TCONS_00035909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035909
Unique NameTCONS_00035909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035909 ID=TCONS_00035909|Name=TCONS_00035909|organism=Clytia hemisphaerica|type=transcript|length=1740bp
ATGATTCTGAGGAAGTTTTATTTGCGAGAAggttttttagaaactttttc
tttgcatCTCGGATATTTGATTTGAGATCGTTTCTTGTCTTTCGGAGCTG
CTCCAGCTGTACGGCGTTTCGATCGTTTTTCAGACTCACTCGAAGTTCTT
CTTTCTGACGCTGCAGGTTTCGTACATCTAGATCTTTCATCCAAGGAGAT
GACGGGCGTGTCAATTTAACTTTTCGTATAGGTGCATGGCGGTCAATACA
CTCAGTGATTAGTTTATTGAGTGCACTGACCTTATGTTAGTAATTTACGT
CTTTGCTAGGCGTCATGAACGGAAAAATACTAAATTCtccttttttttcc
tttttatagTTATTGTATTCATTGCTGGTCCACCTTGTCATCCACGCCGT
TCTTGTGAACGCAACTTGCAGGAGTAGCTTTGATTTGGTGAATGGCTATT
GCGTCAAACTGTTaggattaaaaaattttaataatgcAAGGAAAGTCTGT
TATAAGATGACGCCAACTGCTGCAGTCCCCCATTGGGCGGGAGATGATGC
AAGCATCTTCCGCGCCATCGAACAGTTGGGCGGAGACTACAATAATATGA
AGGTTTGGGCCAGCGGTGTTTTTATAGGGACAAAATATATGTGGGGAGTT
AATTATGAGACTCCAGTCACCGACACGACGAATTGGAAAACATCCGCCGC
CCCTGGAAAGTGTCTTAAGTACAAAGTGAACAAAAAGGACAAAAACAATG
GTTATGCTTTGGCAGATTGTACCCTATACACCTCACTCTTGTGCcaaaga
gaaaaaaatgCTCTCGGAAATTGTCCAACCCCTTTTACAGGAAGTGCATT
TGAAGTTGGGAATATGTGTTTCAAGGAGCTTGATACAACGGGAGTTCCAG
GAGATAACGAGTATTTTTGTAATAGTCATGTTCAAAATGATTATGTACCC
TTCATGTCACAACCTCTCTCCAAAGAAGTGATGGATGGATTGTCAACCGA
TGTAGGAATGCCTGTGGATGTTTGGACACCATTCCAAAGGCAAACCGATT
ACTCATACCTTGGGTTTgaacaatagacagctccaggcttttaaacttta
ctcttggtctataagCACTGCTATGGGCGGCCTcttagtgacccccaccg
ggaattatCGCTTTTTGATAGGAatagaaattttaaacaaaagaagttCA
TCAATAGagattgaaaaagaagaatgtttaaaacacagctgattggctta
ggtttcgaaactctatTGTTCCATCAAAACTTTagtgcgcatgcgatgta
tccggagaaattcaatattcaaaacaagagcagtgcgcaTGTCCCGAAAa
ataggagttttacgctcgaaacgaaggaatatatgacgtagcctatttaa
attttaaaaatccgcagacacgtgtttcgtcCTTTCAAGGGCTTGTCAGT
GCGGCTCGGGATAGCGAGGGTTCAATCCTCAAAATGTCCGATATAATAAG
GACCTTGGATTAGCAACCTAGACccgcaaaaaaattaattgattgATATA
AGAAGTgatttctttatgatgatttaATGCCCTCATTTTCtgccttttta
aacttttttgtaaggtaattattttttagcatttagaccataacttttga
tctaattgaccaaatttgacaaacGACCCCtcgaaatttaagtttatctt
tcctaTTTTTAATGCGAAATTGATTCTTTAAAAGTCCATA
Run BLAST on NCBI

transcript from alignment at sc0001387:14564..17578-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035909 ID=TCONS_00035909|Name=TCONS_00035909|organism=Clytia hemisphaerica|type=transcript|length=3015bp|location=Sequence derived from alignment at sc0001387:14564..17578- (Clytia hemisphaerica)
ATGATTCTGAGGAAGTTTTATTTGCGAGAAGGTTTTTTAGAAACTTTTTC
TTTGCATCTCGGATATTTGATTTGAGATCGTTTCTTGTCTTTCGGAGCTG
CTCCAGCTGTACGGCGTTTCGATCGTTTTTCAGACTCACTCGAAGTTCTT
CTTTCTGACGCTGCAGGTTTCGTACATCTAGATCTTTCATCCAAGGAGAT
GACGGGCGTGTCAATTTAACTTTTCGTATAGGTGCATGGCGGTCAATACA
CTCAGTGATTAGTTTATTGAGTGCACTGACCTTATGTTAGTAATTTACGT
CTTTGCTAGGCGTCATGAACGGAAAAATACTAAATTCTCCTTTTTTTTCC
TTTTTATAGTTATTGTATTCATTGCTGGTCCACCTTGTCATCCACGCCGT
TCTTGTGAACGCAAGTAAGTTTCCTCGAGAAATTCCTAAGAAATTTCTAT
TGTGATACTCCCGAAACAATCCCAAAATGCATCGCTTTTTTAGGAAAATC
AAATACTCCGATAAGATCTATTGCATGGTTCCATGATCATTTTTAGGGCA
ATTTCATCATGTTATTCTTATAGTGTACATTCTTATAAAAACGGAGCGTG
TGGTACAATCCAATTATACAACATGATAAATTCTATACGTTCCTTCCCTT
CATTTACAGCTTGCAGGAGTAGCTTTGATTTGGTGAATGGCTATTGCGTC
AAACTGTTAGGATTAAAAAATTTTAATAATGCAAGGAAAGTCTGTTATAA
GATGACGCCAACTGCTGCAGTCCCCCATTGGGCGGGAGATGATGCAAGCA
TCTTCCGCGCCATCGAACAGTTGGGCGGAGACTACAATAATATGAAGGTT
TGGGCCAGCGGTGTTTTTATAGGGACAAAATATATGTGGGGAGTTAATTG
TAAGTATTTCTACATTTTTGTCATTTTACTTTTTGTTTTGTTTTTAAATG
TTTTGTTAACTTCCGCCATTATGAAAGGGAACGCTTGTAAGGAGGATCGC
CTCTGTAGATTCGAACGTTTGCTTCCTTCCTAAATTTTATTCCATATTAT
CCATAATAACTACGTAACTGAAAGGTTTTTCTTTTAATAAGAGTGATATC
ATTTGCTTACTCATCAATCTTAATTTACAAGCTTTTTCACATTGGATTGA
CACAAATGTGGAGCAAGAGGGAAAGAAAAACATTTTTTTTGTTTATTCAT
AGCAACTGATTAAAAATAGTATTATTCAGAATTTGTTTCTACTGGTAGAA
GTAGTCTAACACAGGACATTTTTGAGTAGCTACGCTCCACCACAGAGACA
TTCAGAGTTTTGCATAAAAATGTCTGAGACACGGTATGTTGCCTAACCGT
AACAGACCGAACTTTTCTTTTCAGTCAGCGAAAAAGAGTTTGGTACAGGC
TAACTGTTACCATGGTCTAAAGTGTAAAGTGTTACAGCAAAGCGATTATA
TTACGTTCAATTTAAAAGTGTTGCCTATTGCTCTTAGTGTGATATAGATT
ACCTATGGATAAACATATTCTGTTTGGTCTTTTTAGATGAGACTCCAGTC
ACCGACACGACGAATTGGAAAACATCCGCCGCCCCTGGAAAGTGTCTTAA
GTACAAAGTGAACAAAAAGGACAAAAACAATGGTTATGCTTTGGCAGATT
GTACCCTATACACCTCACTCTTGTGCCAAAGAGAAAAAAATGGTACAGTA
ATATCAGTCAACTCTCCTTAATTCGAACCTCTTTTATTGGAATTTCTCTT
TAATTCGAATTAAAATATTGGTTCCCTCCGCTGGAAAGTTATCCAAAATA
TTTTCCGTAATTCGAATCTTTCTATATAATTCAAAAATGTCAAAGTTGCA
ATACAATAAAACTGAGCAAAGATTTTCGTAGTCTCTATAGATAAACTTCC
TATAAGAAACTCTTTCCGCTAGAGGATTAGCCCAGCAAGGCACACAAAGT
TGTTTCAACGTTTGTCTAACGTTCACAACGTTCATATAACGTTATATTAA
CGTTTAAACAACGTTGTGTGCCAGCTGGGCAGAAGCCTAATATTTTCGTT
AATATTAAAGAAAAATTCTCCTATTTTCACCATAGCTCTCGGAAATTGTC
CAACCCCTTTTACAGGAAGTGCATTTGAAGTTGGGAATATGTGTTTCAAG
GAGCTTGATACAACGGGAGTTCCAGGAGATAACGAGTATTTTTGTAATAG
TCATGTTCAAAATGATTATGTACCCTTCATGTCACAACCTCTCTCCAAAG
AAGTGATGGATGGATTGTCAACCGATGTAGGAATGCCTGTGGATGTTTGG
ACACCATTCCAAAGGCAAACCGATTACTCATACCTTGGGTTTGAACAATA
GACAGCTCCAGGCTTTTAAACTTTACTCTTGGTCTATAAGCACTGCTATG
GGCGGCCTCTTAGTGACCCCCACCGGGAATTATCGCTTTTTGATAGGAAT
AGAAATTTTAAACAAAAGAAGTTCATCAATAGAGATTGAAAAAGAAGAAT
GTTTAAAACACAGCTGATTGGCTTAGGTTTCGAAACTCTATTGTTCCATC
AAAACTTTAGTGCGCATGCGATGTATCCGGAGAAATTCAATATTCAAAAC
AAGAGCAGTGCGCATGTCCCGAAAAATAGGAGTTTTACGCTCGAAACGAA
GGAATATATGACGTAGCCTATTTAAATTTTAAAAATCCGCAGACACGTGT
TTCGTCCTTTCAAGGGCTTGTCAGTGCGGCTCGGGATAGCGAGGGTTCAA
TCCTCAAAATGTCCGATATAATAAGGACCTTGGATTAGCAACCTAGACCC
GCAAAAAAATTAATTGATTGATATAAGAAGTGATTTCTTTATGATGATTT
AATGCCCTCATTTTCTGCCTTTTTAAACTTTTTTGTAAGGTAATTATTTT
TTAGCATTTAGACCATAACTTTTGATCTAATTGACCAAATTTGACAAACG
ACCCCTCGAAATTTAAGTTTATCTTTCCTATTTTTAATGCGAAATTGATT
CTTTAAAAGTCCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021088XLOC_021088Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035909-exon-sc0001387-1575043694:17165..17578TCONS_00035909-exon-sc0001387-1575043694:17165..17578Clytia hemisphaericaexon
TCONS_00035909-exon-sc0001387-1575043694:16680..16919TCONS_00035909-exon-sc0001387-1575043694:16680..16919Clytia hemisphaericaexon
TCONS_00035909-exon-sc0001387-1575043694:15887..16042TCONS_00035909-exon-sc0001387-1575043694:15887..16042Clytia hemisphaericaexon
TCONS_00035909-exon-sc0001387-1575043694:14564..15493TCONS_00035909-exon-sc0001387-1575043694:14564..15493Clytia hemisphaericaexon
TCONS_00035909-exon-sc0001387-1510915933:17165..17578TCONS_00035909-exon-sc0001387-1510915933:17165..17578Clytia hemisphaericaexon
TCONS_00035909-exon-sc0001387-1510915933:16680..16919TCONS_00035909-exon-sc0001387-1510915933:16680..16919Clytia hemisphaericaexon
TCONS_00035909-exon-sc0001387-1510915933:15887..16042TCONS_00035909-exon-sc0001387-1510915933:15887..16042Clytia hemisphaericaexon
TCONS_00035909-exon-sc0001387-1510915933:14564..15493TCONS_00035909-exon-sc0001387-1510915933:14564..15493Clytia hemisphaericaexon
TCONS_00035909-exon-sc0001387-1491911889:17165..17578TCONS_00035909-exon-sc0001387-1491911889:17165..17578Clytia hemisphaericaexon
TCONS_00035909-exon-sc0001387-1491911889:16680..16919TCONS_00035909-exon-sc0001387-1491911889:16680..16919Clytia hemisphaericaexon
TCONS_00035909-exon-sc0001387-1491911889:15887..16042TCONS_00035909-exon-sc0001387-1491911889:15887..16042Clytia hemisphaericaexon
TCONS_00035909-exon-sc0001387-1491911889:14564..15493TCONS_00035909-exon-sc0001387-1491911889:14564..15493Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001387supercontigsc0001387:14564..17578 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.310051	0.0916399	0.541383	0.580071	0.407235	0.402028	0.627974	0.933231	0.456137	0.470157	0.407085	0.248132	0.479534	0.847903	0.148093	0.289187	0.257392	0.183595	0.200509	0.254676	0.206005	0.231988	0	0	0.542297	1.52288	0.179509	0	0.108048	0.236202
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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