TCONS_00016463 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016463
Unique NameTCONS_00016463
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length777

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016463 ID=TCONS_00016463|Name=TCONS_00016463|organism=Clytia hemisphaerica|type=transcript|length=777bp
ATTTATATTATGAGTGTGTAATTGTTTAATGTTGAAGTTTTAAATTATTC
AGACATTGTGATTAGGAAAAGGTCTATATCTATATGAAACATATCTCTCA
AAAAAGGTTCTTGCACCTATGACTTTAGTATGAGAATTGTCTTATGTGCT
TTCTATAGAAATAGCAGTGAAAATAAAGGCTAATATAGATTTAGATTTAT
CACAAAGAGGATGTCAAGAAGAGATCTTTTATCAAGACACGAAACAGTTG
CCAAATTTGATGGTTTGGAACAACAGCAATGTTTTTTCATGACTGCATTT
TGCCCTGATCAATGTGGTCACGGTGGAACAAATGGTGTCTTTTCAGTTGT
CAAATATTTGAATTATGAAAAACCTGGAGAATATGGAGATGAAAAAGGTG
AGAAGCATTATGTTAGGGTCACTGATCCTGTGGAAGCTTCTGGCTTAACA
CCTGAACGAAAATCAGTGTTGGAAAGTTTGAAAGGTGGGGATTATGTGTT
GTTATCATGGAACCATGATTATGTTCACACTGAAGGTTGTTCGTCTCCTC
AAAGACCAATCACAAAATTGGACAAGATTTCTAAAGAGGAAGCTGAtgaa
atgtgatttttttccTTTCCTGTAAATATTGACCAGGATTTAGAATAGAT
AATCATAGAcgcaaaaatttacaaatatttttaaagcacTATCTTTTTAC
CAGACACTTGTACACTTTATGATCGTTAATTATTGACGCGTTATTAAAAT
TGTTATGATTATTCATATTTGGGAggc
Run BLAST on NCBI

transcript from alignment at sc0000240:93375..95181+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016463 ID=TCONS_00016463|Name=TCONS_00016463|organism=Clytia hemisphaerica|type=transcript|length=1807bp|location=Sequence derived from alignment at sc0000240:93375..95181+ (Clytia hemisphaerica)
ATTTATATTATGAGTGTGTAATTGTTTAATGTTGAAGTTTTAAATTATTC
AGACATTGTGATTAGGAAAAGGTCTATATCTATATGAAACATATCTCTCA
AAAAAGGTTCTTGCACCTATGACTTTAGTATGAGAATTGTCTTATGTGCT
TTCTATAGAAATAGCAGTGAAAATAAAGGCTAATATAGATTTAGATTTAT
CACAAAGAGGATGTCAAGAAGAGATCTTTTATCAAGACACGAAACAGTTG
CCAAATTTGATGGTTTGGAACAACAGCAATGTTTTTTCATGACTGCATTT
TGCCCTGATCAATGTGGTCACGGTGGAACAAATGGTGTCTTTTCAGTTGT
CAAATATTTGAATTATGAAAAACCTGGAGAATATGGAGATGAAAAAGGTG
AGAAGCATTATGTTAGGGTCACTGATCCTGTGGAAGCTTCTGGCTTAACA
CCTGAACGAAAATCAGTGTTGGAAAGTTTGAAAGGTGGGGATTATGTGTT
GTTATCATGGAACCATGATTATGTTCACACTGAAGGTTGTTCGTCTCCAG
AAAGACCAATCACAAAATTGGTCAAGATTTCCAAAGAGGATGCTGacaaa
atgtaactttttcaCTGAttagagaaaaagatttttatttctctatcatt
gttttataATATGGCCtgggattttttttattgtttctgTTATCATTGTT
GCACATGGACCTTCTTGCTTTTGATGCTCTGGGTACTGGGTAAAAACAGA
TTAAATGGGATTTTTTAGCTTTAAATTGTTGGAATCTATTATAACACAAT
AGTCTTTGGGTAGTGTTAGATTGAATAAGGTCTTGTTGGCTTCATAACAT
AAAGTTTTCACAATCATAATAGTTATAACaatttagaaatagaaaaaagg
tTGATAATTTTATATgtaataaattttgtaaatttggtgaattacttttt
ttttttaagatgattATATATTAAGTAGACTTTAGATGTATTTATGAACT
AGCTCTAATTCTAAAACAAGTTCTAGTATTGCTAGGCCTGGTCATTTTCA
TGTTGAAGAGGGCGAATATCTTCTTGTGCATATTTTGATATAATTATAAA
GCTATATGTAAAGTATTAGTTTTGTCTTCTCATAAATAATTTTGTGGGTC
AGCGAGAAATAAACGTAAAACTATATTAAGTTGAAATTTGTTTCACTTTT
CACATTGTTATCTTTATGTTTatcagttgaaaataataatatgTCAACAA
GAGATTTACTGGCAAAACATGAAACTGTAGCCACATTTAATGGATTGGAG
GATAGGCCATGTTTTTTTCGAACATCACGTTGTCCTAATGAATGCGGTCA
CGCTGCAACCCTTGCAGTCTTCCATGTCATCAAATATTTGAATTATGAGA
AACCTGGAAAATATGGAgataaaaaacaagaaaagttTCATGTGCGACCA
TCTGATTCTGTGGAAATTTCTGGCCTAACACCTGATCGAAAATCAGTGTT
GGAAAGTTTGAAAGGTGGGGATTATGTGTTGTTATCATGGAACCATGATT
ATGTTCACACTGGAGGTTGTTCGTCTCCTCAAAGACCAATCACAAAATTG
GACAAGATTTCTAAAGAGGAAGCTGAtgaaatgtgatttttttccTTTCC
TGTAAATATTGACCAGGATTTAGAATAGATAATCATAGAcgcaaaaattt
acaaatatttttaaagcacTATCTTTTTACCAGACACTTGTACACTTTAT
GATCGTTAATTATTGACGCGTTATTAAAATTGTTATGATTATTCATATTT
GGGAggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009196XLOC_009196Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016463-exon-sc0000240-1491911889:93375..93909TCONS_00016463-exon-sc0000240-1491911889:93375..93909Clytia hemisphaericaexon
TCONS_00016463-exon-sc0000240-1510915933:93375..93909TCONS_00016463-exon-sc0000240-1510915933:93375..93909Clytia hemisphaericaexon
TCONS_00016463-exon-sc0000240-1575043694:93375..93909TCONS_00016463-exon-sc0000240-1575043694:93375..93909Clytia hemisphaericaexon
TCONS_00016463-exon-sc0000240-1491911889:94940..95181TCONS_00016463-exon-sc0000240-1491911889:94940..95181Clytia hemisphaericaexon
TCONS_00016463-exon-sc0000240-1510915933:94940..95181TCONS_00016463-exon-sc0000240-1510915933:94940..95181Clytia hemisphaericaexon
TCONS_00016463-exon-sc0000240-1575043694:94940..95181TCONS_00016463-exon-sc0000240-1575043694:94940..95181Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000240supercontigsc0000240:93375..95181 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.9773	30.1893	25.803	25.8129	0	0	2.34964e-06	0	10.5102	11.4757	5.70172	8.39591	10.5374	11.7849	13.814	14.0746	6.8092	9.23473	21.4002	24.429	12.3576	18.9764	22.4426	17.8488	0	0	7.52549	10.1869	13.0285	16.8326
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016463 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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