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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029461 ID=TCONS_00029461|Name=TCONS_00029461|organism=Clytia hemisphaerica|type=transcript|length=1790bp aattcgACAAAATATGGAAAAGATAATAAACCTTAACAACGAGCAAATTA ATCAATCGAAGGTATCCCTCGAAGATGTTAAGAATGAATCCAACTGTGGT GAATCTGGAAAAATCTTGCGAAGTCAACGTCCTCTTCAAACAATGGGTTG GTACCAACCTCATGAGTTAGCTGGTATTGTTCCTGATGACGTTGTGAGGG CTTTCCAACATGAACAAATACTTTCTAGAAGAGAGTGTAGAAAGAAAAGA TATCCTAATGTTCCAGGTGCAAACAGAAAAGAGCGAAAACAGAACCTTAA CCGACAatccaacaaaatttttaacGAATTTGTTGAACAATATTGCGTTG AAAACAAAATCGACCAGATGAAACtcctcgaaaacgaaagtgaacgTAAA GAAATGGTAATcgaaaacaaagtcaaaaatCTTCGTCGTGAAAAAATGGC ATGCGCAATGAAAATCGGAGCATTCGATATGGAGAAATTCCCAAGAAGTA AAGAAGCTCTGGCATTTATGACCATGTATGATTCACGCGAAACAAGAAAT CTTTTACCAAAGAAATTTCTCGCTTTATGTGGCATCAAGCGAGAAGCTCT ATGTAGAGATAAAATGAAGGAACTGGAAGATCCAAATATGATGTCAAAAC GCATGGTCAGATGTGAATCGTACAAGTTCTATAACGAACTGATAGAAGAT TATTGTAATAAGCATGGCATTGACATTACATTGTTCACTGAAAATAGTAT GAACAATAAGCGAAAAATTCCGAAGGAACGAATGGATAAACTACGAAacg ctaaaaagaaaaatcagaaattcaAAGCCAATAACAGAAAAATGAAACCT TCCCTTTCCAAGTCTTCCGAGGAGTCTCCAAAACGTTATTGGAACCAATC AAAATCGAGATCAAACCAAGAAGCTGTTACCGCTTCGCCATCAACCTCTA TTTTAGCGAATTACTCTGAAAGACGTTTCTGGACTACTGACAGATCTCAA ACCAAGATGGAATCAACAAATTTGAATTCAAATTCACCGAAGGAAAGGCa tgaagaaaattttgtgatACCTGAATCACAAGCTTACTCCACGGAATCTC ACCAGCCATCAATCCTGGATCAACAAAAGCTCATTGTACAAACACGTCCA AATTGTTCAACACTCCAAGGGCGTAGAGTGCATTCTCAACATTTTCATAA ATCAAACCAACATTTTAATCATATCCctccccaaaatactggtttaAATC CAAATCTAAACACCGCTCAAATGCGACAAAGTGAAATTCGTTATGGGCCA AGATCCCATCGAGGGATCAACCAGGTTGGACCTCCAAGGCTAGCATTGAA CCAAGTGAAGCAATCATTGACCGCTGTGAGTCATCAACCAATTAGACTAT TTCCTAAAGCTCCTAGATTCGCATCAAATCCTAAATGTGGTCTTGTATCG GTGTTTCCTAGAATGGATACTCCTCCAAGGCTTACAGTTGTTCCACGAGC GGGGTCTAGAAATATACATCCCGCAGGATTCGAAGGTGTTGGCATTTCAC GCCCATTTTTCTCACCAAGGTTTCAACAAGTACGACCGCTTACAATTCAG AGATATCCACACCATCAAGTCCAGCGTGCCCACAGCTTCTCAAGAGAGAG ATGGGATAAGTACAGTTTCAatcaatattgaaaattgacggATGCGTTCA TTGGTCAAATCGACAGTTGAAAttcgtttttattgtttttagtACATCAA TTGTTTTGgatacttttttcttttgtttgatttgtttcca Run BLAST on NCBI protein sequence of TCONS_00029461-protein >TCONS_00029461-protein ID=TCONS_00029461-protein|Name=TCONS_00029461-protein|organism=Clytia hemisphaerica|type=polypeptide|length=559bp
IRQNMEKIINLNNEQINQSKVSLEDVKNESNCGESGKILRSQRPLQTMGW YQPHELAGIVPDDVVRAFQHEQILSRRECRKKRYPNVPGANRKERKQNLN RQSNKIFNEFVEQYCVENKIDQMKLLENESERKEMVIENKVKNLRREKMA CAMKIGAFDMEKFPRSKEALAFMTMYDSRETRNLLPKKFLALCGIKREAL CRDKMKELEDPNMMSKRMVRCESYKFYNELIEDYCNKHGIDITLFTENSM NNKRKIPKERMDKLRNAKKKNQKFKANNRKMKPSLSKSSEESPKRYWNQS KSRSNQEAVTASPSTSILANYSERRFWTTDRSQTKMESTNLNSNSPKERH EENFVIPESQAYSTESHQPSILDQQKLIVQTRPNCSTLQGRRVHSQHFHK SNQHFNHIPPQNTGLNPNLNTAQMRQSEIRYGPRSHRGINQVGPPRLALN QVKQSLTAVSHQPIRLFPKAPRFASNPKCGLVSVFPRMDTPPRLTVVPRA GSRNIHPAGFEGVGISRPFFSPRFQQVRPLTIQRYPHHQVQRAHSFSRER WDKYSFNQY Run BLAST on NCBI transcript from alignment at sc0000748:150484..153226- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029461 ID=TCONS_00029461|Name=TCONS_00029461|organism=Clytia hemisphaerica|type=transcript|length=2743bp|location=Sequence derived from alignment at sc0000748:150484..153226- (Clytia hemisphaerica) AATTCGACAAAATATGGAAAAGATAATAAACCTTAACAACGAGCAAATTA
ATCAATCGAAGGTATCCCTCGAAGATGTTAAGAATGAATCCAACTGTGGT
GAATCTGGAAAAATCTTGCGAAGTCAACGTCCTCTTCAAACAATGGGTTG
GTACCAACCTCATGAGTTAGCTGGTATTGTTCCTGATGACGTTGTGAGGG
CTTTCCAACATGAACAAATACTTTCTAGAAGAGAGTGTAGAAAGAAAAGA
TATCCTAATGTTCCAGGTGCAAACAGAAAAGAGCGAAAACAGGTATTGGA
AGTTAATTCTTTAAGATATTTTGTCTTTTCGAAGTAGAGAGTCTGTTAAC
TTGAAGGTTTTATTTTTACATAATTGTTCCCGTTTCATACCAGATACATA
TTTTATATCAGGACAGTGTTTTCTTATTGTTATATTATGCTGATATAAGC
AAAAAATGTTTTTCTTTTCCTCTTTCTGACCAATCTTGCTCCACATCTGT
GTCAATCCATTGAATCCAATGTAAAAAAGCTTGTGAATTGAAATTGATGA
GTAAGCAGACTCCTATTTAAAAACAAAACCTTTAACCTGAATGGGATTGT
CATAAAGGGAAAATAAATTTATTTTCGCATTGACAATTTCAATGAGCTTT
CACTTCTCAATGTAACTTGGGAAAATAAACTTTCCACATTAAGAAAACGT
CACATTGACGCTGTTTTCTTGGGTTGAGCTGAGAAATTTAACATACCCGT
TTAAAGTTTTTAACTAATGCAATTTCGCGTCCAAAGTGTTTTGCATGTGA
CATCAGTCCTTTCGAGCTGAAAAATTTAACCCATGAATTTGTTGTCTCCC
CTTTTCTTTAGGTGTTCTGAGATGTATCTATTTTTTTCGATTTCAACAGA
ACCTTAACCGACAATCCAACAAAATTTTTAACGAATTTGTTGAACAATAT
TGCGTTGAAAACAAAATCGACCAGATGAAACTCCTCGAAAACGAAAGTGA
ACGTAAAGAAATGGTAATCGAAAACAAAGTCAAAAATCTTCGTCGTGAAA
AAATGGCATGCGCAATGAAAATCGGAGCATTCGATATGGAGAAATTCCCA
AGAAGTAAAGAAGCTCTGGCATTTATGACCATGTATGATTCACGCGAAAC
AAGAAATCTTTTACCAAAGAAATTTCTCGCTTTATGTGGCATCAAGCGAG
AAGCTCTATGTAGAGATAAAATGAAGGAACTGGAAGATCCAAATATGATG
TCAAAACGCGTAAGAATTTATTTTGTTATCTTGTTCACGACAACAAAATT
TAAAATACTATGTGAGCTATGAAGGCTATTCTATTGTTTTTAACAAGTTC
CAAGGGAGGAAGTACAAGTTGAACTAACGATGAGAGATAGTGAATTTTTA
CTGAGGCTCAGCTTTAATATACTTACTCTAACTCATTTATTTTAACCCTT
TTAAGTTAAAATCAACATTTTCTTACCCATTTCTGAAAGATGAGATTGTG
AACTGTACTTAATTTATTGTAAGCTTGGCCCAATATTAAGCTTCATGTTG
TCATAAAATTATTCATATGAAAAACGGGTATATTGTTCTCTTTTGATAAC
TTCAGATGGTCAGATGTGAATCGTACAAGTTCTATAACGAACTGATAGAA
GATTATTGTAATAAGCATGGCATTGACATTACATTGTTCACTGAAAATAG
TATGAACAATAAGCGAAAAATTCCGAAGGAACGAATGGATAAACTACGAA
ACGCTAAAAAGAAAAATCAGAAATTCAAAGCCAATAACAGAAAAATGAAA
CCTTCCCTTTCCAAGTCTTCCGAGGAGTCTCCAAAACGTTATTGGAACCA
ATCAAAATCGAGATCAAACCAAGAAGCTGTTACCGCTTCGCCATCAACCT
CTATTTTAGCGAATTACTCTGAAAGACGTTTCTGGACTACTGACAGATCT
CAAACCAAGATGGAATCAACAAATTTGAATTCAAATTCACCGAAGGAAAG
GCATGAAGAAAATTTTGTGATACCTGAATCACAAGCTTACTCCACGGAAT
CTCACCAGCCATCAATCCTGGATCAACAAAAGCTCATTGTACAAACACGT
CCAAATTGTTCAACACTCCAAGGGCGTAGAGTGCATTCTCAACATTTTCA
TAAATCAAACCAACATTTTAATCATATCCCTCCCCAAAATACTGGTTTAA
ATCCAAATCTAAACACCGCTCAAATGCGACAAAGTGAAATTCGTTATGGG
CCAAGATCCCATCGAGGGATCAACCAGGTTGGACCTCCAAGGCTAGCATT
GAACCAAGTGAAGCAATCATTGACCGCTGTGAGTCATCAACCAATTAGAC
TATTTCCTAAAGCTCCTAGATTCGCATCAAATCCTAAATGTGGTCTTGTA
TCGGTGTTTCCTAGAATGGATACTCCTCCAAGGCTTACAGTTGTTCCACG
AGCGGGGTCTAGAAATATACATCCCGCAGGATTCGAAGGTGTTGGCATTT
CACGCCCATTTTTCTCACCAAGGTTTCAACAAGTACGACCGCTTACAATT
CAGAGATATCCACACCATCAAGTCCAGCGTGCCCACAGCTTCTCAAGAGA
GAGATGGGATAAGTACAGTTTCAATCAATATTGAAAATTGACGGATGCGT
TCATTGGTCAAATCGACAGTTGAAATTCGTTTTTATTGTTTTTAGTACAT
CAATTGTTTTGGATACTTTTTTCTTTTGTTTGATTTGTTTCCA Coding sequence (CDS) from alignment at sc0000748:150484..153226- >TCONS_00029461 ID=TCONS_00029461|Name=TCONS_00029461|organism=Clytia hemisphaerica|type=CDS|length=5040bp|location=Sequence derived from alignment at sc0000748:150484..153226- (Clytia hemisphaerica) ATGGTCAGATGTGAATCGTACAAGTTCTATAACGAACTGATAGAAGATTA TTGTAATAAGCATGGCATTGACATTACATTGTTCACTGAAAATAGTATGA ACAATAAGCGAAAAATTCCGAAGGAACGAATGGATAAACTACGAAACGCT AAAAAGAAAAATCAGAAATTCAAAGCCAATAACAGAAAAATGAAACCTTC CCTTTCCAAGTCTTCCGAGGAGTCTCCAAAACGTTATTGGAACCAATCAA AATCGAGATCAAACCAAGAAGCTGTTACCGCTTCGCCATCAACCTCTATT TTAGCGAATTACTCTGAAAGACGTTTCTGGACTACTGACAGATCTCAAAC CAAGATGGAATCAACAAATTTGAATTCAAATTCACCGAAGGAAAGGCATG AAGAAAATTTTGTGATACCTGAATCACAAGCTTACTCCACGGAATCTCAC CAGCCATCAATCCTGGATCAACAAAAGCTCATTGTACAAACACGTCCAAA TTGTTCAACACTCCAAGGGCGTAGAGTGCATTCTCAACATTTTCATAAAT CAAACCAACATTTTAATCATATCCCTCCCCAAAATACTGGTTTAAATCCA AATCTAAACACCGCTCAAATGCGACAAAGTGAAATTCGTTATGGGCCAAG ATCCCATCGAGGGATCAACCAGGTTGGACCTCCAAGGCTAGCATTGAACC AAGTGAAGCAATCATTGACCGCTGTGAGTCATCAACCAATTAGACTATTT CCTAAAGCTCCTAGATTCGCATCAAATCCTAAATGTGGTCTTGTATCGGT GTTTCCTAGAATGGATACTCCTCCAAGGCTTACAGTTGTTCCACGAGCGG GGTCTAGAAATATACATCCCGCAGGATTCGAAGGTGTTGGCATTTCACGC CCATTTTTCTCACCAAGGTTTCAACAAGTACGACCGCTTACAATTCAGAG ATATCCACACCATCAAGTCCAGCGTGCCCACAGCTTCTCAAGAGAGAGAT GGGATAAGTACAGTTTCAATCAATATTGAAACCTTAACCGACAATCCAAC AAAATTTTTAACGAATTTGTTGAACAATATTGCGTTGAAAACAAAATCGA CCAGATGAAACTCCTCGAAAACGAAAGTGAACGTAAAGAAATGGTAATCG AAAACAAAGTCAAAAATCTTCGTCGTGAAAAAATGGCATGCGCAATGAAA ATCGGAGCATTCGATATGGAGAAATTCCCAAGAAGTAAAGAAGCTCTGGC ATTTATGACCATGTATGATTCACGCGAAACAAGAAATCTTTTACCAAAGA AATTTCTCGCTTTATGTGGCATCAAGCGAGAAGCTCTATGTAGAGATAAA ATGAAGGAACTGGAAGATCCAAATATGATGTCAAAACGCATTCGACAAAA TATGGAAAAGATAATAAACCTTAACAACGAGCAAATTAATCAATCGAAGG TATCCCTCGAAGATGTTAAGAATGAATCCAACTGTGGTGAATCTGGAAAA ATCTTGCGAAGTCAACGTCCTCTTCAAACAATGGGTTGGTACCAACCTCA TGAGTTAGCTGGTATTGTTCCTGATGACGTTGTGAGGGCTTTCCAACATG AACAAATACTTTCTAGAAGAGAGTGTAGAAAGAAAAGATATCCTAATGTT CCAGGTGCAAACAGAAAAGAGCGAAAACAGATGGTCAGATGTGAATCGTA CAAGTTCTATAACGAACTGATAGAAGATTATTGTAATAAGCATGGCATTG ACATTACATTGTTCACTGAAAATAGTATGAACAATAAGCGAAAAATTCCG AAGGAACGAATGGATAAACTACGAAACGCTAAAAAGAAAAATCAGAAATT CAAAGCCAATAACAGAAAAATGAAACCTTCCCTTTCCAAGTCTTCCGAGG AGTCTCCAAAACGTTATTGGAACCAATCAAAATCGAGATCAAACCAAGAA GCTGTTACCGCTTCGCCATCAACCTCTATTTTAGCGAATTACTCTGAAAG ACGTTTCTGGACTACTGACAGATCTCAAACCAAGATGGAATCAACAAATT TGAATTCAAATTCACCGAAGGAAAGGCATGAAGAAAATTTTGTGATACCT GAATCACAAGCTTACTCCACGGAATCTCACCAGCCATCAATCCTGGATCA ACAAAAGCTCATTGTACAAACACGTCCAAATTGTTCAACACTCCAAGGGC GTAGAGTGCATTCTCAACATTTTCATAAATCAAACCAACATTTTAATCAT ATCCCTCCCCAAAATACTGGTTTAAATCCAAATCTAAACACCGCTCAAAT GCGACAAAGTGAAATTCGTTATGGGCCAAGATCCCATCGAGGGATCAACC AGGTTGGACCTCCAAGGCTAGCATTGAACCAAGTGAAGCAATCATTGACC GCTGTGAGTCATCAACCAATTAGACTATTTCCTAAAGCTCCTAGATTCGC ATCAAATCCTAAATGTGGTCTTGTATCGGTGTTTCCTAGAATGGATACTC CTCCAAGGCTTACAGTTGTTCCACGAGCGGGGTCTAGAAATATACATCCC GCAGGATTCGAAGGTGTTGGCATTTCACGCCCATTTTTCTCACCAAGGTT TCAACAAGTACGACCGCTTACAATTCAGAGATATCCACACCATCAAGTCC AGCGTGCCCACAGCTTCTCAAGAGAGAGATGGGATAAGTACAGTTTCAAT CAATATTGAAACCTTAACCGACAATCCAACAAAATTTTTAACGAATTTGT TGAACAATATTGCGTTGAAAACAAAATCGACCAGATGAAACTCCTCGAAA ACGAAAGTGAACGTAAAGAAATGGTAATCGAAAACAAAGTCAAAAATCTT CGTCGTGAAAAAATGGCATGCGCAATGAAAATCGGAGCATTCGATATGGA GAAATTCCCAAGAAGTAAAGAAGCTCTGGCATTTATGACCATGTATGATT CACGCGAAACAAGAAATCTTTTACCAAAGAAATTTCTCGCTTTATGTGGC ATCAAGCGAGAAGCTCTATGTAGAGATAAAATGAAGGAACTGGAAGATCC AAATATGATGTCAAAACGCATTCGACAAAATATGGAAAAGATAATAAACC TTAACAACGAGCAAATTAATCAATCGAAGGTATCCCTCGAAGATGTTAAG AATGAATCCAACTGTGGTGAATCTGGAAAAATCTTGCGAAGTCAACGTCC TCTTCAAACAATGGGTTGGTACCAACCTCATGAGTTAGCTGGTATTGTTC CTGATGACGTTGTGAGGGCTTTCCAACATGAACAAATACTTTCTAGAAGA GAGTGTAGAAAGAAAAGATATCCTAATGTTCCAGGTGCAAACAGAAAAGA GCGAAAACAGATGGTCAGATGTGAATCGTACAAGTTCTATAACGAACTGA TAGAAGATTATTGTAATAAGCATGGCATTGACATTACATTGTTCACTGAA AATAGTATGAACAATAAGCGAAAAATTCCGAAGGAACGAATGGATAAACT ACGAAACGCTAAAAAGAAAAATCAGAAATTCAAAGCCAATAACAGAAAAA TGAAACCTTCCCTTTCCAAGTCTTCCGAGGAGTCTCCAAAACGTTATTGG AACCAATCAAAATCGAGATCAAACCAAGAAGCTGTTACCGCTTCGCCATC AACCTCTATTTTAGCGAATTACTCTGAAAGACGTTTCTGGACTACTGACA GATCTCAAACCAAGATGGAATCAACAAATTTGAATTCAAATTCACCGAAG GAAAGGCATGAAGAAAATTTTGTGATACCTGAATCACAAGCTTACTCCAC GGAATCTCACCAGCCATCAATCCTGGATCAACAAAAGCTCATTGTACAAA CACGTCCAAATTGTTCAACACTCCAAGGGCGTAGAGTGCATTCTCAACAT TTTCATAAATCAAACCAACATTTTAATCATATCCCTCCCCAAAATACTGG TTTAAATCCAAATCTAAACACCGCTCAAATGCGACAAAGTGAAATTCGTT ATGGGCCAAGATCCCATCGAGGGATCAACCAGGTTGGACCTCCAAGGCTA GCATTGAACCAAGTGAAGCAATCATTGACCGCTGTGAGTCATCAACCAAT TAGACTATTTCCTAAAGCTCCTAGATTCGCATCAAATCCTAAATGTGGTC TTGTATCGGTGTTTCCTAGAATGGATACTCCTCCAAGGCTTACAGTTGTT CCACGAGCGGGGTCTAGAAATATACATCCCGCAGGATTCGAAGGTGTTGG CATTTCACGCCCATTTTTCTCACCAAGGTTTCAACAAGTACGACCGCTTA CAATTCAGAGATATCCACACCATCAAGTCCAGCGTGCCCACAGCTTCTCA AGAGAGAGATGGGATAAGTACAGTTTCAATCAATATTGAAACCTTAACCG ACAATCCAACAAAATTTTTAACGAATTTGTTGAACAATATTGCGTTGAAA ACAAAATCGACCAGATGAAACTCCTCGAAAACGAAAGTGAACGTAAAGAA ATGGTAATCGAAAACAAAGTCAAAAATCTTCGTCGTGAAAAAATGGCATG CGCAATGAAAATCGGAGCATTCGATATGGAGAAATTCCCAAGAAGTAAAG AAGCTCTGGCATTTATGACCATGTATGATTCACGCGAAACAAGAAATCTT TTACCAAAGAAATTTCTCGCTTTATGTGGCATCAAGCGAGAAGCTCTATG TAGAGATAAAATGAAGGAACTGGAAGATCCAAATATGATGTCAAAACGCA TTCGACAAAATATGGAAAAGATAATAAACCTTAACAACGAGCAAATTAAT CAATCGAAGGTATCCCTCGAAGATGTTAAGAATGAATCCAACTGTGGTGA ATCTGGAAAAATCTTGCGAAGTCAACGTCCTCTTCAAACAATGGGTTGGT ACCAACCTCATGAGTTAGCTGGTATTGTTCCTGATGACGTTGTGAGGGCT TTCCAACATGAACAAATACTTTCTAGAAGAGAGTGTAGAAAGAAAAGATA TCCTAATGTTCCAGGTGCAAACAGAAAAGAGCGAAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00029461-exon-sc0000748-1575043694:152935..153226 | TCONS_00029461-exon-sc0000748-1575043694:152935..153226 | Clytia hemisphaerica | exon |
| TCONS_00029461-exon-sc0000748-1575043694:151968..152327 | TCONS_00029461-exon-sc0000748-1575043694:151968..152327 | Clytia hemisphaerica | exon |
| TCONS_00029461-exon-sc0000748-1575043694:150484..151621 | TCONS_00029461-exon-sc0000748-1575043694:150484..151621 | Clytia hemisphaerica | exon |
| TCONS_00029461-exon-sc0000748-1510915933:152935..153226 | TCONS_00029461-exon-sc0000748-1510915933:152935..153226 | Clytia hemisphaerica | exon |
| TCONS_00029461-exon-sc0000748-1510915933:151968..152327 | TCONS_00029461-exon-sc0000748-1510915933:151968..152327 | Clytia hemisphaerica | exon |
| TCONS_00029461-exon-sc0000748-1510915933:150484..151621 | TCONS_00029461-exon-sc0000748-1510915933:150484..151621 | Clytia hemisphaerica | exon |
| TCONS_00029461-exon-sc0000748-1491911889:152935..153226 | TCONS_00029461-exon-sc0000748-1491911889:152935..153226 | Clytia hemisphaerica | exon |
| TCONS_00029461-exon-sc0000748-1491911889:151968..152327 | TCONS_00029461-exon-sc0000748-1491911889:151968..152327 | Clytia hemisphaerica | exon |
| TCONS_00029461-exon-sc0000748-1491911889:150484..151621 | TCONS_00029461-exon-sc0000748-1491911889:150484..151621 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000748 | supercontig | sc0000748:150484..153226 - |
Blast
The following BLAST results are available for this feature:
|