XLOC_009196 (gene) - C. hemisphaerica

Overview
NameXLOC_009196
Unique NameXLOC_009196
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000240:86101..96116+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_009196 ID=XLOC_009196|Name=XLOC_009196|organism=Clytia hemisphaerica|type=gene|length=10016bp|location=Sequence derived from alignment at sc0000240:86101..96116+ (Clytia hemisphaerica)
CTTCATCTTTCTGTTTCTAAAGCAACTATAAGGTGGGTCAGTAAAGTTAG
ATATTTCCTAATTGTGAAACAGACTGTCAGATTATTGAATAGATCTTTTG
CTAGactcaatctgtcaatcatcaTCATATCATACAGAaaactccagcat
aaaaacaatgaatgaTGGGAAAAAAGTTTGCACACAATTATAATACATGC
TGGTGTTTTTATTTATCCAACAGTCCAACATGACATTACTTCAGAAAAAG
GTCTGTATAGATAGTATAGTGTGGTGTGTGTAAAAAGACAGAGACTATTT
TGGGTTAAAAATCAGTTGCACATGTCATGGTCCAGTTTGGAAATTGTGTC
TTGTGCTCCGGATATCTCCAGCATAGATTTGATTGAGGTCTGAGAtcggg
aggtcgtcagtagtccgacactttctagtccgacagtaaaaatgccCGAC
TTTGGATTTGACAAAtgtgtcagtattccgacaacaattttgtccgacaa
cgaaaCATATGAAACGCAATATGAATCGCCGAAGAGGAGGCACCcgaggc
acatcttttataagcaaccacgtgcttataaaaatccaaagagGTTGGGC
AcctaaacccgacttttcttaaatttttggaagTTTATTAGTATTACtat
taggctttcaagagtcaagaaattgggaGGCTGGAATTAAAGTTTGCTTG
ATTTACAACCCTTATATCATAattctgaacatgcaaaaagggacccttaa
aggcggtgcattctttttgctataataATAAATTATCTTTACTTTACTTG
GCTCTGATTTCATTGAGCACTCTGCaacatcaatcacaaacaatactata
taaattatctttaggcaaatttgattggtcctttatttctaattatgtca
aaatgccgccAAAACGAACTTCTATTAgtattatctcagtgaaaaaccct
tattcaacattcgacactaaaatctttcattttcggacaaaagtcacgtc
ggaaaaaaaacttttatattcaGACTATTATATTggcggactagaaagtg
tcggactagtgacatgcacccctGAGATCTGCTGCCCTCAACTTTTCCCA
ATTAAGTTGGTGCAGCTCCGGTGTAACATTacgttaaatcaaaacaaaaa
tggtagagtagaattgttctaccttaaaggaagaaattttggcgggaatt
taatttggcggatggccaaaaaagctttttcagagggaatttaatttggc
ggatggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNgatggacgaaaaaactaaatttggcgggaatttaatttggcg
gtcgcttaaaaatttaaccttaagatggcgtcaaaacagcgaaaaaaata
gcaaaaacaccttaaaagagatcacattttcaaaacgtttaatttggtgg
aaatttaatttggcggatggcggaaaaaataaattttggcgggaacttaa
tttggcggtcgcttaaaaatttaaccttaagatggcgtcaaaacagcaaa
aaaatagcaaaaacacctttaaaagagatcacattttcaaaatgtttaat
ttggtggaaatttaatttggcggaaaatttaaaaagttcgaaaatagtAC
AGTAATAAAAAGTGTGTTAAAAATAGTACACCAATAGGGGACGCACAATT
TGCAGGGTCACATGAGAAAGGTGTTTAAGCTGAAGGAGAGCACATACTAG
AATTGAGGTGAACAAGAGTCCAGCCGGTCGCTAGAGGAtactcgggtgaa
acaaggcatgtcccaaatatattttgcgtgacgcacaccgcttcccatta
ttcattaactttcatatatagctcaaaagaatcgtaNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNatcggccaaaaactgattttg
acgttataaaatacatcgaaaaaacacgtcaaaaagacaatttaaatgac
gtcattattgaaaaaaggcgaTAATTCCAATTAGCTTACtacaatcaaag
caaaattttgactgCAGATGTAAATTAATGATTCCAAAataatcatgaaa
aaaaaattgaaaattcatgatgacgtcagcatttcttgacgtattttaat
ttttcccgacaacaaatgacgtcattcaaattttctgaaaatttttgaac
aaatatttcagaatcattATTTTACagctccagtcaaaatttggtgttga
ttgcattttaaataaaattgaagttatcgctgtttttcaataatgacgtc
accgatatcttgagattggcataatgcaaatttttgacccagcacttttc
gaaattcgctgatatgattcttttgagaataattggaagcggtgcgcgtc
acgcaaaatatatttgggacatgccttgtttcacccgagtaATGTAGCAA
AAAACATAAGTATGAGCATAGACGCAGTGGAAAAACGGGCGCAGATTTAA
GTGTACACTAGAATATTAAGCTATGATCAATagaatttttgaattctttt
tggaattttttttcgaataattcgaataattataataattattATATATC
GAATAAGAATAATTGGAATTGaagaattgaatatatttttgctgTAGACG
TAATTTTAATCAAACCAAACGaacggtatttttaatcgaactttgtcgaa
cttaatccaactttgttggccgattaatgttcgactaagttcggttgtca
aactttaatcaaatacacacaaatttctcaaaatacaaagttcgattaag
ttcgattactgaaatcgaacttaatcgaactttttttaaagagacctcga
cagttcgattagttcaattACATTATTCAAACTTAATCAAgctaatcaaa
cttaatcaaactttgtcaagtttaatcgaacaaaaatttgagaacacCCG
AGCAACACTGACGGCCGCTCCACTTGCACGTAATTCGATTGCACTTTTTG
CCGGCCTTTGACGACACTttaaggaactttgaagcacccccaCTGGTGCA
GGCGTATACCCTCACaccccctgaccagtgggcaccgatCAAACCTCCTG
GAACCCTGGCCGGGACCCctaggggccgtccacggtTGTACCCAAATGAT
gaggtcatttttcaaaatttttcaaaattttccaatttttgccggctttt
gatgGCACTttaaggaactttgaaggacctccaatggtgcaggcgtgtac
tcTCACACCCCCTGACCAGTGAACACCGATCGGACTCCCAGGGGCCGTCC
GCagtggtacccaaaggaggtcatttttttctccaattttgaccaatttt
caagccttttaaaggcttcagatgactgatggagggtgctggctttgagg
gaaagcaaggcagagggtatccaAAGCGGTCCGAAGGGCTGTGTGGGGCT
GTAGAGGCCTCGATTGGTCCCACCAGGGCTGGTACCCAAAAGAGGTCATT
TTTCGTGAATTTTGCCAGCTTTTGacaacactttgaggaactttgaagga
cccccaacggtgcagacgtgtactctcacatccccctgaccagtgggcac
tAATAGGACCCCTGGGACCTCGGCTGGGACCCCCAGGGGCTGTCCATGGT
AGTACCCGAAGGAGGTCATCTTTTGTTGTCGAACTTTTTCGAacggagtt
ttttgtcgaatttgtcaaaccTTTCTTGTTGTTGAACTTTATCAAacgga
gttttttgtcgaatttttggaacatttatcgttgtcgaactttgtcgaac
ttaatatgttttgtcaaacttaatcgaatactcacaattttagcaacttt
tgaaaagttcgaataaagaatttaatcgaacttttgttgttcaattaagt
tcgacaaagttcgattagttcggtaatcTTACAGCTGTGAGAGCGGAggt
gcgtagttgtattttaatgagcAGCCatgtctttcatttgagggatgcat
gttagcctccactgatgcaagttacccaatctcacggtaagtaagtcagc
aataaaaaaatattattctgCTATCTTTGATTTTGTatagggccattcca
gaatttgtctgtaacagggggctGAAGACTGAAGACTGGATTTCCAACGC
ATTTTGGGAAAGTATatacatggatttttatcggaatttctgACCAccac
tggagaaaaaaattatttctacagaggctagaaaaaaattaaaaatgtac
cgtgagtggtcctaaatccgacagccctgcctaaacccgccccccccccc
caaataactgtaaTGAAAATAATTCTGTGCTTACAGTACAAACATTctct
ctccaagttgaacaataaactattggaAGAACTGcaataatgtcaagatg
tcaattaatgtgattaAAAActtgtgagttgtaaaaataattacctctat
tctGCATTCGGCCTAAATGTGTGTTTAACCTTGCTATTATATTAGCCCTT
AGATTTGGTCCATGGGATATTGGCCTTACGGAGTTGCTGAATTTGACCTG
AATAATCCAGTTACAGATCGCCATGGTGCTATAAAGTATTAGGGTTTTGT
TTTGGTTATGGAGCAGATGATTTCTGGCCCAAATGGCTGgagtaccgtat
tacttcgaataaatgcctacctcgaataaacaccctcctcgaataaacgc
ccctcttataaggaaaattatttataaaCACCCCCTCAAATAAACCCCCC
TTCTAATGAACACCTCCTCTAGGGGAGGGgtgtttattagaaacttgtga
cttcaataccagtgttgattgggtctgaaaaggaagattttagtaatttc
ttgtaaccagagcagttttcaatgcaattttaatcgttgaaccaaagaaa
ttttatttgctctaaatattcgactttagactaaaataattcaataaatt
CGAGGGaggtttattcaaagtaatacggtaatTTGATATGCGGAAGTGAG
TCAATAGGTCGTCGCATTCTGACAGTCTGACATTAAAATGGTATTGCGCT
TAGTAAAAGATCTATTGTTCATTTGTTATCACTGGTTCAGTAGATTTTCT
GTTTCAGGCGCAGTGGCATCGGGggccacattttttcaaagtgaaaagaa
aatttagtaATCAAGCCAAATTCTGTTTGATAACCTTAAAACAGAACTGG
TTTAGGCAATCTGGAAGggctaaaactcaaaaacttttGTCCGTCAGCGC
CAACGATGGTAGCACCTCCTTCGTCAGTATATCAtggccctatcactttc
aaagtggagccgGGGTCCCTGTTTATGtattagtttattttatatcaTTG
CACAGATTTTATACTTTCACATACCAGTTTCATACTTTTCAAATCACatc
tttttacaatattttatctgtggtggtgtctaattaacACTGTTTAGCCT
ATCTGCACAACCCTATTTCAATCATAGAGGAGGATATGTTTGTAAAtagc
cgaaatcctgtgtaggttgaAAACTGAAGAACATTTCATGTGTTTTGAGA
AAGTTCCTTTTTACTCATATCGAGTTGCTACTTATTTCCATCTCGAGTTA
CATTCTTCCAGTCATTTTAGatctttattttttactttgatGGGTCTTGA
TTTCAtcatattttttccatttcattcCATAGCCTTTTTGTGGATATTCA
TTCTAGATATTTGTTGTGATCTGTCTTGTCCTTTCGTTTTGTGGGTTTTG
TTTCTGTATTTCCATTTGAATAGTCGAGGTTtcatacttctagactatat
atcaTTTTCCAGATGATTTTAAGGTTCAATCTAAAAATAAGTGCCTTGGA
AaactcaaaatctttcaattctgTTCTGTTTTTAAGATAGGCCATTTTGT
CATAGGGAAAACATTGTATATTCCTCTGTATGACAAATGACAAATCTCAA
CTTCAAAGATCGAGCCTTGCATCATGTGTATATTGCTGCAGGTTTGGTCT
AGTCCAGACTCTCCCACTCAATACAATCAtttacaaaaactttttccaat
tgaaaaaaaaggtgaatTGGATATCGATTGATTCTGGCAATTGATGGACA
ATCGATAATCAGGATTTCAAGTGAGGCTAAATTATAAATGTGTATATTGC
TGCAGCTTTGGTCTAGTCCAGACTCTCCCACTCAATACAATCAtttacaa
aaactttttccagttgaaaaaaaaaggtGAATTGGATATCGATTGATTCT
GGCAATCGATGGACAATCGATAATCAGGATTTCAAGGGAGGCTAAATCAT
AAATGTGTATATTGCTGCAGCTTTGGTCTAGTCCAGACTCTCCCACTCAa
tacaatcattttcaaaaactttttccaattgaaaaaaaaaggtgAATTGG
ATATCGATTGATTCTGGCAATCGATAGACAATCGATAATCAGGATTTCAA
GGGAGGCTAAATTGCCTTGGCTATTCATCGATTGGCTCTAAGGTCACATT
CAAAAGCCAATTGATGAAAAAACAATCAGTTAACAATTACTCAAGAATCT
AGAATACCGTAACTTgttctaatgtcgacatccctgtTCTAATCTCatca
cccttctttagagatactatgaataataggaaggtcagaatccctgattg
aaactaattttttttgcttaggcatcagttgaggagtccatcagtgtttc
cgaccttcctattgctcctatctctaaagaaggatgtcgaaattagaaga
ggagtgtcgacattagaccatcTAATGGTAGACTGACATTAGACTATCTA
ATGGTAGACTTGCTTTCTAGATTATCAGTATTAGTCATTGAATGGTTATT
TGTTGgttattaattaaaaaaatttattgtgtATCAAGTTAGAGAGTCTC
ACTTAGTATGCTACGCTATTTTAATAAAACCTTGTAAATGACtaatgatg
ttgttttttctgaaagctagaacttttatttatatttaaaaGAATACCTC
AAAATACACTATTCTTTAACATTTTCGTAATCACAATGTCattttgaata
ataaaaaaCAGCAGATCAATCCGGCATCATAAACAACGATATGAAAAAAT
TATTACACACTTCTAGTTATACCTATTTATATTATGAGTGTGTAATTGTT
TAATGTTGAAGTTTTAAATTATTCAGACATTGTGATTAGGAAAAGGTCTA
TATCTATATGAAACATATCTCTCAAAAAAGGTTCTTGCACCTATGACTTT
AGTATGAGAATTGTCTTATGTGCTTTCTATAGAAATAGCAGTGAAAATAA
AGGCTAATATAGATTTAGATTTATCACAAAGAGGATGTCAAGAAGAGATC
TTTTATCAAGACACGAAACAGTTGCCAAATTTGATGGTTTGGAACAACAG
CAATGTTTTTTCATGACTGCATTTTGCCCTGATCAATGTGGTCACGGTGG
AACAAATGGTGTCTTTTCAGTTGTCAAATATTTGAATTATGAAAAACCTG
GAGAATATGGAGATGAAAAAGGTGAGAAGCATTATGTTAGGGTCACTGAT
CCTGTGGAAGCTTCTGGCTTAACACCTGAACGAAAATCAGTGTTGGAAAG
TTTGAAAGGTGGGGATTATGTGTTGTTATCATGGAACCATGATTATGTTC
ACACTGAAGGTTGTTCGTCTCCAGAAAGACCAATCACAAAATTGGTCAAG
ATTTCCAAAGAGGATGCTGacaaaatgtaactttttcaCTGAttagagaa
aaagatttttatttctctatcattgttttataATATGGCCtgggattttt
tttattgtttctgTTATCATTGTTGCACATGGACCTTCTTGCTTTTGATG
CTCTGGGTACTGGGTAAAAACAGATTAAATGGGATTTTTTAGCTTTAAAT
TGTTGGAATCTATTATAACACAATAGTCTTTGGGTAGTGTTAGATTGAAT
AAGGTCTTGTTGGCTTCATAACATAAAGTTTTCACAATCATAATAGTTAT
AACaatttagaaatagaaaaaaggtTGATAATTTTATATgtaataaattt
tgtaaatttggtgaattactttttttttttaagatgattATATATTAAGT
AGACTTTAGATGTATTTATGAACTAGCTCTAATTCTAAAACAAGTTCTAG
TATTGCTAGGCCTGGTCATTTTCATGTTGAAGAGGGCGAATATCTTCTTG
TGCATATTTTGATATAATTATAAAGCTATATGTAAAGTATTAGTTTTGTC
TTCTCATAAATAATTTTGTGGGTCAGCGAGAAATAAACGTAAAACTATAT
TAAGTTGAAATTTGTTTCACTTTTCACATTGTTATCTTTATGTTTatcag
ttgaaaataataatatgTCAACAAGAGATTTACTGGCAAAACATGAAACT
GTAGCCACATTTAATGGATTGGAGGATAGGCCATGTTTTTTTCGAACATC
ACGTTGTCCTAATGAATGCGGTCACGCTGCAACCCTTGCAGTCTTCCATG
TCATCAAATATTTGAATTATGAGAAACCTGGAAAATATGGAgataaaaaa
caagaaaagttTCATGTGCGACCATCTGATTCTGTGGAAATTTCTGGCCT
AACACCTGATCGAAAATCAGTGTTGGAAAGTTTGAAAGGTGGGGATTATG
TGTTGTTATCATGGAACCATGATTATGTTCACACTGGAGGTTGTTCGTCT
CCTCAAAGACCAATCACAAAATTGGACAAGATTTCTAAAGAGGAAGCTGA
tgaaatgtgatttttttccTTTCCTGTAAATATTGACCAGGATTTAGAAT
AGATAATCATAGAcgcaaaaatttacaaatatttttaaagcacTATCTTT
TTACCAGACACTTGTACACTTTATGATCGTTAATTATTGACGCGTTATTA
AAATTGTTATGATTATTCATATTTGGGAggcatttttcatatttttgatt
tttttcattgtatAATCAATCATAATAATcaagaatttattattttaggA
GACTCATTATGAGACAAATGAGATCAAACTTAAGACAATAATGAACTTAC
TCTTTCAAAGTTGCAATTGTACTGTCTAGCATGGATAATGGTTGACCTGT
TTTTCTAATATTGGACAAGAATTCTTGAGAAGTTTACTTAtttaattaat
ttcaaatttacTTTGATAAAGCAGTTTTTATTTAtgaattgtaaaaatat
taccACGCTAACGTATCATGCACAAAATTTTGTATCTAATAGTATGTTTT
TATACTAGTTTATActttattttgcataaattagGTACCCTTTAGCTTCA
ATCAAACTAGTAAATCTTGAGCAAATTTAAATTACACAatcataatttct
ttatttcattttattggTTATATTGTTTTTCTTGTGATCATACTGTGAGA
CAGTGGTAGCTAAATCCTGAAGctgttgatatttttatctccCAATGTAT
ATAATTTCATTCATATCTCGTATGTTTACTAGGTcaaaataattatcaaa
aatgcaaaaaagagATTTACTGTCAAAACATGAAACTGTAGCCACATTTG
GTGGATTGGAGGATATGCGATGCCGTCATTTAACAGGCCGTTGCCCTGAT
CGATGCGGCCATGGTGGTATTATTGCGGTCTTCCCTGTCGTGAAATATTT
GAATTATGAAAAACCTGGAGAATATGGAGATAAGAAACAAGAAAACTATC
GAGTACGACCATCTGATCCTGTGGAAAAATCTGGCTTAACACCTGAACGG
AAAGCTGTTTTGGAAGGTTTGAAGAGTGGGGATTATGTTTTGTTATCATG
GAACCATGATTATGTTCACACTGGAGGTTGTTCGTCTCCTCAAAGACCAa
tcacaaaattggtcaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00016462TCONS_00016462Clytia hemisphaericatranscript
TCONS_00016463TCONS_00016463Clytia hemisphaericatranscript
TCONS_00016464TCONS_00016464Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00016462-proteinTCONS_00016462-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000240supercontigsc0000240:86101..96116 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
117.48	130.23	122.01	114.14	66.2	56.31	110.77	115.2	101.56	80	81.28	67.51	82.87	69.14	73.81	81.33	77.29	78.59	128.05	167.34	105.53	99.58	79.71	88.02	74.55	84.5	61.8	51.67	92.63	86.29