TCONS_00035910 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035910
Unique NameTCONS_00035910
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035910 ID=TCONS_00035910|Name=TCONS_00035910|organism=Clytia hemisphaerica|type=transcript|length=1469bp
tgaaattagagATGTGCTCAACATGGATTGTTGTGTTATATCAATACACT
GAAGATTTGTGAATATTAGTGGGACACAATGAAATTAATTATTGTATTCA
TTGCTGGTCCACCTTGTCATCCACGCCGTTCTTGTGAACGCAACTTGCAG
GAGTAGCTTTGATTTGGTGAATGGCTATTGCGTCAAACTGTTaggattaa
aaaattttaataatgcAAGGAAAGTCTGTTATAAGATGACGCCAACTGCT
GCAGTCCCCCATTGGGCGGGAGATGATGCAAGCATCTTCCGCGCCATCGA
ACAGTTGGGCGGAGACTACAATAATATGAAGGTTTGGGCCAGCGGTGTTT
TTATAGGGACAAAATATATGTGGGGAGTTAATTATGAGACTCCAGTCACC
GACACGACGAATTGGAAAACATCCGCCGCCCCTGGAAAGTGTCTTAAGTA
CAAAGTGAACAAAAAGGACAAAAACAATGGTTATGCTTTGGCAGATTGTA
CCCTATACACCTCACTCTTGTGCcaaagagaaaaaaatgCTCTCGGAAAT
TGTCCAACCCCTTTTACAGGAAGTGCATTTGAAGTTGGGAATATGTGTTT
CAAGGAGCTTGATACAACGGGAGTTCCAGGAGATAACGAGTATTTTTGTA
ATAGTCATGTTCAAAATGATTATGTACCCTTCATGTCACAACCTCTCTCC
AAAGAAGTGATGGATGGATTGTCAACCGATGTAGGAATGCCTGTGGATGT
TTGGACACCATTCCAAAGGCAAACCGATTACTCATACCTTGGGTTTgaac
aatagacagctccaggcttttaaactttactcttggtctataagCACTGC
TATGGGCGGCCTcttagtgacccccaccgggaattatCGCTTTTTGATAG
GAatagaaattttaaacaaaagaagttCATCAATAGagattgaaaaagaa
gaatgtttaaaacacagctgattggcttaggtttcgaaactctatTGTTC
CATCAAAACTTTagtgcgcatgcgatgtatccggagaaattcaatattca
aaacaagagcagtgcgcaTGTCCCGAAAaataggagttttacgctcgaaa
cgaaggaatatatgacgtagcctatttaaattttaaaaatccgcagacac
gtgtttcgtcCTTTCAAGGGCTTGTCAGTGCGGCTCGGGATAGCGAGGGT
TCAATCCTCAAAATGTCCGATATAATAAGGACCTTGGATTAGCAACCTAG
ACccgcaaaaaaattaattgattgATATAAGAAGTgatttctttatgatg
atttaATGCCCTCATTTTCtgcctttttaaacttttttgtaaggtaatta
ttttttagcatttagaccataacttttgatctaattgaccaaatttgaca
aacGACCCCtcgaaatttaagtttatctttcctaTTTTTAATGCGAAATT
GATTCTTTAAAAGTCCATA
Run BLAST on NCBI

transcript from alignment at sc0001387:14564..22192-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035910 ID=TCONS_00035910|Name=TCONS_00035910|organism=Clytia hemisphaerica|type=transcript|length=7629bp|location=Sequence derived from alignment at sc0001387:14564..22192- (Clytia hemisphaerica)
TGAAATTAGAGATGTGCTCAACATGGATTGTTGTGTTATATCAATACACT
GAAGATTTGTGAATATTAGTGGGACACAATGAAATTAAGTAAGTGGCATT
ATTCAAAAGTATATATTTCATTATTCTAAAGTCGGGTTTAATAACAATTG
TCAGCTTGATTATACATTTCTCTTAAAGAAATGAGATGAAATTAAAGTAA
AATCTTGTTGGAAAGATAATTCAGAGTAGAATTTCCTAAATCTTTAATTT
TACCCATCAAACTATCTGCCTTGTCGTAGCTTCCTCCGCAGCTTGTACTT
CCCGCTGATGAACAATTTGTTTTTATATTTTGAAAAATCTTGCCGTGACA
GTCTATTTCGGCTAGATAGATTTTGTGTCTCATTTTGTTCCTGTTTTCTT
AAGAATAGTAAATAGATGCTTGTGAAATATATCTTCGACACGGAAAGGTA
ATCCATACCCTGCGCCCATCCGTAACAAATAAAACTCTGCGTTATCTTTC
CTATGAAGAAGAGTTTTGCACATGTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TTTCAGAACGCAGCTCTCTGTCAGGGTTGGTTACTTTGGATAGGCGTAGG
TAAGATGGCCAATCGGGGTTATGGAGTGCGCTGTGTACGGTTTTTGCCAT
GGCGAGGTCGATCATTTCGGTGACGGGTAGCCATTTCAGCTCGATAACAT
CTTTGATGGAGGCGTGACTCTTCAGCACAAAACCAGCCGCGGCGTTCTGA
ACTTTCTGCAAACGTTTTAGTTGGTATTTTGCAGCATCTGAAAGTAGCAC
AGATCCATACATTACACGTTTTTTTTTTTTTAAGAAACTAGTTTTACCAA
GCAGCCTCAATGTTTCTTAAGAAATCGGCCTTTTGAGCCTTAAATGTTTC
TTACATGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GTTGATGACATTCCATGATTCTGAGGAAGTTTTATTTGCGAGAAGGTTTT
TTAGAAACTTTTTCTTTGCATCTCGGATATTTGATTTGAGATCGTTTCTT
GTCTTTCGGAGCTGCTCCAGCTGTACGGCGTTTCGATCGTTTTTCAGACT
CACTCGAAGTTCTTCTTTCTGACGCTGCAGGTTTCGTACATCTAGATCTT
TCATCCAAGGAGATGACGGGCGTGTCAATTTAACTTTTCGTATAGGTGCA
TGGCGGTCAATACACTCAGTGATTAGTTTATTGAGTGCACTGACCTTATG
TTAGTAATTTACGTCTTTGCTAGGCGTCATGAACGGAAAAATACTAAATT
CTCCTTTTTTTTCCTTTTTATAGTTATTGTATTCATTGCTGGTCCACCTT
GTCATCCACGCCGTTCTTGTGAACGCAAGTAAGTTTCCTCGAGAAATTCC
TAAGAAATTTCTATTGTGATACTCCCGAAACAATCCCAAAATGCATCGCT
TTTTTAGGAAAATCAAATACTCCGATAAGATCTATTGCATGGTTCCATGA
TCATTTTTAGGGCAATTTCATCATGTTATTCTTATAGTGTACATTCTTAT
AAAAACGGAGCGTGTGGTACAATCCAATTATACAACATGATAAATTCTAT
ACGTTCCTTCCCTTCATTTACAGCTTGCAGGAGTAGCTTTGATTTGGTGA
ATGGCTATTGCGTCAAACTGTTAGGATTAAAAAATTTTAATAATGCAAGG
AAAGTCTGTTATAAGATGACGCCAACTGCTGCAGTCCCCCATTGGGCGGG
AGATGATGCAAGCATCTTCCGCGCCATCGAACAGTTGGGCGGAGACTACA
ATAATATGAAGGTTTGGGCCAGCGGTGTTTTTATAGGGACAAAATATATG
TGGGGAGTTAATTGTAAGTATTTCTACATTTTTGTCATTTTACTTTTTGT
TTTGTTTTTAAATGTTTTGTTAACTTCCGCCATTATGAAAGGGAACGCTT
GTAAGGAGGATCGCCTCTGTAGATTCGAACGTTTGCTTCCTTCCTAAATT
TTATTCCATATTATCCATAATAACTACGTAACTGAAAGGTTTTTCTTTTA
ATAAGAGTGATATCATTTGCTTACTCATCAATCTTAATTTACAAGCTTTT
TCACATTGGATTGACACAAATGTGGAGCAAGAGGGAAAGAAAAACATTTT
TTTTGTTTATTCATAGCAACTGATTAAAAATAGTATTATTCAGAATTTGT
TTCTACTGGTAGAAGTAGTCTAACACAGGACATTTTTGAGTAGCTACGCT
CCACCACAGAGACATTCAGAGTTTTGCATAAAAATGTCTGAGACACGGTA
TGTTGCCTAACCGTAACAGACCGAACTTTTCTTTTCAGTCAGCGAAAAAG
AGTTTGGTACAGGCTAACTGTTACCATGGTCTAAAGTGTAAAGTGTTACA
GCAAAGCGATTATATTACGTTCAATTTAAAAGTGTTGCCTATTGCTCTTA
GTGTGATATAGATTACCTATGGATAAACATATTCTGTTTGGTCTTTTTAG
ATGAGACTCCAGTCACCGACACGACGAATTGGAAAACATCCGCCGCCCCT
GGAAAGTGTCTTAAGTACAAAGTGAACAAAAAGGACAAAAACAATGGTTA
TGCTTTGGCAGATTGTACCCTATACACCTCACTCTTGTGCCAAAGAGAAA
AAAATGGTACAGTAATATCAGTCAACTCTCCTTAATTCGAACCTCTTTTA
TTGGAATTTCTCTTTAATTCGAATTAAAATATTGGTTCCCTCCGCTGGAA
AGTTATCCAAAATATTTTCCGTAATTCGAATCTTTCTATATAATTCAAAA
ATGTCAAAGTTGCAATACAATAAAACTGAGCAAAGATTTTCGTAGTCTCT
ATAGATAAACTTCCTATAAGAAACTCTTTCCGCTAGAGGATTAGCCCAGC
AAGGCACACAAAGTTGTTTCAACGTTTGTCTAACGTTCACAACGTTCATA
TAACGTTATATTAACGTTTAAACAACGTTGTGTGCCAGCTGGGCAGAAGC
CTAATATTTTCGTTAATATTAAAGAAAAATTCTCCTATTTTCACCATAGC
TCTCGGAAATTGTCCAACCCCTTTTACAGGAAGTGCATTTGAAGTTGGGA
ATATGTGTTTCAAGGAGCTTGATACAACGGGAGTTCCAGGAGATAACGAG
TATTTTTGTAATAGTCATGTTCAAAATGATTATGTACCCTTCATGTCACA
ACCTCTCTCCAAAGAAGTGATGGATGGATTGTCAACCGATGTAGGAATGC
CTGTGGATGTTTGGACACCATTCCAAAGGCAAACCGATTACTCATACCTT
GGGTTTGAACAATAGACAGCTCCAGGCTTTTAAACTTTACTCTTGGTCTA
TAAGCACTGCTATGGGCGGCCTCTTAGTGACCCCCACCGGGAATTATCGC
TTTTTGATAGGAATAGAAATTTTAAACAAAAGAAGTTCATCAATAGAGAT
TGAAAAAGAAGAATGTTTAAAACACAGCTGATTGGCTTAGGTTTCGAAAC
TCTATTGTTCCATCAAAACTTTAGTGCGCATGCGATGTATCCGGAGAAAT
TCAATATTCAAAACAAGAGCAGTGCGCATGTCCCGAAAAATAGGAGTTTT
ACGCTCGAAACGAAGGAATATATGACGTAGCCTATTTAAATTTTAAAAAT
CCGCAGACACGTGTTTCGTCCTTTCAAGGGCTTGTCAGTGCGGCTCGGGA
TAGCGAGGGTTCAATCCTCAAAATGTCCGATATAATAAGGACCTTGGATT
AGCAACCTAGACCCGCAAAAAAATTAATTGATTGATATAAGAAGTGATTT
CTTTATGATGATTTAATGCCCTCATTTTCTGCCTTTTTAAACTTTTTTGT
AAGGTAATTATTTTTTAGCATTTAGACCATAACTTTTGATCTAATTGACC
AAATTTGACAAACGACCCCTCGAAATTTAAGTTTATCTTTCCTATTTTTA
ATGCGAAATTGATTCTTTAAAAGTCCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021088XLOC_021088Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035910-exon-sc0001387-1575043694:22105..22192TCONS_00035910-exon-sc0001387-1575043694:22105..22192Clytia hemisphaericaexon
TCONS_00035910-exon-sc0001387-1575043694:17165..17219TCONS_00035910-exon-sc0001387-1575043694:17165..17219Clytia hemisphaericaexon
TCONS_00035910-exon-sc0001387-1575043694:16680..16919TCONS_00035910-exon-sc0001387-1575043694:16680..16919Clytia hemisphaericaexon
TCONS_00035910-exon-sc0001387-1575043694:15887..16042TCONS_00035910-exon-sc0001387-1575043694:15887..16042Clytia hemisphaericaexon
TCONS_00035910-exon-sc0001387-1575043694:14564..15493TCONS_00035910-exon-sc0001387-1575043694:14564..15493Clytia hemisphaericaexon
TCONS_00035910-exon-sc0001387-1510915933:22105..22192TCONS_00035910-exon-sc0001387-1510915933:22105..22192Clytia hemisphaericaexon
TCONS_00035910-exon-sc0001387-1510915933:17165..17219TCONS_00035910-exon-sc0001387-1510915933:17165..17219Clytia hemisphaericaexon
TCONS_00035910-exon-sc0001387-1510915933:16680..16919TCONS_00035910-exon-sc0001387-1510915933:16680..16919Clytia hemisphaericaexon
TCONS_00035910-exon-sc0001387-1510915933:15887..16042TCONS_00035910-exon-sc0001387-1510915933:15887..16042Clytia hemisphaericaexon
TCONS_00035910-exon-sc0001387-1510915933:14564..15493TCONS_00035910-exon-sc0001387-1510915933:14564..15493Clytia hemisphaericaexon
TCONS_00035910-exon-sc0001387-1491911889:22105..22192TCONS_00035910-exon-sc0001387-1491911889:22105..22192Clytia hemisphaericaexon
TCONS_00035910-exon-sc0001387-1491911889:17165..17219TCONS_00035910-exon-sc0001387-1491911889:17165..17219Clytia hemisphaericaexon
TCONS_00035910-exon-sc0001387-1491911889:16680..16919TCONS_00035910-exon-sc0001387-1491911889:16680..16919Clytia hemisphaericaexon
TCONS_00035910-exon-sc0001387-1491911889:15887..16042TCONS_00035910-exon-sc0001387-1491911889:15887..16042Clytia hemisphaericaexon
TCONS_00035910-exon-sc0001387-1491911889:14564..15493TCONS_00035910-exon-sc0001387-1491911889:14564..15493Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001387supercontigsc0001387:14564..22192 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.087381	0	0	0	0	0	0	0	0	0.559442	0.094464	0	0	0	0	0	0	0	0	0.0324321	0.15028	0	0	0.0541354	0.165292	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035910 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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