
TGAAAAAGAAGAATGTTTAAAACACAGCTGATTGGCTTAGGTTTCGAAAC
TCTATTGTTCCATCAAAACTTTAGTGCGCATGCGATGTATCCGGAGAAAT
TCAATATTCAAAACAAGAGCAGTGCGCATGTCCCGAAAAATAGGAGTTTT
ACGCTCGAAACGAAGGAATATATGACGTAGCCTATTTAAATTTTAAAAAT
CCGCAGACACGTGTTTCGTCCTTTCAAGGGCTTGTCAGTGCGGCTCGGGA
TAGCGAGGGTTCAATCCTCAAAATGTCCGATATAATAAGGACCTTGGATT
AGCAACCTAGACCCGCAAAAAAATTAATTGATTGATATAAGAAGTGATTT
CTTTATGATGATTTAATGCCCTCATTTTCTGCCTTTTTAAACTTTTTTGT
AAGGTAATTATTTTTTAGCATTTAGACCATAACTTTTGATCTAATTGACC
AAATTTGACAAACGACCCCTCGAAATTTAAGTTTATCTTTCCTATTTTTA
ATGCGAAATTGATTCTTTAAAAGTCCATAAGACTCGAGAAAATTCACTTC
GACGGACTTTTTTCTGGGACACCCGAAAATAAAAAAGTGCTAAGTTATCG
AATACCCTTCTTCTTCTAAAATTATCGGAAAACAAAGTACAGCCAGATTA
AGACTCAAGTCGAGGGCATGCCCTGTTCTAAACTTGGATACCTTAAGTTT
AGAACAGGGCATGCCCTCGACTTGAGTCTTAATCTGGCTGTACTTTGTTT
TCCGATAATTTTAGAAGACACTGTGTCCAGGAAAGTATAGGTGAAGGGGT
CACCATTTTGAAAATACTACTTAGAGTTGAAGTATTTATTTATAAGTTAG
AAACCATCATGCGAAACAGTCTACCTTAGTCTGAATCGCAGACCTCTACA
AAACTCCAGGTAGTATAAGGAGCACGAGTCTGCTAGTGGATGCCAGCAGC
CTAAGTCCACCTTGGCTAAATCTAAAAACGGAAAAACTACCACATACTCT
ACCGGGCCACTTTAATCACACCATCCAGTCTATGTACAAGCTTTAAACAC
TAAATGTAATATTGGAAGTTAATAAGCGTTTACCTTCGAAATCCATATAA
TAAGCATTAAGGCTAAAATTTAGGAAATCCTTAGCTATCTAAGGCTTGGA
CCAAAATCGGGATTGCTTATAGAAAAATGTATAGTTGGTCCCTTCACTTA
GAAAATCATCCAAAATACTTCCCGTAAATTATAAACTATAATGCCTATAA
TTATAAACCCGAAGAAATTCTTGGTCCCTTGAAGATCGAATGAGAGAGAG
AGAGAGAGTCAACATGAAAAACATATTATTTTACTGTCCGCCTTAGCAAA
AGCCAAAAATGGAGTAATACCATATACTAACGGACCACTTAACCGCGCCA
TCCAGTCTATAAAAAATCTTAAGTGGACCCCGAAGAAGATGTTTGTTCCA
ATTGAAGATTGAATTAATGAGAGAGTCGTCAATAATGCATCATTTGTAAT
TTCTCTTCTTCTAGACGGGTCACAAATTTCACCCTAACACTACTTTTATG
AGAACGCTGCAACTAAATGTCTAAAGTTTGATGGTCGTAATAATGGGGGT
CTGGTACCAGCTGATTGCACAACAAATATTGCAACTCTTTGTTACTATGG
TAAATAGATTTTTCATGGTTTGTTAAGTTACGTCATTTCCGCCATTAGCA
TTATTAAAGCAAACGTTAGAATCTGTAGATGAAATCCCTTACGAAATTAC
GTAACTTGAAAAAATATGAAAAACCTCCTAGACGTTAGATGTTAGATGTT
ATCTCCCGATCAGGAAGGGCTACAGTGGCGTCTTCATAATTCTAACATCC
CTGTCTCGCAGCCCCGATGGAACTTTATCCCACAGTGGAGATAAAAATTT
CTTTGGAAATCTCAATGAGGGTAGAAATTCTATTGTCCTTATAAAACCCA
GTGGAGATGGTTTTGGAGAGAGAATTCTTTTAAATTGAATTTCGAATAAA
CATGTGATCAAAGTCAATTTCCCAGTGAGTTTGAAATTGGGGGTCTGGAA
ATTGGAAGGCATTTTTCCCACCCGGGACGAATTTAGGACAAAAGTGGGTC
TNATTTCCCAGTGGGTTGGAAATTGGAAGGCATTTTTCCCACCCGGGACG
AATTTAGGGCAAAAGTGGGTCTGTGATACAGGGGTGGAATCAAATGTCTT
CTAAACTCGAAAAATTTATTGTCCCTTCATTTAACAATGCCTTCTAAACC
AATCTGCCTAACTTGAAATATCAATAAAATTCTAAAAAATTTGTGTTCCT
TGTGCCTGTCGAGTTATGAAGACTCACTGTATTTCAGAGAGAAAATTACC
CAATGTTGTGGAGGTCATAATTTCAGCCCCGGGATTTCAGCCTTATGGAG
TCGTTTAAAATATCAGAATAGTCTCTTACAGATAGGCAAAACTTCAGGGG
AGGTCACTGAAATTTACACAAAAAGAGGTATCTGAAAATTTTCATCAATA
TACTGATTTTCCAAAGACGATCTCCTGAACAAAAGATGAATAGTTTTTTT
GGGAAAGCCCAACGATATCAGCGGGGAAATCTGTTTATTTGTGCAGAGTT
TACAACCTATAAGAAAAGCAGTTGCCAATAAATTTTCGAGGAAAGACCTC
TTACTCTACCGCCGACTCTATTGGCTGTAAATTCACTTCTGTAATAAAAA
TCTTTCACGAATTTTCCTTCGGCTTGGAGGATACCATTTACATAGTAGAT
TTTCTAGATTTTCCTAAGGAATAAAAACTCCTCTTACAAAAGAATGCTCA
AAAGGAGCGAACTTTTCCATGGAGATCTGGTACATAATATTCTACCAATT
TATTTAGATCCTAATGTTCTATGGCCTGAAGACACCGCTGATGACCTTGA
CATTGGTGGCGCTGGCGATAATTCCATCCCTTTGATAGGTCAGAAATCAT
TAAACTTTAAACTTGAATATGCTTCCCGTTGGAATGCTAAAACAGGCTGT
TCCAAAAAAATTCCACACAGGGGGTGGATGGACGAACCTTTTCAAGTCAA
AACAAATTTCTTGAAAATGTGTTCCCTGGAAAAATGGCAAAATTTGCAAA
AAAGGCCCTGGAAAAAATTAAAGTGAGGGTGGAAGAACTATTCCCAGTCA
TTTACCCCCTGGAAGTTTAAGAATAGCTTTATACCCCCTGGAAATTCTTC
ACCCCCTGAAAAATTTTCGTCCACCTCCTGTATGGTTATAAAATGGAATG
GCCCATTGTAACGATAAAACAAGTGGTTGGTTCAAACGAATAAATAGTCT
ATCTAATCTGATATTGAAATGACTACAGATATACGATTTTAGTTGTTGTT
TTGCAACATCTAGCACTGAAGATGGTTTTACCGAAAAGCTTTTGCTGGAA
ATAAAAATAAAACTTGTTGTATTTTCAACTTAGAAACGCATACGTCTTCG
GATAACGAGGCACAAATGTTTAAGTGTTTTTTATTCCCTTTTGCTGCGTG
GATACTAATGACTAATAGTCACTCAGATACTATACTACTAACGCTCGAAC
CGAAGGCGTAGTGGTATGGTGGTTATCATCCTTGACTCCTGCCTGGGAGG
CCAGAGTTCGATACCCACCGTGTCTCTACGATTCACTTGGCAAGTGAATA
TCCCTTTGCCCGGGTCAACTCATGCCATGTGAGGAGAATCGGGAACCATA
ACTCTGATACAAGAGTGTGGGTAGATTAGACAGACATTGTGACGTGCAGT
GACACTCGTAAGGTTCGACTTCGCGTGAGCATCGCTCTCCCAGTGTCATA
CGCCATGGCTTGACAGCTCGGGTCTGTCAAGTCGCAGTGTCTGTCAGCGC
CGTGATTCCTACTTCTTCGTGGGTAGGACCCGTCCCAAATGCATTTGGAG
GGCTCAATCTATCTATCTATCTATCTCAGTCTATCTATCTATATCTCTAC
TAACGCTTGAACCAAAAACAAACCGACTATTTTTGTGTACTTACATCATA
CGATAATACTAACTTGATTATATCTTGTCTTACTCGCTATACAGAATGTG
GTCTGGACAACGTTAACGTCACGGCGTATAAAGGGTATGCTGAAGCGTGT
TACGATGCCGTAACTCATCCGGAGACGTCACACGGAAAAGCAATGGCTTA
TTGCGGTGAGCTTCAAGGAACATTGCCTTCTATGGCGTTAAGATACATTT
ATGAAAGATTCAATAATTTTACAAAAACACTTGGAATTAATGGTACGGTA
TGGATCGGGGGCCACGATCGAATTGAGGAATAGTGTGGTCGTGTTACAAA
AGTACAGGCTGTTTGTAGGAAAAAAATAATATATAGCTGAAACTTTCTCC
AGACCTTCTCTATAGGATGCTTATGCCTCAGGAAAAAATCCCCTAAAATC
CCACTGGTCGAACAACCCTTTTTTGGGCAATTTTTTTTTTCCTCAGGCAA
AACCCTAAGGTCAAAAATTTTTGAAAATTTCAAACTCTTTTTGAGACAAC
ATCATGTATACCATTCGAAAGGTCTTGAAAAACTATATAGAAGACTTTTA
GACGGGTATAGCCGATTAGATTACCTAACTCGAGATACTTCACGTAGAAG
ATGCAATTTTTGGTCAATTTTAGACCAAAATGTGGCGAAAAGTTCTTGTG
GATTGACTTTCTGGTTACCCCATACAAACACGATGTGACATGAAAGTGAA
GAGGCATGATTTGTTGGTTATTGTTTGATTTCTTGACTTGTATATCTTAT
GGCAAATGGGATAGCAAATGACTTTTCATGTATTGCTTGGCTCTACATAT
GATACCTCTAACTTTGAACACCTCCAGAATGTTGAAAAAAGCATTTTATG
AGATAAGTTTTGATTGTAATTTTCATGGAAATTGNACACCGTTTAACAGT
CTCGCCATCTCCACCGTAGAGGCGGTAGGTAAAAATGCTCACTTTAGTAC
TGTGGCTGGAAGGTTAGAGAAATGTAAGCATTGCCATTTTTTTCCTTCCT
TTAAAGAGAATGTTTTAGATGTTTGAACATGATAATAATGACAATTTTAT
GTATCTCTCCTGAAAATTTCACAAAAATTCATCTAGAGGAAAAGAAGTTA
TGATTAAAAGGAGTTCTTTAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00035910TCONS_00035910Clytia hemisphaericatranscript
TCONS_00035909TCONS_00035909Clytia hemisphaericatranscript
TCONS_00035908TCONS_00035908Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00035908-proteinTCONS_00035908-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001387supercontigsc0001387:9972..22192 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.83	5.42	4.88	5.01	25.23	17.9	24.07	24.37	9.95	12.89	10.79	10.92	16.06	14.47	8.05	9.68	9.32	8.58	10.79	12.61	10.04	10.12	7.08	8.67	15.65	25.39	13.58	11.81	11.55	10.23