XLOC_016807 (gene) - C. hemisphaerica

Overview
NameXLOC_016807
Unique NameXLOC_016807
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000748:146327..155575-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_016807 ID=XLOC_016807|Name=XLOC_016807|organism=Clytia hemisphaerica|type=gene|length=9249bp|location=Sequence derived from alignment at sc0000748:146327..155575- (Clytia hemisphaerica)
GCTTTCCAACATGAACAAACACTTTCTAGAAGAGAGTGTAGAAAGAAAAG
ATATCCTAATGTTCCAGGTGCAAACAAAAAAGAGCGAAAACAGGTATTGG
AAGTTAATTCTTTAAGATATTTTGTCTTTTCGAAGTAGAGAGTCTGTTAA
CTTGAAGGTTTTATTTTTACATAATTGTTCCCGTTTCATACCAGATACAT
ATTTTATATCAGGACAGTGTTTTCTTATTGTTATATTATGCTGATATAAG
CAAAAAATGTTTTTCTTTTCCTCTTTCTGACCAATCTTGCTCCACATCTG
TGTCAATCCATTGAATCCAATGTAAAAAAGCTTGTGAATTGAAATTGATG
AGTAAGCAGACTCCTATTTAAAAACAAAACCTTTAACCTGAATGGGATTG
TCATAAAGGGAAAATAAATTTATTTTCGCATTGACAATTTCAATGAGCTT
TCACTTCTCAATGTAACTTGGGAAAATAAACTTTCCACATTAAGAAAACG
TCACATTGACGCTGTTTTCTTGGGTTGAGCTGAGAAATTTAACATACCCG
TTTAAAGTTTTTAACTAATGCAATTTCGCGTCCAAAGTGTTTTGCATGTG
ACATCAGTCCTTTCGAGCTGAAAAATTTAACCCATGAATTTGTTGTCTCC
CCTTTTCTTTAGGTGTTCTGAGATGTATCTATTTTTTTCGATTTCAACAG
AACCTTAACCGACAATCCAACAAAATTTTTAACGAATTTGTTGAACAATA
TTGCGTTGAAAACAAAATCGACCAGATGAAACTCCTCGAAAACGAAAGTG
AACGTAAAGAAATGGTAATCGAAAACAAAGTCAAAAATCTTCGTCGTGAA
AAAATGGCATGCGCAATGAAAATCGGAGCATTCGATATGGAGAAATTCCC
AAGAAGTAAAGAAGCTCTGGCATTTATGACCATGTATGATTCACGCGAAA
CAAGAAATCTTTTACCAAAGAAATTTCTCGCTTTATGTGGCATCAAGCGA
GAAGCTCTATGTAGAGATAAAATGAAGGAACTGGAAGATCCAAATATGAT
GTCAAAACGCGTAAGAATTTATTTTGTTATCTTGTTCACGACAACAAAAT
TTAAAATACTATGTGAGCTATGAAGGCTATTCTATTGTTTTTAACAAGTT
CCAAGGGAGGAAGTACAAGTTGAACTAACGATGAGAGATAGTGAATTTTT
ACTGAGGCTCAGCTTTAATATACTTACTCTAACTCATTTATTTTAACCCT
TTTAAGTTAAAATCAACATTTTCTTACCCATTTCTGAAAGATGAGATTGT
GAACTGTACTTAATTTATTGTAAGCTTGGCCCAATATTAAGCTTCATGTT
GTCATAAAATTATTCATATGAAAAACGGGTATATTGTTCTCTTTTGATAA
CTTCAGATGGTCAGATGTGAATCGTACAAGTTCTATAACGAACTGATAGA
AGATTATTGTAATAAGCATGGCATTGACATTACATTGTTCACTGAAAATA
GTATGAACAATAAGCGAAAAATTCCNCAAGAGTTATTACCTTAAAGGAAG
AAAAAAAAATTTGGTGGATTTGGCCAGAATCCGCCAAATTAAACTTTTTA
AAAATATGATCTCTTTTAAAGGTGTTTTTGCATTTTATTTGCTGTTTTTA
CACCATTTTAAGGATAAATTTTTCAGCAAACGCCAAATTAAATTCCCTCT
AAAAAAATTTTTTTTTTCCTGCCAAAATTTCTTTCTTTAAGGTATCAACA
AGAATTATTATTTGGTTTTGTACCTGATAACGTTATTGTTGCCTTTCAAC
AAGTTGAGTAACGTAAATTCGTGAGTGATTTAAAGAAAGCACAAATGACT
TTACTGAAATCTGAAAGACAAAATATTGCAAATGTAAGACTTTTTATGGC
ACCAATCATTTCAGTTTTTGCAATATTGCCTCTTAGAAATTTTTCTTTAG
TCGGTTTTGTTTCGAATATCGCATGCGAATGAAGCATTTCGTAGTAACCT
TCGTTAGATTTAATTGTGTTTTGTAATTTTGTAGTTTTTGGTTATTTTTG
TGTTATTTTTTGTAAATAGATTTATATTTTTTGTTTCCAATTCTAATTTT
TAGTCTCGCTGGTTCAAGCGTGCAACTTACATATATTCATTGGTTATCAT
CTCCAGGGTTGGGTACAAATTCGGTCGGTTTACCTGTTTTTCTCTACAGT
AAAAATGTTTCTTTTTAATTCCGGCAAATATTTTGATCTTCTTGCTAAAT
ACCTCCAATCTGGTGAATCTGTTGAGCCTAAATGAATTCATTTCCAAACA
AGAATGCATGTAATTTTTTTCTTTTTTAGTTTTAAAGAAAAAGTTTAAAA
ATTCGACAAAATATGGAAAAGATAATAAACCTTAACAACGAGCAAATTAA
TCAATCGAAGGTATCCCTCGAAGATGTTAAGAATGAATCCAACTGTGGTG
AATCTGGAAAAATCTTGCGAAGTCAACGTCCTCTTCAAACAATGGGTTGG
TACCAACCTCATGAGTTAGCTGGTATTGTTCCTGATGACGTTGTGAGGGC
TTTCCAACATGAACAAATACTTTCTAGAAGAGAGTGTAGAAAGAAAAGAT
ATCCTAATGTTCCAGGTGCAAACAGAAAAGAGCGAAAACAGGTATTGGAA
GTTAATTCTTTAAGATATTTTGTCTTTTCGAAGTAGAGAGTCTGTTAACT
TGAAGGTTTTATTTTTACATAATTGTTCCCGTTTCATACCAGATACATAT
TTTATATCAGGACAGTGTTTTCTTATTGTTATATTATGCTGATATAAGCA
AAAAATGTTTTTCTTTTCCTCTTTCTGACCAATCTTGCTCCACATCTGTG
TCAATCCATTGAATCCAATGTAAAAAAGCTTGTGAATTGAAATTGATGAG
TAAGCAGACTCCTATTTAAAAACAAAACCTTTAACCTGAATGGGATTGTC
ATAAAGGGAAAATAAATTTATTTTCGCATTGACAATTTCAATGAGCTTTC
ACTTCTCAATGTAACTTGGGAAAATAAACTTTCCACATTAAGAAAACGTC
ACATTGACGCTGTTTTCTTGGGTTGAGCTGAGAAATTTAACATACCCGTT
TAAAGTTTTTAACTAATGCAATTTCGCGTCCAAAGTGTTTTGCATGTGAC
ATCAGTCCTTTCGAGCTGAAAAATTTAACCCATGAATTTGTTGTCTCCCC
TTTTCTTTAGGTGTTCTGAGATGTATCTATTTTTTTCGATTTCAACAGAA
CCTTAACCGACAATCCAACAAAATTTTTAACGAATTTGTTGAACAATATT
GCGTTGAAAACAAAATCGACCAGATGAAACTCCTCGAAAACGAAAGTGAA
CGTAAAGAAATGGTAATCGAAAACAAAGTCAAAAATCTTCGTCGTGAAAA
AATGGCATGCGCAATGAAAATCGGAGCATTCGATATGGAGAAATTCCCAA
GAAGTAAAGAAGCTCTGGCATTTATGACCATGTATGATTCACGCGAAACA
AGAAATCTTTTACCAAAGAAATTTCTCGCTTTATGTGGCATCAAGCGAGA
AGCTCTATGTAGAGATAAAATGAAGGAACTGGAAGATCCAAATATGATGT
CAAAACGCGTAAGAATTTATTTTGTTATCTTGTTCACGACAACAAAATTT
AAAATACTATGTGAGCTATGAAGGCTATTCTATTGTTTTTAACAAGTTCC
AAGGGAGGAAGTACAAGTTGAACTAACGATGAGAGATAGTGAATTTTTAC
TGAGGCTCAGCTTTAATATACTTACTCTAACTCATTTATTTTAACCCTTT
TAAGTTAAAATCAACATTTTCTTACCCATTTCTGAAAGATGAGATTGTGA
ACTGTACTTAATTTATTGTAAGCTTGGCCCAATATTAAGCTTCATGTTGT
CATAAAATTATTCATATGAAAAACGGGTATATTGTTCTCTTTTGATAACT
TCAGATGGTCAGATGTGAATCGTACAAGTTCTATAACGAACTGATAGAAG
ATTATTGTAATAAGCATGGCATTGACATTACATTGTTCACTGAAAATAGT
ATGAACAATAAGCGAAAAATTCCGAAGGAACGAATGGATAAACTACGAAA
CGCTAAAAAGAAAAATCAGAAATTCAAAGCCAATAACAGAAAAATGAAAC
CTTCCCTTTCCAAGTCTTCCGAGGAGTCTCCAAAACGTTATTGGAACCAA
TCAAAATCGAGATCAAACCAAGAAGCTGTTACCGCTTCGCCATCAACCTC
TATTTTAGCGAATTACTCTGAAAGACGTTTCTGGACTACTGACAGATCTC
AAACCAAGATGGAATCAACAAATTTGAATTCAAATTCACCGAAGGAAAGG
CATGAAGAAAATTTTGTGATACCTGAATCACAAGCTTACTCCACGGAATC
TCACCAGCCATCAATCCTGGATCAACAAAAGCTCATTGTACAAACACGTC
CAAATTGTTCAACACTCCAAGGGCGTAGAGTGCATTCTCAACATTTTCAT
AAATCAAACCAACATTTTAATCATATCCCTCCCCAAAATACTGGTTTAAA
TCCAAATCTAAACACCGCTCAAATGCGACAAAGTGAAATTCGTTATGGGC
CAAGATCCCATCGAGGGATCAACCAGGTTGGACCTCCAAGGCTAGCATTG
AACCAAGTGAAGCAATCATTGACCGCTGTGAGTCATCAACCAATTAGACT
ATTTCCTAAAGCTCCTAGATTCGCATCAAATCCTAAATGTGGTCTTGTAT
CGGTGTTTCCTAGAATGGATACTCCTCCAAGGCTTACAGTTGTTCCACGA
GCGGGGTCTAGAAATATACATCCCGCAGGATTCGAAGGTGTTGGCATTTC
ACGCCCATTTTTCTCACCAAGGTTTCAACAAGTACGACCGCTTACAATTC
AGAGATATCCACACCATCAAGTCCAGCGTGCCCACAGCTTCTCAAGAGAG
AGATGGGATAAGTACAGTTTCAATCAATATTGAAAATTGACGGATGCGTT
CATTGGTCAAATCGACAGTTGAAATTCGTTTTTATTGTTTTTAGTACATC
AATTGTTTTGGATACTTTTTTCTTTTGTTTGATTTGTTTCCATTTTCTAT
TTTCAGTTTGTATTTTTTCTATAGAGAATCATATCCAATTCAGAACTTAG
ACCTAATCGATGAATTTATTATTTTCTTTCTGAAGGGTTTGTTATCTACA
AGAAACAAAAAATAAGTACTTTGTGCTTATTCTTGGTCAAAAAATTTAGT
ATTTTGTTAATAAACAGGTTTTTACTCATACAAATCCAATTTATTTCAAC
ATACATATGTGAAGAAATAAGAATTGCTGTCCAACTATATTCACTCAGGA
GATTTGGCTGGCAGAGCAGGTGTATGCATTTGGTCCTTATTGGGACTAAT
AAGCACTGCATACTACACCCTGGCTGGCCAGATCTCTAAACCATAAAATC
ACTTGTTTGATCACTGAACTGATCTAACTGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGTTTTCTTATTGTTATATTATGCTGATATAAGCAAAAAATGTTTT
TCTTTTCCTTTTTCTGACCAATCTTGCTCCACATCTGTGTCAATCCAATG
TAAAACAGCTTGTGAATTGAAATTGATGAGTAAGCAGACTCCTATTTAAA
AACAAAACCTTTAACCTGAATGGGATTGTCAAAAAGGGAAAATAAATTTA
TTTTCGCATTGACAATTTCAATGAGCTTTCACTTCTCAATGTAACTTGGG
AAAATAAACTTTTCACATTAAGAAAACGTCACATTGACGCTGTTTTCTTG
GGTTGAGCTGAGAAATTTAACATACCCGTTTAAAGCTTTTAACTAATGCA
ATTTCCAAAGTGTTTTGCATGTGACAACAGTCCTTTCGAGCTGAAAAATT
CAACCCAGGGTTTTGTTGTCTCCCCTTCTCCTCAGGTGTTTTGAGATGTC
TCTATTTTTTCGATTTCAACAGAACCTTAACCGACAATCCAACAAAAATT
TTAACGAATTTGCTGAACAATATTGTGTTGAAAACAACATCGATCCGATG
AAACTTCTCGAAAACAAAAGTGAAAGTAAAGAAATGGTAATCGAAAACAA
AGCCAAAAATCCTCGTCGTGAAAAAATGGCATGTGCAATGAAAATCGGAT
CATTCAATATGGAGAAATTCCCAAGAAGTAAAGAAGCTCTGGCATTTATG
ACCATGTATGATTCACGCGAAACAAGAAATCTTTTACCAAAGAAATTTCT
CGCTTTATGTGGCATCAAGCGAGAAGCTCTATGTAGAGATAAAATGAAGG
AGTTGGAAGATCCAAATATGATGTCAAAACGCGTAAGAATTTATTTTAAA
ATTTTCAAAATCTTGTTCCCGACAACAAAATTTAAAATACTATGTGAGCT
ATGAAGGCTATTGTTTTTAACAAGTTCTAAGGGAGGAAGTACAAGTTGAA
CTAACGATGAGAGGTAGTGAATTTTTACTGAGGCTCAGCTTTAATATACT
TACTCTAATTCATTTATTGGTCAGCCTAAGCTGAGCATTCAAATAGGTAA
AATTTTCTTCTTCTTCCATCATCATCATAAGACGGCAAAAAAAAAATCCG
ATTTCGGATTATTTTCGGAAAACAAGTTATCGGTAAAACTTTGGCGCGAA
AAATATTTTCTATTGGAAGAGAAAAGAAACACGTCACTTCATTTATTATG
ATTTGCGCATAATATGAGAATAATAAAAGAACACTATATAAAAGAAGAAA
GTAGTAAAAATGAATTTTTTTTTGTTTATTCATTAAATTGAAAGAAGCTA
ATGCATTGTAAATAAATAGACAGTATAAAAGAAAGTTTTTGATGATTGGT
TTTGAGGCTTTCTTGTCTGGAGAGAGTTTTTGTGTGTAGGAAGCAGAGAA
ATGAACGTCAAAGTGTGGCGTAACATTAACAGAAACTTGGAATCATCATA
ACTTTTGATTGAGTTATCGAAACTGAACGGAATTTTCGACGCAGCTTCCT
CAATATAAAATGCACTCATTCACATTATACTAGGGGCCTACTTAGTTCAA
CACGTCATTTAAATCAATCTGACAAATGTGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACCATAAGGGT
ACCTTTTTTCAGGCCTGAAAAGTCTCTCAGAGGGGTACAAATTCATAAGT
TAGTCTCTAAAAGGGTCCCAAAATCACGAAAATCGAAAATATTTCTCTAA
AAAGGCCTAAAAAGGACACGATTTCCAGAAGTTTTGACCAAAATTTGGTG
AAAATCAAACCGAAATTTGGAAAAAATCTACCAAAATTTTAGGAAAGTCT
CTCAAAGGATCCCAAAATCAAAATTTTGTCTCTCAAAGGGTCGACTTTCT
GCTCGGACACCCCGTCACCTCGTAAACCTAGTACCCCCCAAAGGTGAAAT
TCCAACATCTATCCCATGTCCACTTTTGGACAAATCCAACTTTGTGTTAA
ACATTTTTTCGTCTGAAGTTTCAGCCAAAATGAGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTTGACTTTAACAACGAATTAGGTTT
CTTGATTGTACTTCCTTCTAATCGTCGTTTTAAGCTTATTGGGCTGACCT
TCCAGCGCAGCTGGTTTATTTTAACTTAAAATCAACATTTTCTTATCCAT
TTCAGAAAGATGAGATTGTGAACTGTTTAATTTATTGTAAGCTTTGGCCC
AATATTAACCCTATTTTTATCAGGGGGGGTGTTTTCCACCAGGCTGGCAC
TCTTTTGCTAATAGCTCACTGAAAATTTTTTTTAACACTCTGAAAGTTTT
TGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTAAATTTAGCATAACTTTAGATCTAGGCAT
CCAACTGACTTCAAATTTTGACAGGTTTTAGGTATCAATGATAAATTTTA
AAAAATATTTTAAAAATTTTCAAAAAGTGCTGACGTCATCAAAAATGACG
TCATTGTTTTTTTAAAAATTTACTCATTTTCTGCATAGATTTTAAACCTC
GATTTTATTAGTATGTTAAAAACCAGCAAATATGTTAAACATATTCTTTT
TGGCTTTTAGAAATTCAAAACAGAATTGAAAAATCTCCATTCGTTCAACT
TTAACTGCTATTTTATTGAATAGTACTTTTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCCCCCCCCCCCTTGAGAATACAAAATCCGAAAAAG
CCTGATAATAATAGGGTTAAGCTTCGTGTTGTCATGAAATTGTTCATATG
AAAAACGGTTGTATTTGTTCTCTTTTGATAACTTCAGATGGTCAGATGTG
AATCGTACAAGTTCTATAACGAACTGATAGAAGATTATTGTAATAAGCA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00029463TCONS_00029463Clytia hemisphaericatranscript
TCONS_00029462TCONS_00029462Clytia hemisphaericatranscript
TCONS_00029461TCONS_00029461Clytia hemisphaericatranscript
TCONS_00029460TCONS_00029460Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00029461-proteinTCONS_00029461-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000748supercontigsc0000748:146327..155575 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31	1.04	0.5	0.25	0.97	0.9	0.43	0.7	0.08	0.24	0.33	0.18	0.37	0.14	0.03	0.41	0.22	0.66	0	0.07	0.75	0.19	0.26	0.79	2.45	4.48	0.18	0.13	0.42	0.42