XLOC_011865 (gene) - C. hemisphaerica

Overview
NameXLOC_011865
Unique NameXLOC_011865
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000379:449517..456678+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_011865 ID=XLOC_011865|Name=XLOC_011865|organism=Clytia hemisphaerica|type=gene|length=7162bp|location=Sequence derived from alignment at sc0000379:449517..456678+ (Clytia hemisphaerica)
TTTTCAGGTaatgataaaataaataaaaatggcaGGTTTGATTGcaaaga
aaaatcaagccaAACTTGCTGAAAAAATATACAGGTCAACGCATTGTAAG
TATTATAAATTATGATATGAACCACTGCGACGAGTatgcaaaatttgagc
aatttttcttaGAACCCAATACGTCATTTACAATTGTTGTAAAAGTGATG
TATTTTCAAGATCTTGTATAGGTACAGATTCTGAATTGCATATTGAAGGT
TCTTTGCCAcaatatcaaaagttacagccatcaATGACAAAGTTATAGTT
ATTGGTTCTTACTGGACACTGAGAACTATGCCTCCACCTCCTACCTCGTT
GCTATTTTACAGTGATttttacatgtgaaaaaaacgatATGGAATCTGAC
TCAGGCctggcggaagcggggagaatggagagacttcagcctccccactt
ttgagcaaatgagatttttttctcaaattcctagcggcttttatctcatt
ttgagccttcagtcTCCCCTTTAatggttgttccgccgggcctttGATTA
AAAGCAAAGATTTGCTTCAGCTGGCCTATATCAAATAGTTAAATCATAGT
TGAATCATATAAGATTTGACGATTATTTTGACCAATAAGCTTTTGTCCTC
TTGTTTATATATGCCTTTGATATTCAACCCTCATTTGATTCAAAATATCT
CCTATATCCCCTATAAACTTCTCTTCATTGCATTCTTTTCTTCCTGTATT
TTCCTTTAGTTTCAAGATGTGAAGTTGAAAATCTGCTAAATGTCTTTCGA
GTTCATGGAGCGAATCAGAAAACTAATAAAATGGATCGAACTAAATTTCG
AACAGTTCTTCACAACACCTTTCAAATGACCGATGATATTCTAATGGATA
GAAGTAAGAAAATGCTGTTTTCTTGACCCTACTAGGCTTTTAACGGCCCT
TCAAAACTAGGGGGCGGGGCAGTTCCTggaccaccccttaacttttgatc
tagtaggcctttttggatgaaatttggcacacaagatccttgtcatataa
ggtgatttttgacaaaaatgatgGGTCACTCATGCCCAGAGTGAGCGAAA
ACCAaaaaattcctttgttcttataaatagctattgtattctaccaaaag
ctttagaaaacagttccctgagtctaaaatgcttattttatcctaaatat
tcaataaattacggtttaaacggtatatttgacatgaaaaataaatttgt
attggaaatgtgtcaatttttgtgacaccttaatgtcagaaatgtcatca
tgctcaaggtttGAGAATTTTTAGGTGtcgaactttttttattttgaagc
taaataaaaatttcatgccaaaagctctattatttcttGAGCTATTACCA
TTAATTTGACccccgaacagaaacagccccccccccttgtACGAATAGGG
TTTTAACCCTTGTTAACCTTTCGAGCATCTTCCTAGCATCTTTGGGGGAG
GGCTCGAGGCCCCCCTTAAATCTCAAGATTGACAGTTGCTATGACGTTGA
AATTATGACCAGTGATAGATATTGACTATTTAAGACAGTATACGAGCTTG
TATCATCAATACCTAACACTTGTCAATTGCATCTTCCAATCACTAGGTAC
AGTATCCTTGGGCTGTTTAGGCAAAACAGGGCAATTTTGGgtcggtctgt
aaaatacacggtACCAACAGGTGCCAAAAAGTTTACCCTCTGCCCCGTCA
CGTGGAGTTGCCTCACAAAATTAGAGCAAAAGaaataaagtaaaagaaaa
ttagAGAGCACGGATCCTATTGTATTCGTATTGTCGGTATTTTCAAAAGA
CGATGGCGTCATCACAtgacaatgacgtcatcaatgatgccaaaattttc
accaaagatgacAATTTATATTTGGTGCacactttcaaaatttcaagtca
attgaataaagatttcaaaagttatcgaaaatttttattttgggaGGGGA
CCTCTTTgcctcgaacaagttttctcgtcccttcagttaatgATACCTTA
TAAATTGATCTCCATAACTCTAAATTTCCACTATTCGAACCAATTTGTGT
GCCGTGCAGGTTCGAGTTTtgaagactccactgtatttctGAAATCTGCA
AAATCGTAAAACCCTACACGAAACTTTTAAGTCATACatggtagtctagc
aagctagacgactaatttatacatagtagaaataaagcaaaaaatagtga
atggaacaattttagtcgtctagaaacctttgtgcattaactccaaacaa
aagaaaagtgtcaatattgcaattataattttttcctgctcaaaaNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNttcttccagtcgtttatacaaactaaatcccgtattat
tattattattagtattggtattattagtattacacgcattataaacgact
ccagtctacataCATGGTGGAAAGTAAccttaaagttatttttttaaagt
ctttAAAGTCAGCCGTATTTAAATACCTTTTTCATAAGGAAGTaagtgtt
gtttttttcttcgtgaaaattatattaagGAAAGAGCGAGAACGTTTGAT
AAAATCTCAAATTTATTGCCAAATTGTGGCCCGTGACCTCCCCCCCCCTT
GATTTCAGCTTCCTTGTGTTTTGGGATCCAGCATTTGGAGTTATAATAGC
CTTCTATTAAAAGGAATTTTCAATGTCAAAAAGAGttaataataattttt
aaaatgtatttttttcgcATGGTatgacacgtttttttaataagaacatc
caacaattttgaagccttcggatgttcttaactttttgagttttaagcct
aaaaatgttcataacatcttcttattttcaccattttgtcagcattttcg
gccatttttctaagaaatcgggtattttagaacccgcgaagccttaaaat
gttcttaactttttggacctacctcggaggtcctataaattaaccgatgt
ccgtccgtccgtccgtccgtccgtctgttaccaacttttctcaggattgg
cttattagttttttctgattttttgctcaaagatgcgtatcaacaatgcc
caaaacatggtcgagtccgattttgagaaaaaaatttttccggccgaaaa
tgccgcaaatatgccggaaatcgccgtttttctaggttttcattggactt
tttccttataattagttgttttttcattcaaaaacattattgatagcaat
gcccaccgtcaagcatgtttcaattttcaataaaattgatttttgaagcc
ggaactatttaaaaatcgccggaacaacctattttcgccggaaagacagt
atttcttgaatttctcgagctgtactttatatttcttTATGAAATTATCC
ACActtatgcaaaatgacaatacctaaaatgtgacggagcccgattttcg
ataaacatttttttccggccgaaaatgccggaaatatgccggaaaaactg
tttttttggcattttctcgagattttatcattagttttttcagatttttt
gctcaaagatgcatattaacaatgcccaaaacatggtcgagtccgatttt
tgagaaagatttttttccggccgaaaatgccggaaatataccggaaTCGC
cgttttgtagattttcatttgactttgttctaatatttctttgttttttt
cacacaaaaacattattgataacaatgcccaccatcaagcatgattcatt
tgtcgataaaactgatttttgcaaccggaactttctatttctttttttct
ctactccccttccctctcccctatcaacaatcaatgatgaaattaatACG
TTATGCACTTTTGCTAAatgctatgttttctgactgattgttttcatttt
tctctgtattgctatctaactttcatcNcgctatgttttctgactgattg
ttttcatttttctctttattggtatctaactttcatcatcaggtaggtcc
attcagcatgtagcttgttctTTATAtattggccattgaagccttatgtt
tttatatagtttgttcttataaaaaacgtgtaattgtttaattttttatt
actcAGTCTTCAGAGCTTTCGATACAGACAACGACAGCAATATAAGTATG
GAAGAGTGGATTATGGGACTTTCTGTTTTCCTTCGTGGAACACTCGATGA
ACAAGCTCGCTGTGAGTGAATTTATTTGTATTATGTAGCTATCTTTGATT
TGAACATTTACACCCCCTTCTAACCCCCGGGTGTTTGTTtccaactggaa
aaattggccaaaatatcgtccccgatggaaaattatcctcaaaTTTTTGT
ACCCACTGAAAATGACAatcaatcaaataaaccaatcctcactacaaaat
atttattatattttccatccccactgaattttctgactcaaaaacaaaag
aattgaaatcccctcTTATAAAGATATGGAATTATCAATCCTCGTCGAGT
TTCAGTCCCTTATTTTTATCCcaaactggctgaaaaaattctaccgggtc
tgtgagaagggggtgttattaTCTTTTTCATAGTTTGAACTACAATGATG
ATCAATCTGCTTTATTAAAAAATCTCCAACCTCCTTTAGATAGAACCTTT
CAATTTATGAATCTATCAATAAATATGACTATTTGAGACTTTTCTTAAGG
AGTGGCATTTTCTCGAGGTTACACTGTCTGAAAAAAAGCGAAGCCGAAAG
TTTTCCCAAGGTGTAGAGCAAGAGGTAGGGGTCAGTAAAGCTCTGTGTCT
TCTGTACTTTGTACCTTTAAAGGGGAAATTTTACCAAATTACAATTAACT
TAAGTCATTATTAGGGTGTCATTTTAGAGTGgtaaacaatcaaaacaaag
cgGAAGTTTTCAAGTTGGAAGATCTTAAAGGGACAAAAAAGTATtgacaa
aatttgtaaacaaaccgtttgtcaaaataaaaaatgaaaccaaatatggc
tgattttgattgtttcaattgttttacaagtttgttttggacacgttatt
ttaattgttctctttaatgacacgtggttcgcgcaatgtgtacattttac
tacttttatgtccctttaatccTAACAGACCCCCTTCCGCACTATGCATG
ACTTCGATTCCTTTGTAATTCAAAAATGTATGTTTTTTTCTATTCGCCAg
attgtttcaatgtttatgATTTGAATTCAGACGGTTACATAACACGTGAA
GAGATGTATCATATGCTTAAACATTCGCTCATTAAGGTAGGTATAAAACC
CCCCTCAAACCGTGGTGCactggtagagcatccggctacggttcgcaagg
ttgtgggttcaacccccagccgggtcataccaaagattcacaaaatggta
cttgatacctctctgcttgatgctcaacaATTGGGAGAacgatcaagggt
aagtggataaatccagggaaaggagtggcgccctcccctaccttcaggtN
ggatcaagggtaagtggataaatccagggaaaggagtggcgccctcccct
accttcaggtagatagctatcgaaagaggagccttcgggtcgcttAGGAC
TGCGGGCGCAGACTTATAAAACCCCCTTGTAAACCTTCTCTTAAATATTC
GTTCATTAATGCTGGTTGCCCActggaaaaaaaaagtttgtcgcaaaaaa
taaatccagatatatgtctggaattaaaaatctattgttttctttgcgat
aaagaggaaaaaataagaaataaaaaaggctTACGGACCCCGCTTAAACA
TTCGCTCGTTACTGTAAGGTCTGTTACTGTAAGGTATGTTAAACCCCCTT
GTCTCAGACCAGTTTGGAGCATCTAGATCCACTGGAAAAATATCAATCTA
AAATTCGTCCCCTTTAAGAAAAATCCCCTGGAACTTTATCTATATTGGAA
AATGTTCGCTTAACTTTGTGGAtgatactaaagtctgtccagatataatt
ggcagtggaaacaagaatgcctgtaacttttgatagtcaaatataattat
ggaaatattttttgcttgttttagagNTGGAAAATGTTCGCTTAACTTTG
TGGATGATACTAAAAAGTACTTCATGCACAGAAGAAGTACaattgaaaac
tttaaaaaacttgaaaactgaaaaatggtagaaaatggttattttttcAG
GGCCTTTTTCCGGCAAAGATCACTAAAATCGCCACCCAATGAAACAAGTG
ATCGTCTATCACCAACGTTATTTATTTGAAAGTTCTAATATTACCtttgg
gaagaaattttggcgagaatttaatttggcgaattttagatttttctaAT
TCGCCAAAATTAGTTTTCTTAAGGTATATGTAAACAGCCTCTCTCTAAGG
TTTTTCTGTTGAACCCCTTGACTTGAAAAGGTATTTGATGTCTCTCTATC
TGTTTAATGCTCGGTATATATTGATGCTTTCCCTTTCTTCGGGTAAACAG
CTAGTTGAAATCAGATACATTCCGtctttaaaaattattaataCTAGTAT
TCAACGAATTCTTAAAAGAATCTAAACCCATTCGTTGCGCAAAGCCCCGT
CTCGGTCGGAAAAAAGAATTTGTTACGACCACTCCCCCTACCGCTTCCCC
GAGGATTTGAATAAACTGTAGACGATCCTATTGTCTAcacaaactctacc
gccactattttttttgcgaaaaccgccctgacgccctgactctgcgcata
tacattttcccgcgtttactgactcTCTAAATAAACTGTCGTGGGTGCTG
TTAATTAATGGTCTTAGAAATCTTTTTCTGTGTTTCTATTCAGCAACCAA
CAGAAGAGGACCCTGATGAAGGGGTTAAAGACCTGGTCGAAATCATTCTC
AAGAAAatggta
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00021187TCONS_00021187Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00021187-proteinTCONS_00021187-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000379supercontigsc0000379:449517..456678 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
114.26	113.57	287.14	312.5	383.25	274.03	236.4	231.03	118.66	100.88	82.79	101.68	14.24	14.2	11.95	12.97	23.97	30.78	22.76	24.09	28.51	26.48	57.23	44.51	162.48	142.19	31.54	32.4	20.1	25.04