TCONS_00029463 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029463
Unique NameTCONS_00029463
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029463 ID=TCONS_00029463|Name=TCONS_00029463|organism=Clytia hemisphaerica|type=transcript|length=1583bp
ACATGAACAAACACTTTCTAGAAGAGAGTGTAGAAAGAAAAGATATCCTA
ATGTTCCAGGTGCAAACAAAAAAGAGCGAAAACAGAACCTTAACCGACAa
tccaacaaaatttttaacGAATTTGTTGAACAATATTGCGTTGAAAACAA
AATCGACCAGATGAAACtcctcgaaaacgaaagtgaacgTAAAGAAATGG
TAATcgaaaacaaagtcaaaaatCTTCGTCGTGAAAAAATGGCATGCGCA
ATGAAAATCGGAGCATTCGATATGGAGAAATTCCCAAGAAGTAAAGAAGC
TCTGGCATTTATGACCATGTATGATTCACGCGAAACAAGAAATCTTTTAC
CAAAGAAATTTCTCGCTTTATGTGGCATCAAGCGAGAAGCTCTATGTAGA
GATAAAATGAAGGAACTGGAAGATCCAAATATGATGTCAAAACGCATGGT
CAGATGTGAATCGTACAAGTTCTATAACGAACTGATAGAAGATTATTGTA
ATAAGCATGGCATTGACATTACATTGTTCACTGAAAATAGTATGAACAAT
AAGCGAAAAATTCCGAAGGAACGAATGGATAAACTACGAAacgctaaaaa
gaaaaatcagaaattcaAAGCCAATAACAGAAAAATGAAACCTTCCCTTT
CCAAGTCTTCCGAGGAGTCTCCAAAACGTTATTGGAACCAATCAAAATCG
AGATCAAACCAAGAAGCTGTTACCGCTTCGCCATCAACCTCTATTTTAGC
GAATTACTCTGAAAGACGTTTCTGGACTACTGACAGATCTCAAACCAAGA
TGGAATCAACAAATTTGAATTCAAATTCACCGAAGGAAAGGCatgaagaa
aattttgtgatACCTGAATCACAAGCTTACTCCACGGAATCTCACCAGCC
ATCAATCCTGGATCAACAAAAGCTCATTGTACAAACACGTCCAAATTGTT
CAACACTCCAAGGGCGTAGAGTGCATTCTCAACATTTTCATAAATCAAAC
CAACATTTTAATCATATCCctccccaaaatactggtttaAATCCAAATCT
AAACACCGCTCAAATGCGACAAAGTGAAATTCGTTATGGGCCAAGATCCC
ATCGAGGGATCAACCAGGTTGGACCTCCAAGGCTAGCATTGAACCAAGTG
AAGCAATCATTGACCGCTGTGAGTCATCAACCAATTAGACTATTTCCTAA
AGCTCCTAGATTCGCATCAAATCCTAAATGTGGTCTTGTATCGGTGTTTC
CTAGAATGGATACTCCTCCAAGGCTTACAGTTGTTCCACGAGCGGGGTCT
AGAAATATACATCCCGCAGGATTCGAAGGTGTTGGCATTTCACGCCCATT
TTTCTCACCAAGGTTTCAACAAGTACGACCGCTTACAATTCAGAGATATC
CACACCATCAAGTCCAGCGTGCCCACAGCTTCTCAAGAGAGAGATGGGAT
AAGTACAGTTTCAatcaatattgaaaattgacggATGCGTTCATTGGTCA
AATCGACAGTTGAAAttcgtttttattgtttttagtACATCAATTGTTTT
Ggatacttttttcttttgtttgatttgtttcca
Run BLAST on NCBI

transcript from alignment at sc0000748:150484..155567-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029463 ID=TCONS_00029463|Name=TCONS_00029463|organism=Clytia hemisphaerica|type=transcript|length=5084bp|location=Sequence derived from alignment at sc0000748:150484..155567- (Clytia hemisphaerica)
ACATGAACAAACACTTTCTAGAAGAGAGTGTAGAAAGAAAAGATATCCTA
ATGTTCCAGGTGCAAACAAAAAAGAGCGAAAACAGGTATTGGAAGTTAAT
TCTTTAAGATATTTTGTCTTTTCGAAGTAGAGAGTCTGTTAACTTGAAGG
TTTTATTTTTACATAATTGTTCCCGTTTCATACCAGATACATATTTTATA
TCAGGACAGTGTTTTCTTATTGTTATATTATGCTGATATAAGCAAAAAAT
GTTTTTCTTTTCCTCTTTCTGACCAATCTTGCTCCACATCTGTGTCAATC
CATTGAATCCAATGTAAAAAAGCTTGTGAATTGAAATTGATGAGTAAGCA
GACTCCTATTTAAAAACAAAACCTTTAACCTGAATGGGATTGTCATAAAG
GGAAAATAAATTTATTTTCGCATTGACAATTTCAATGAGCTTTCACTTCT
CAATGTAACTTGGGAAAATAAACTTTCCACATTAAGAAAACGTCACATTG
ACGCTGTTTTCTTGGGTTGAGCTGAGAAATTTAACATACCCGTTTAAAGT
TTTTAACTAATGCAATTTCGCGTCCAAAGTGTTTTGCATGTGACATCAGT
CCTTTCGAGCTGAAAAATTTAACCCATGAATTTGTTGTCTCCCCTTTTCT
TTAGGTGTTCTGAGATGTATCTATTTTTTTCGATTTCAACAGAACCTTAA
CCGACAATCCAACAAAATTTTTAACGAATTTGTTGAACAATATTGCGTTG
AAAACAAAATCGACCAGATGAAACTCCTCGAAAACGAAAGTGAACGTAAA
GAAATGGTAATCGAAAACAAAGTCAAAAATCTTCGTCGTGAAAAAATGGC
ATGCGCAATGAAAATCGGAGCATTCGATATGGAGAAATTCCCAAGAAGTA
AAGAAGCTCTGGCATTTATGACCATGTATGATTCACGCGAAACAAGAAAT
CTTTTACCAAAGAAATTTCTCGCTTTATGTGGCATCAAGCGAGAAGCTCT
ATGTAGAGATAAAATGAAGGAACTGGAAGATCCAAATATGATGTCAAAAC
GCGTAAGAATTTATTTTGTTATCTTGTTCACGACAACAAAATTTAAAATA
CTATGTGAGCTATGAAGGCTATTCTATTGTTTTTAACAAGTTCCAAGGGA
GGAAGTACAAGTTGAACTAACGATGAGAGATAGTGAATTTTTACTGAGGC
TCAGCTTTAATATACTTACTCTAACTCATTTATTTTAACCCTTTTAAGTT
AAAATCAACATTTTCTTACCCATTTCTGAAAGATGAGATTGTGAACTGTA
CTTAATTTATTGTAAGCTTGGCCCAATATTAAGCTTCATGTTGTCATAAA
ATTATTCATATGAAAAACGGGTATATTGTTCTCTTTTGATAACTTCAGAT
GGTCAGATGTGAATCGTACAAGTTCTATAACGAACTGATAGAAGATTATT
GTAATAAGCATGGCATTGACATTACATTGTTCACTGAAAATAGTATGAAC
AATAAGCGAAAAATTCCNCAAGAGTTATTACCTTAAAGGAAGAAAAAAAA
ATTTGGTGGATTTGGCCAGAATCCGCCAAATTAAACTTTTTAAAAATATG
ATCTCTTTTAAAGGTGTTTTTGCATTTTATTTGCTGTTTTTACACCATTT
TAAGGATAAATTTTTCAGCAAACGCCAAATTAAATTCCCTCTAAAAAAAT
TTTTTTTTTCCTGCCAAAATTTCTTTCTTTAAGGTATCAACAAGAATTAT
TATTTGGTTTTGTACCTGATAACGTTATTGTTGCCTTTCAACAAGTTGAG
TAACGTAAATTCGTGAGTGATTTAAAGAAAGCACAAATGACTTTACTGAA
ATCTGAAAGACAAAATATTGCAAATGTAAGACTTTTTATGGCACCAATCA
TTTCAGTTTTTGCAATATTGCCTCTTAGAAATTTTTCTTTAGTCGGTTTT
GTTTCGAATATCGCATGCGAATGAAGCATTTCGTAGTAACCTTCGTTAGA
TTTAATTGTGTTTTGTAATTTTGTAGTTTTTGGTTATTTTTGTGTTATTT
TTTGTAAATAGATTTATATTTTTTGTTTCCAATTCTAATTTTTAGTCTCG
CTGGTTCAAGCGTGCAACTTACATATATTCATTGGTTATCATCTCCAGGG
TTGGGTACAAATTCGGTCGGTTTACCTGTTTTTCTCTACAGTAAAAATGT
TTCTTTTTAATTCCGGCAAATATTTTGATCTTCTTGCTAAATACCTCCAA
TCTGGTGAATCTGTTGAGCCTAAATGAATTCATTTCCAAACAAGAATGCA
TGTAATTTTTTTCTTTTTTAGTTTTAAAGAAAAAGTTTAAAAATTCGACA
AAATATGGAAAAGATAATAAACCTTAACAACGAGCAAATTAATCAATCGA
AGGTATCCCTCGAAGATGTTAAGAATGAATCCAACTGTGGTGAATCTGGA
AAAATCTTGCGAAGTCAACGTCCTCTTCAAACAATGGGTTGGTACCAACC
TCATGAGTTAGCTGGTATTGTTCCTGATGACGTTGTGAGGGCTTTCCAAC
ATGAACAAATACTTTCTAGAAGAGAGTGTAGAAAGAAAAGATATCCTAAT
GTTCCAGGTGCAAACAGAAAAGAGCGAAAACAGGTATTGGAAGTTAATTC
TTTAAGATATTTTGTCTTTTCGAAGTAGAGAGTCTGTTAACTTGAAGGTT
TTATTTTTACATAATTGTTCCCGTTTCATACCAGATACATATTTTATATC
AGGACAGTGTTTTCTTATTGTTATATTATGCTGATATAAGCAAAAAATGT
TTTTCTTTTCCTCTTTCTGACCAATCTTGCTCCACATCTGTGTCAATCCA
TTGAATCCAATGTAAAAAAGCTTGTGAATTGAAATTGATGAGTAAGCAGA
CTCCTATTTAAAAACAAAACCTTTAACCTGAATGGGATTGTCATAAAGGG
AAAATAAATTTATTTTCGCATTGACAATTTCAATGAGCTTTCACTTCTCA
ATGTAACTTGGGAAAATAAACTTTCCACATTAAGAAAACGTCACATTGAC
GCTGTTTTCTTGGGTTGAGCTGAGAAATTTAACATACCCGTTTAAAGTTT
TTAACTAATGCAATTTCGCGTCCAAAGTGTTTTGCATGTGACATCAGTCC
TTTCGAGCTGAAAAATTTAACCCATGAATTTGTTGTCTCCCCTTTTCTTT
AGGTGTTCTGAGATGTATCTATTTTTTTCGATTTCAACAGAACCTTAACC
GACAATCCAACAAAATTTTTAACGAATTTGTTGAACAATATTGCGTTGAA
AACAAAATCGACCAGATGAAACTCCTCGAAAACGAAAGTGAACGTAAAGA
AATGGTAATCGAAAACAAAGTCAAAAATCTTCGTCGTGAAAAAATGGCAT
GCGCAATGAAAATCGGAGCATTCGATATGGAGAAATTCCCAAGAAGTAAA
GAAGCTCTGGCATTTATGACCATGTATGATTCACGCGAAACAAGAAATCT
TTTACCAAAGAAATTTCTCGCTTTATGTGGCATCAAGCGAGAAGCTCTAT
GTAGAGATAAAATGAAGGAACTGGAAGATCCAAATATGATGTCAAAACGC
GTAAGAATTTATTTTGTTATCTTGTTCACGACAACAAAATTTAAAATACT
ATGTGAGCTATGAAGGCTATTCTATTGTTTTTAACAAGTTCCAAGGGAGG
AAGTACAAGTTGAACTAACGATGAGAGATAGTGAATTTTTACTGAGGCTC
AGCTTTAATATACTTACTCTAACTCATTTATTTTAACCCTTTTAAGTTAA
AATCAACATTTTCTTACCCATTTCTGAAAGATGAGATTGTGAACTGTACT
TAATTTATTGTAAGCTTGGCCCAATATTAAGCTTCATGTTGTCATAAAAT
TATTCATATGAAAAACGGGTATATTGTTCTCTTTTGATAACTTCAGATGG
TCAGATGTGAATCGTACAAGTTCTATAACGAACTGATAGAAGATTATTGT
AATAAGCATGGCATTGACATTACATTGTTCACTGAAAATAGTATGAACAA
TAAGCGAAAAATTCCGAAGGAACGAATGGATAAACTACGAAACGCTAAAA
AGAAAAATCAGAAATTCAAAGCCAATAACAGAAAAATGAAACCTTCCCTT
TCCAAGTCTTCCGAGGAGTCTCCAAAACGTTATTGGAACCAATCAAAATC
GAGATCAAACCAAGAAGCTGTTACCGCTTCGCCATCAACCTCTATTTTAG
CGAATTACTCTGAAAGACGTTTCTGGACTACTGACAGATCTCAAACCAAG
ATGGAATCAACAAATTTGAATTCAAATTCACCGAAGGAAAGGCATGAAGA
AAATTTTGTGATACCTGAATCACAAGCTTACTCCACGGAATCTCACCAGC
CATCAATCCTGGATCAACAAAAGCTCATTGTACAAACACGTCCAAATTGT
TCAACACTCCAAGGGCGTAGAGTGCATTCTCAACATTTTCATAAATCAAA
CCAACATTTTAATCATATCCCTCCCCAAAATACTGGTTTAAATCCAAATC
TAAACACCGCTCAAATGCGACAAAGTGAAATTCGTTATGGGCCAAGATCC
CATCGAGGGATCAACCAGGTTGGACCTCCAAGGCTAGCATTGAACCAAGT
GAAGCAATCATTGACCGCTGTGAGTCATCAACCAATTAGACTATTTCCTA
AAGCTCCTAGATTCGCATCAAATCCTAAATGTGGTCTTGTATCGGTGTTT
CCTAGAATGGATACTCCTCCAAGGCTTACAGTTGTTCCACGAGCGGGGTC
TAGAAATATACATCCCGCAGGATTCGAAGGTGTTGGCATTTCACGCCCAT
TTTTCTCACCAAGGTTTCAACAAGTACGACCGCTTACAATTCAGAGATAT
CCACACCATCAAGTCCAGCGTGCCCACAGCTTCTCAAGAGAGAGATGGGA
TAAGTACAGTTTCAATCAATATTGAAAATTGACGGATGCGTTCATTGGTC
AAATCGACAGTTGAAATTCGTTTTTATTGTTTTTAGTACATCAATTGTTT
TGGATACTTTTTTCTTTTGTTTGATTTGTTTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016807XLOC_016807Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029463-exon-sc0000748-1575043694:155483..155567TCONS_00029463-exon-sc0000748-1575043694:155483..155567Clytia hemisphaericaexon
TCONS_00029463-exon-sc0000748-1575043694:151968..152327TCONS_00029463-exon-sc0000748-1575043694:151968..152327Clytia hemisphaericaexon
TCONS_00029463-exon-sc0000748-1575043694:150484..151621TCONS_00029463-exon-sc0000748-1575043694:150484..151621Clytia hemisphaericaexon
TCONS_00029463-exon-sc0000748-1510915933:155483..155567TCONS_00029463-exon-sc0000748-1510915933:155483..155567Clytia hemisphaericaexon
TCONS_00029463-exon-sc0000748-1510915933:151968..152327TCONS_00029463-exon-sc0000748-1510915933:151968..152327Clytia hemisphaericaexon
TCONS_00029463-exon-sc0000748-1510915933:150484..151621TCONS_00029463-exon-sc0000748-1510915933:150484..151621Clytia hemisphaericaexon
TCONS_00029463-exon-sc0000748-1491911889:155483..155567TCONS_00029463-exon-sc0000748-1491911889:155483..155567Clytia hemisphaericaexon
TCONS_00029463-exon-sc0000748-1491911889:151968..152327TCONS_00029463-exon-sc0000748-1491911889:151968..152327Clytia hemisphaericaexon
TCONS_00029463-exon-sc0000748-1491911889:150484..151621TCONS_00029463-exon-sc0000748-1491911889:150484..151621Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000748supercontigsc0000748:150484..155567 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.194125	0.271335	0.18657	0.00935565	0.125685	0.0576782	0.216055	0	0.041015	0	0	0.091007	0.0420428	0	0	0.130285	0.0625501	0.156515	0	0.0335743	0.161788	0.0940043	0.0540057	0.0662858	0.10675	0	0.0897451	0	0.0837513	0.0317075
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029463 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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