TCONS_00021187 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021187
Unique NameTCONS_00021187
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021187 ID=TCONS_00021187|Name=TCONS_00021187|organism=Clytia hemisphaerica|type=transcript|length=499bp
TTTTCAGGTaatgataaaataaataaaaatggcaGGTTTGATTGcaaaga
aaaatcaagccaAACTTGCTGAAAAAATATACAGGTCAACGCATTTTTCA
AGATGTGAAGTTGAAAATCTGCTAAATGTCTTTCGAGTTCATGGAGCGAA
TCAGAAAACTAATAAAATGGATCGAACTAAATTTCGAACAGTTCTTCACA
ACACCTTTCAAATGACCGATGATATTCTAATGGATAGAATCTTCAGAGCT
TTCGATACAGACAACGACAGCAATATAAGTATGGAAGAGTGGATTATGGG
ACTTTCTGTTTTCCTTCGTGGAACACTCGATGAACAAGCTCGCTattgtt
tcaatgtttatgATTTGAATTCAGACGGTTACATAACACGTGAAGAGATG
TATCATATGCTTAAACATTCGCTCATTAAGCAACCAACAGAAGAGGACCC
TGATGAAGGGGTTAAAGACCTGGTCGAAATCATTCTCAAGAAAatggta
Run BLAST on NCBI

protein sequence of TCONS_00021187-protein

>TCONS_00021187-protein ID=TCONS_00021187-protein|Name=TCONS_00021187-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MAGLIAKKNQAKLAEKIYRSTHFSRCEVENLLNVFRVHGANQKTNKMDRT
KFRTVLHNTFQMTDDILMDRIFRAFDTDNDSNISMEEWIMGLSVFLRGTL
DEQARYCFNVYDLNSDGYITREEMYHMLKHSLIKQPTEEDPDEGVKDLVE
IILKKMV
Run BLAST on NCBI

transcript from alignment at sc0000379:449517..456678+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021187 ID=TCONS_00021187|Name=TCONS_00021187|organism=Clytia hemisphaerica|type=transcript|length=7162bp|location=Sequence derived from alignment at sc0000379:449517..456678+ (Clytia hemisphaerica)
TTTTCAGGTaatgataaaataaataaaaatggcaGGTTTGATTGcaaaga aaaatcaagccaAACTTGCTGAAAAAATATACAGGTCAACGCATTGTAAG TATTATAAATTATGATATGAACCACTGCGACGAGTatgcaaaatttgagc aatttttcttaGAACCCAATACGTCATTTACAATTGTTGTAAAAGTGATG TATTTTCAAGATCTTGTATAGGTACAGATTCTGAATTGCATATTGAAGGT TCTTTGCCAcaatatcaaaagttacagccatcaATGACAAAGTTATAGTT ATTGGTTCTTACTGGACACTGAGAACTATGCCTCCACCTCCTACCTCGTT GCTATTTTACAGTGATttttacatgtgaaaaaaacgatATGGAATCTGAC TCAGGCctggcggaagcggggagaatggagagacttcagcctccccactt ttgagcaaatgagatttttttctcaaattcctagcggcttttatctcatt ttgagccttcagtcTCCCCTTTAatggttgttccgccgggcctttGATTA AAAGCAAAGATTTGCTTCAGCTGGCCTATATCAAATAGTTAAATCATAGT TGAATCATATAAGATTTGACGATTATTTTGACCAATAAGCTTTTGTCCTC TTGTTTATATATGCCTTTGATATTCAACCCTCATTTGATTCAAAATATCT CCTATATCCCCTATAAACTTCTCTTCATTGCATTCTTTTCTTCCTGTATT TTCCTTTAGTTTCAAGATGTGAAGTTGAAAATCTGCTAAATGTCTTTCGA GTTCATGGAGCGAATCAGAAAACTAATAAAATGGATCGAACTAAATTTCG AACAGTTCTTCACAACACCTTTCAAATGACCGATGATATTCTAATGGATA GAAGTAAGAAAATGCTGTTTTCTTGACCCTACTAGGCTTTTAACGGCCCT TCAAAACTAGGGGGCGGGGCAGTTCCTggaccaccccttaacttttgatc tagtaggcctttttggatgaaatttggcacacaagatccttgtcatataa ggtgatttttgacaaaaatgatgGGTCACTCATGCCCAGAGTGAGCGAAA ACCAaaaaattcctttgttcttataaatagctattgtattctaccaaaag ctttagaaaacagttccctgagtctaaaatgcttattttatcctaaatat tcaataaattacggtttaaacggtatatttgacatgaaaaataaatttgt attggaaatgtgtcaatttttgtgacaccttaatgtcagaaatgtcatca tgctcaaggtttGAGAATTTTTAGGTGtcgaactttttttattttgaagc taaataaaaatttcatgccaaaagctctattatttcttGAGCTATTACCA TTAATTTGACccccgaacagaaacagccccccccccttgtACGAATAGGG TTTTAACCCTTGTTAACCTTTCGAGCATCTTCCTAGCATCTTTGGGGGAG GGCTCGAGGCCCCCCTTAAATCTCAAGATTGACAGTTGCTATGACGTTGA AATTATGACCAGTGATAGATATTGACTATTTAAGACAGTATACGAGCTTG TATCATCAATACCTAACACTTGTCAATTGCATCTTCCAATCACTAGGTAC AGTATCCTTGGGCTGTTTAGGCAAAACAGGGCAATTTTGGgtcggtctgt aaaatacacggtACCAACAGGTGCCAAAAAGTTTACCCTCTGCCCCGTCA CGTGGAGTTGCCTCACAAAATTAGAGCAAAAGaaataaagtaaaagaaaa ttagAGAGCACGGATCCTATTGTATTCGTATTGTCGGTATTTTCAAAAGA CGATGGCGTCATCACAtgacaatgacgtcatcaatgatgccaaaattttc accaaagatgacAATTTATATTTGGTGCacactttcaaaatttcaagtca attgaataaagatttcaaaagttatcgaaaatttttattttgggaGGGGA CCTCTTTgcctcgaacaagttttctcgtcccttcagttaatgATACCTTA TAAATTGATCTCCATAACTCTAAATTTCCACTATTCGAACCAATTTGTGT GCCGTGCAGGTTCGAGTTTtgaagactccactgtatttctGAAATCTGCA AAATCGTAAAACCCTACACGAAACTTTTAAGTCATACatggtagtctagc aagctagacgactaatttatacatagtagaaataaagcaaaaaatagtga atggaacaattttagtcgtctagaaacctttgtgcattaactccaaacaa aagaaaagtgtcaatattgcaattataattttttcctgctcaaaaNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNttcttccagtcgtttatacaaactaaatcccgtattat tattattattagtattggtattattagtattacacgcattataaacgact ccagtctacataCATGGTGGAAAGTAAccttaaagttatttttttaaagt ctttAAAGTCAGCCGTATTTAAATACCTTTTTCATAAGGAAGTaagtgtt gtttttttcttcgtgaaaattatattaagGAAAGAGCGAGAACGTTTGAT AAAATCTCAAATTTATTGCCAAATTGTGGCCCGTGACCTCCCCCCCCCTT GATTTCAGCTTCCTTGTGTTTTGGGATCCAGCATTTGGAGTTATAATAGC CTTCTATTAAAAGGAATTTTCAATGTCAAAAAGAGttaataataattttt aaaatgtatttttttcgcATGGTatgacacgtttttttaataagaacatc caacaattttgaagccttcggatgttcttaactttttgagttttaagcct aaaaatgttcataacatcttcttattttcaccattttgtcagcattttcg gccatttttctaagaaatcgggtattttagaacccgcgaagccttaaaat gttcttaactttttggacctacctcggaggtcctataaattaaccgatgt ccgtccgtccgtccgtccgtccgtctgttaccaacttttctcaggattgg cttattagttttttctgattttttgctcaaagatgcgtatcaacaatgcc caaaacatggtcgagtccgattttgagaaaaaaatttttccggccgaaaa tgccgcaaatatgccggaaatcgccgtttttctaggttttcattggactt tttccttataattagttgttttttcattcaaaaacattattgatagcaat gcccaccgtcaagcatgtttcaattttcaataaaattgatttttgaagcc ggaactatttaaaaatcgccggaacaacctattttcgccggaaagacagt atttcttgaatttctcgagctgtactttatatttcttTATGAAATTATCC ACActtatgcaaaatgacaatacctaaaatgtgacggagcccgattttcg ataaacatttttttccggccgaaaatgccggaaatatgccggaaaaactg tttttttggcattttctcgagattttatcattagttttttcagatttttt gctcaaagatgcatattaacaatgcccaaaacatggtcgagtccgatttt tgagaaagatttttttccggccgaaaatgccggaaatataccggaaTCGC cgttttgtagattttcatttgactttgttctaatatttctttgttttttt cacacaaaaacattattgataacaatgcccaccatcaagcatgattcatt tgtcgataaaactgatttttgcaaccggaactttctatttctttttttct ctactccccttccctctcccctatcaacaatcaatgatgaaattaatACG TTATGCACTTTTGCTAAatgctatgttttctgactgattgttttcatttt tctctgtattgctatctaactttcatcNcgctatgttttctgactgattg ttttcatttttctctttattggtatctaactttcatcatcaggtaggtcc attcagcatgtagcttgttctTTATAtattggccattgaagccttatgtt tttatatagtttgttcttataaaaaacgtgtaattgtttaattttttatt actcAGTCTTCAGAGCTTTCGATACAGACAACGACAGCAATATAAGTATG GAAGAGTGGATTATGGGACTTTCTGTTTTCCTTCGTGGAACACTCGATGA ACAAGCTCGCTGTGAGTGAATTTATTTGTATTATGTAGCTATCTTTGATT TGAACATTTACACCCCCTTCTAACCCCCGGGTGTTTGTTtccaactggaa aaattggccaaaatatcgtccccgatggaaaattatcctcaaaTTTTTGT ACCCACTGAAAATGACAatcaatcaaataaaccaatcctcactacaaaat atttattatattttccatccccactgaattttctgactcaaaaacaaaag aattgaaatcccctcTTATAAAGATATGGAATTATCAATCCTCGTCGAGT TTCAGTCCCTTATTTTTATCCcaaactggctgaaaaaattctaccgggtc tgtgagaagggggtgttattaTCTTTTTCATAGTTTGAACTACAATGATG ATCAATCTGCTTTATTAAAAAATCTCCAACCTCCTTTAGATAGAACCTTT CAATTTATGAATCTATCAATAAATATGACTATTTGAGACTTTTCTTAAGG AGTGGCATTTTCTCGAGGTTACACTGTCTGAAAAAAAGCGAAGCCGAAAG TTTTCCCAAGGTGTAGAGCAAGAGGTAGGGGTCAGTAAAGCTCTGTGTCT TCTGTACTTTGTACCTTTAAAGGGGAAATTTTACCAAATTACAATTAACT TAAGTCATTATTAGGGTGTCATTTTAGAGTGgtaaacaatcaaaacaaag cgGAAGTTTTCAAGTTGGAAGATCTTAAAGGGACAAAAAAGTATtgacaa aatttgtaaacaaaccgtttgtcaaaataaaaaatgaaaccaaatatggc tgattttgattgtttcaattgttttacaagtttgttttggacacgttatt ttaattgttctctttaatgacacgtggttcgcgcaatgtgtacattttac tacttttatgtccctttaatccTAACAGACCCCCTTCCGCACTATGCATG ACTTCGATTCCTTTGTAATTCAAAAATGTATGTTTTTTTCTATTCGCCAg attgtttcaatgtttatgATTTGAATTCAGACGGTTACATAACACGTGAA GAGATGTATCATATGCTTAAACATTCGCTCATTAAGGTAGGTATAAAACC CCCCTCAAACCGTGGTGCactggtagagcatccggctacggttcgcaagg ttgtgggttcaacccccagccgggtcataccaaagattcacaaaatggta cttgatacctctctgcttgatgctcaacaATTGGGAGAacgatcaagggt aagtggataaatccagggaaaggagtggcgccctcccctaccttcaggtN ggatcaagggtaagtggataaatccagggaaaggagtggcgccctcccct accttcaggtagatagctatcgaaagaggagccttcgggtcgcttAGGAC TGCGGGCGCAGACTTATAAAACCCCCTTGTAAACCTTCTCTTAAATATTC GTTCATTAATGCTGGTTGCCCActggaaaaaaaaagtttgtcgcaaaaaa taaatccagatatatgtctggaattaaaaatctattgttttctttgcgat aaagaggaaaaaataagaaataaaaaaggctTACGGACCCCGCTTAAACA TTCGCTCGTTACTGTAAGGTCTGTTACTGTAAGGTATGTTAAACCCCCTT GTCTCAGACCAGTTTGGAGCATCTAGATCCACTGGAAAAATATCAATCTA AAATTCGTCCCCTTTAAGAAAAATCCCCTGGAACTTTATCTATATTGGAA AATGTTCGCTTAACTTTGTGGAtgatactaaagtctgtccagatataatt ggcagtggaaacaagaatgcctgtaacttttgatagtcaaatataattat ggaaatattttttgcttgttttagagNTGGAAAATGTTCGCTTAACTTTG TGGATGATACTAAAAAGTACTTCATGCACAGAAGAAGTACaattgaaaac tttaaaaaacttgaaaactgaaaaatggtagaaaatggttattttttcAG GGCCTTTTTCCGGCAAAGATCACTAAAATCGCCACCCAATGAAACAAGTG ATCGTCTATCACCAACGTTATTTATTTGAAAGTTCTAATATTACCtttgg gaagaaattttggcgagaatttaatttggcgaattttagatttttctaAT TCGCCAAAATTAGTTTTCTTAAGGTATATGTAAACAGCCTCTCTCTAAGG TTTTTCTGTTGAACCCCTTGACTTGAAAAGGTATTTGATGTCTCTCTATC TGTTTAATGCTCGGTATATATTGATGCTTTCCCTTTCTTCGGGTAAACAG CTAGTTGAAATCAGATACATTCCGtctttaaaaattattaataCTAGTAT TCAACGAATTCTTAAAAGAATCTAAACCCATTCGTTGCGCAAAGCCCCGT CTCGGTCGGAAAAAAGAATTTGTTACGACCACTCCCCCTACCGCTTCCCC GAGGATTTGAATAAACTGTAGACGATCCTATTGTCTAcacaaactctacc gccactattttttttgcgaaaaccgccctgacgccctgactctgcgcata tacattttcccgcgtttactgactcTCTAAATAAACTGTCGTGGGTGCTG TTAATTAATGGTCTTAGAAATCTTTTTCTGTGTTTCTATTCAGCAACCAA CAGAAGAGGACCCTGATGAAGGGGTTAAAGACCTGGTCGAAATCATTCTC AAGAAAatggta

Coding sequence (CDS) from alignment at sc0000379:449517..456678+

>TCONS_00021187 ID=TCONS_00021187|Name=TCONS_00021187|organism=Clytia hemisphaerica|type=CDS|length=2355bp|location=Sequence derived from alignment at sc0000379:449517..456678+ (Clytia hemisphaerica)
atggcaGGTTTGATTGcaaagaaaaatcaagccaAACTTGCTGAAAAAAT
ATACAGGTCAACGCATTTTTCAAGATGTGAAGTTGAAAATCTGCTAAATG
TCTTTCGAGTTCATGGAGCGAATCAGAAAACTAATAAAATGGATCGAACT
AAATTTCGAACAGTTCTTCACAACACCTTTCAAATGACCGATGATATTCT
AATGGATAGAATCTTCAGAGCTTTCGATACAGACAACGACAGCAATATAA
GTATGGAAGAGTGGATTATGGGACTTTCTGTTTTCCTTCGTGGAACACTC
GATGAACAAGCTCGCTattgtttcaatgtttatgATTTGAATTCAGACGG
TTACATAACACGTGAAGAGATGTATCATATGCTTAAACATTCGCTCATTA
AGCAACCAACAGAAGAGGACCCTGATGAAGGGGTTAAAGACCTGGTCGAA
ATCATTCTCAAGAAAatggtaatggcaGGTTTGATTGcaaagaaaaatca
agccaAACTTGCTGAAAAAATATACAGGTCAACGCATTTTTCAAGATGTG
AAGTTGAAAATCTGCTAAATGTCTTTCGAGTTCATGGAGCGAATCAGAAA
ACTAATAAAATGGATCGAACTAAATTTCGAACAGTTCTTCACAACACCTT
TCAAATGACCGATGATATTCTAATGGATAGAATCTTCAGAGCTTTCGATA
CAGACAACGACAGCAATATAAGTATGGAAGAGTGGATTATGGGACTTTCT
GTTTTCCTTCGTGGAACACTCGATGAACAAGCTCGCTattgtttcaatgt
ttatgATTTGAATTCAGACGGTTACATAACACGTGAAGAGATGTATCATA
TGCTTAAACATTCGCTCATTAAGCAACCAACAGAAGAGGACCCTGATGAA
GGGGTTAAAGACCTGGTCGAAATCATTCTCAAGAAAatggtaatggcaGG
TTTGATTGcaaagaaaaatcaagccaAACTTGCTGAAAAAATATACAGGT
CAACGCATTTTTCAAGATGTGAAGTTGAAAATCTGCTAAATGTCTTTCGA
GTTCATGGAGCGAATCAGAAAACTAATAAAATGGATCGAACTAAATTTCG
AACAGTTCTTCACAACACCTTTCAAATGACCGATGATATTCTAATGGATA
GAATCTTCAGAGCTTTCGATACAGACAACGACAGCAATATAAGTATGGAA
GAGTGGATTATGGGACTTTCTGTTTTCCTTCGTGGAACACTCGATGAACA
AGCTCGCTattgtttcaatgtttatgATTTGAATTCAGACGGTTACATAA
CACGTGAAGAGATGTATCATATGCTTAAACATTCGCTCATTAAGCAACCA
ACAGAAGAGGACCCTGATGAAGGGGTTAAAGACCTGGTCGAAATCATTCT
CAAGAAAatggtaatggcaGGTTTGATTGcaaagaaaaatcaagccaAAC
TTGCTGAAAAAATATACAGGTCAACGCATTTTTCAAGATGTGAAGTTGAA
AATCTGCTAAATGTCTTTCGAGTTCATGGAGCGAATCAGAAAACTAATAA
AATGGATCGAACTAAATTTCGAACAGTTCTTCACAACACCTTTCAAATGA
CCGATGATATTCTAATGGATAGAATCTTCAGAGCTTTCGATACAGACAAC
GACAGCAATATAAGTATGGAAGAGTGGATTATGGGACTTTCTGTTTTCCT
TCGTGGAACACTCGATGAACAAGCTCGCTattgtttcaatgtttatgATT
TGAATTCAGACGGTTACATAACACGTGAAGAGATGTATCATATGCTTAAA
CATTCGCTCATTAAGCAACCAACAGAAGAGGACCCTGATGAAGGGGTTAA
AGACCTGGTCGAAATCATTCTCAAGAAAatggtaatggcaGGTTTGATTG
caaagaaaaatcaagccaAACTTGCTGAAAAAATATACAGGTCAACGCAT
TTTTCAAGATGTGAAGTTGAAAATCTGCTAAATGTCTTTCGAGTTCATGG
AGCGAATCAGAAAACTAATAAAATGGATCGAACTAAATTTCGAACAGTTC
TTCACAACACCTTTCAAATGACCGATGATATTCTAATGGATAGAATCTTC
AGAGCTTTCGATACAGACAACGACAGCAATATAAGTATGGAAGAGTGGAT
TATGGGACTTTCTGTTTTCCTTCGTGGAACACTCGATGAACAAGCTCGCT
attgtttcaatgtttatgATTTGAATTCAGACGGTTACATAACACGTGAA
GAGATGTATCATATGCTTAAACATTCGCTCATTAAGCAACCAACAGAAGA
GGACCCTGATGAAGGGGTTAAAGACCTGGTCGAAATCATTCTCAAGAAAa
tggta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011865XLOC_011865Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021187-proteinTCONS_00021187-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021187-exon-sc0000379-1491911889:449517..449611TCONS_00021187-exon-sc0000379-1491911889:449517..449611Clytia hemisphaericaexon
TCONS_00021187-exon-sc0000379-1510915933:449517..449611TCONS_00021187-exon-sc0000379-1510915933:449517..449611Clytia hemisphaericaexon
TCONS_00021187-exon-sc0000379-1575043694:449517..449611TCONS_00021187-exon-sc0000379-1575043694:449517..449611Clytia hemisphaericaexon
TCONS_00021187-exon-sc0000379-1491911889:450276..450419TCONS_00021187-exon-sc0000379-1491911889:450276..450419Clytia hemisphaericaexon
TCONS_00021187-exon-sc0000379-1510915933:450276..450419TCONS_00021187-exon-sc0000379-1510915933:450276..450419Clytia hemisphaericaexon
TCONS_00021187-exon-sc0000379-1575043694:450276..450419TCONS_00021187-exon-sc0000379-1575043694:450276..450419Clytia hemisphaericaexon
TCONS_00021187-exon-sc0000379-1491911889:453873..453977TCONS_00021187-exon-sc0000379-1491911889:453873..453977Clytia hemisphaericaexon
TCONS_00021187-exon-sc0000379-1510915933:453873..453977TCONS_00021187-exon-sc0000379-1510915933:453873..453977Clytia hemisphaericaexon
TCONS_00021187-exon-sc0000379-1575043694:453873..453977TCONS_00021187-exon-sc0000379-1575043694:453873..453977Clytia hemisphaericaexon
TCONS_00021187-exon-sc0000379-1491911889:454967..455052TCONS_00021187-exon-sc0000379-1491911889:454967..455052Clytia hemisphaericaexon
TCONS_00021187-exon-sc0000379-1510915933:454967..455052TCONS_00021187-exon-sc0000379-1510915933:454967..455052Clytia hemisphaericaexon
TCONS_00021187-exon-sc0000379-1575043694:454967..455052TCONS_00021187-exon-sc0000379-1575043694:454967..455052Clytia hemisphaericaexon
TCONS_00021187-exon-sc0000379-1491911889:456610..456678TCONS_00021187-exon-sc0000379-1491911889:456610..456678Clytia hemisphaericaexon
TCONS_00021187-exon-sc0000379-1510915933:456610..456678TCONS_00021187-exon-sc0000379-1510915933:456610..456678Clytia hemisphaericaexon
TCONS_00021187-exon-sc0000379-1575043694:456610..456678TCONS_00021187-exon-sc0000379-1575043694:456610..456678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000379supercontigsc0000379:449517..456678 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
114.263 113.572 287.144 312.501 383.245 274.034 236.397 231.031 118.658 100.879 82.7945 101.682 14.2384 14.1953 11.9483 12.9715 23.9697 30.7808 22.7582 24.087 28.5061 26.4815 57.2299 44.5063 162.477 142.194 31.5367 32.4036 20.0961 25.0401
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
BLAST of TCONS_00021187 vs. Swiss-Prot (Human)
Match: EFCB1 (EF-hand calcium-binding domain-containing protein 1 OS=Homo sapiens GN=EFCAB1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.066e-55
Identity = 84/155 (54.19%), Postives = 117/155 (75.48%), Query Frame = 2
Query:   47 KKNQAKLAEKIYRST-HFSRCEVENLLNVFR--VHGANQK--TNKMDRTKFRTVLHNTFQMTDDILMDRIFRAFDTDNDSNISMEEWIMGLSVFLRGTLDEQARYCFNVYDLNSDGYITREEMYHMLKHSLIKQPTEEDPDEGVKDLVEIILKKM 496
            +K   KL + + ++  HF++ EV  L+ +F   V G  ++     +DR  FR +LH TF MTDD++MDR+FR FD DND  +++ EWI GLS+FLRG+L+E+ +YCF V+DLN DG+I++EEM+HMLK+SL+KQP+EEDPDEG+KDLVEI LKKM
Sbjct:    3 RKKLQKLTDTLTKNCKHFNKFEVNCLIKLFYDLVGGVERQGLVVGLDRNAFRNILHVTFGMTDDMIMDRVFRGFDKDNDGCVNVLEWIHGLSLFLRGSLEEKMKYCFEVFDLNGDGFISKEEMFHMLKNSLLKQPSEEDPDEGIKDLVEITLKKM 157          
The following BLAST results are available for this feature:
BLAST of TCONS_00021187 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EFCB16.066e-5554.19EF-hand calcium-binding domain-containing protein ... [more]
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