TCONS_00065535 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065535
Unique NameTCONS_00065535
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1148

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065535 ID=TCONS_00065535|Name=TCONS_00065535|organism=Clytia hemisphaerica|type=transcript|length=1148bp
tttgtaggttttactagataaaaacatgaaaatcacAATTTGTTTGGTCT
TTGGTTTGCCAGCTGTTGGTAAAACAACATTCTGTGGACAACTGATGAAC
CATCCTGGTCACACTTCCCTCAATAAATATTTATTCACATACGATGACTT
GATGTCAGAGAAATTAATCTTcgaagatgaaaattttgaaggtttATGGA
AATCACATCGTCATAAAGTCTTTCAGAATGTAGAAAATTGCATAATTCAA
ATCAAAACGGGTGATTATGAACGTAACGTTTTTAAGGAACTGTGTACatg
ttttcaaaatggtagcacGGGTTGTGATGAGCATGTTTTGTTCATTGATG
ATAACTTCTTTTACAGTAGCATGCGGTATGCTTATTACCAACTGGCTCGT
AAAATGGCATGcagtttttgtcaaattttcattaaagctcCAGAAGATTT
AGATTTACTTTTCAAACGGAATAAAAATCGGAAATCGTCTGTCCCGGAAG
AAACAATACGGAAAATGAGCCGGTTATTCGAATCACCGGACCCAGGATTG
AACCATTGGGAGAAAAATACGActtcttttgattgttttgaccTTCATAC
AAACAACAGTGATTGGTTTTCTTTGAAAGTATTCGATTTTGTTAACCGTT
GCTCTTTGGAAATTGTGCCACCTGTTCTCACGGAAGAAGAAATAGAGGAA
CGTCGATTAAACCGGCAGAAAAATCTCGAGAATTATTACCATCAATGTGA
TCAACTTCTAAGAAAACATGTGTCTAAAGAAATGGCAAtcgctaaaaatg
aaaaaatgatgaataagAACGAATTGAAGGAATTGGCGAAATTATTGAAT
GATCGCAGAAAGaaatatttgacgaaaattCGCGACGGAAATGCTATTCG
CGTTGACGAGgatgaaattattttgtttgatGAGAAATGGTTGAAtactg
aaaatgagaaaatagaAATGTTCTTTAAAGAATGCACTCTTTTagaagaa
ctttaaaaagaccGTGAATTCTTCCACGTTTCatcttttaaaagtcaaag
ttGTTTCAACATTAGGATTTCTGTAAAATAAATTCTGAATGAATGTCCTT
TTTACTATAAAAATGTTTCGAAGGTCTGTTTTTATTAACATGAACGGG
Run BLAST on NCBI

protein sequence of TCONS_00065535-protein

>TCONS_00065535-protein ID=TCONS_00065535-protein|Name=TCONS_00065535-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MKITICLVFGLPAVGKTTFCGQLMNHPGHTSLNKYLFTYDDLMSEKLIFE
DENFEGLWKSHRHKVFQNVENCIIQIKTGDYERNVFKELCTCFQNGSTGC
DEHVLFIDDNFFYSSMRYAYYQLARKMACSFCQIFIKAPEDLDLLFKRNK
NRKSSVPEETIRKMSRLFESPDPGLNHWEKNTTSFDCFDLHTNNSDWFSL
KVFDFVNRCSLEIVPPVLTEEEIEERRLNRQKNLENYYHQCDQLLRKHVS
KEMAIAKNEKMMNKNELKELAKLLNDRRKKYLTKIRDGNAIRVDEDEIIL
FDEKWLNTENEKIEMFFKECTLLEEL
Run BLAST on NCBI

transcript from alignment at scaffold_44:74915..76062

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065535 ID=TCONS_00065535|Name=TCONS_00065535|organism=Clytia hemisphaerica|type=transcript|length=1148bp|location=Sequence derived from alignment at scaffold_44:74915..76062 (Clytia hemisphaerica)
CCCGTTCATGTTAATAAAAACAGACCTTCGAAACATTTTTATAGTAAAAA
GGACATTCATTCAGAATTTATTTTACAGAAATCCTAATGTTGAAACaact
ttgacttttaaaagatGAAACGTGGAAGAATTCACggtctttttaaagtt
cttctAAAAGAGTGCATTCTTTAAAGAACATTtctattttctcattttca
gtaTTCAACCATTTCTCatcaaacaaaataatttcatcCTCGTCAACGCG
AATAGCATTTCCGTCGCGaattttcgtcaaatatttCTTTCTGCGATCAT
TCAATAATTTCGCCAATTCCTTCAATTCGTTcttattcatcattttttca
tttttagcgaTTGCCATTTCTTTAGACACATGTTTTCTTAGAAGTTGATC
ACATTGATGGTAATAATTCTCGAGATTTTTCTGCCGGTTTAATCGACGTT
CCTCTATTTCTTCTTCCGTGAGAACAGGTGGCACAATTTCCAAAGAGCAA
CGGTTAACAAAATCGAATACTTTCAAAGAAAACCAATCACTGTTGTTTGT
ATGAAggtcaaaacaatcaaaagaagTCGTATTTTTCTCCCAATGGTTCA
ATCCTGGGTCCGGTGATTCGAATAACCGGCTCATTTTCCGTATTGTTTCT
TCCGGGACAGACGATTTCCGATTTTTATTCCGTTTGAAAAGTAAATCTAA
ATCTTCTGgagctttaatgaaaatttgacaaaaactgCATGCCATTTTAC
GAGCCAGTTGGTAATAAGCATACCGCATGCTACTGTAAAAGAAGTTATCA
TCAATGAACAAAACATGCTCATCACAACCCgtgctaccattttgaaaaca
tGTACACAGTTCCTTAAAAACGTTACGTTCATAATCACCCGTTTTGATTT
GAATTATGCAATTTTCTACATTCTGAAAGACTTTATGACGATGTGATTTC
CATaaaccttcaaaattttcatcttcgAAGATTAATTTCTCTGACATCAA
GTCATCGTATGTGAATAAATATTTATTGAGGGAAGTGTGACCAGGATGGT
TCATCAGTTGTCCACAGAATGTTGTTTTACCAACAGCTGGCAAACCAAAG
ACCAAACAAATTgtgattttcatgtttttatctagtaaaacctacaaa

Coding sequence (CDS) from alignment at scaffold_44:74915..76062

>TCONS_00065535 ID=TCONS_00065535|Name=TCONS_00065535|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at scaffold_44:74915..76062 (Clytia hemisphaerica)
ttaaagttcttctAAAAGAGTGCATTCTTTAAAGAACATTtctattttct
cattttcagtaTTCAACCATTTCTCatcaaacaaaataatttcatcCTCG
TCAACGCGAATAGCATTTCCGTCGCGaattttcgtcaaatatttCTTTCT
GCGATCATTCAATAATTTCGCCAATTCCTTCAATTCGTTcttattcatca
ttttttcatttttagcgaTTGCCATTTCTTTAGACACATGTTTTCTTAGA
AGTTGATCACATTGATGGTAATAATTCTCGAGATTTTTCTGCCGGTTTAA
TCGACGTTCCTCTATTTCTTCTTCCGTGAGAACAGGTGGCACAATTTCCA
AAGAGCAACGGTTAACAAAATCGAATACTTTCAAAGAAAACCAATCACTG
TTGTTTGTATGAAggtcaaaacaatcaaaagaagTCGTATTTTTCTCCCA
ATGGTTCAATCCTGGGTCCGGTGATTCGAATAACCGGCTCATTTTCCGTA
TTGTTTCTTCCGGGACAGACGATTTCCGATTTTTATTCCGTTTGAAAAGT
AAATCTAAATCTTCTGgagctttaatgaaaatttgacaaaaactgCATGC
CATTTTACGAGCCAGTTGGTAATAAGCATACCGCATGCTACTGTAAAAGA
AGTTATCATCAATGAACAAAACATGCTCATCACAACCCgtgctaccattt
tgaaaacatGTACACAGTTCCTTAAAAACGTTACGTTCATAATCACCCGT
TTTGATTTGAATTATGCAATTTTCTACATTCTGAAAGACTTTATGACGAT
GTGATTTCCATaaaccttcaaaattttcatcttcgAAGATTAATTTCTCT
GACATCAAGTCATCGTATGTGAATAAATATTTATTGAGGGAAGTGTGACC
AGGATGGTTCATCAGTTGTCCACAGAATGTTGTTTTACCAACAGCTGGCA
AACCAAAGACCAAACAAATTgtgattttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041066XLOC_041066Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065535-proteinTCONS_00065535-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065535-exon-scaffold_44-1491911889:74915..76062TCONS_00065535-exon-scaffold_44-1491911889:74915..76062Clytia hemisphaericaexon
TCONS_00065535-exon-scaffold_44-1510915933:74915..76062TCONS_00065535-exon-scaffold_44-1510915933:74915..76062Clytia hemisphaericaexon
TCONS_00065535-exon-scaffold_44-1575043694:74915..76062TCONS_00065535-exon-scaffold_44-1575043694:74915..76062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:74915..76062 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.42302	6.00555	4.27793	4.4364	4.94232	2.69761	4.37178	4.63851	2.51525	1.85355	2.98574	2.28983	3.4174	5.14084	3.47557	4.30541	3.80066	5.1747	2.81145	1.76519	2.26487	2.77963	18.8878	13.8634	4.42163	6.69767	1.96868	2.54335	8.42906	10.8951
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013641KTI12/PSTK
IPR027417P-loop_NTPase
Blast
[Close]
BLAST of TCONS_00065535 vs. Swiss-Prot (Human)
Match: PSTK (L-seryl-tRNA(Sec) kinase OS=Homo sapiens GN=PSTK PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 6.049e-26
Identity = 81/284 (28.52%), Postives = 129/284 (45.42%), Query Frame = 2 
Query:   17 DKNMKITICLVFGLPAVGKTTFCGQLMNH-PGHTSLNKYLFTYDDLMSEKLI--FEDENFEGLWKSHRHKVFQNVENCIIQIKTG-------DYERNVFKELCTCFQN-----------------GSTGCDEHV-LFIDDNFFYSSMRYAYYQLARKMACSFCQIFIKAPEDLDLLFKRNKNRKSSVPEETIRKMSRLFESPDPGLNHWEKNTTSFDCFDLHTNNSDWFSLKVFDFVNRCSLEIVPPVLTEEEIEERRLNRQKNLENYYHQCDQLLRKHVSKEM 784
            D   K  +C++ GLPA GK+TF   L +           +  YDD+M +  +           WK  R ++ + +E  ++ +  G       +    ++++  TC ++                   T     + L +DDNF+Y SMRY  YQLARK +  FCQ+F+  P  L+   +RN  R  ++P ETI  M R  E P+P  N WE N+ +       +      SL+V D +   +LE  P    E+ +E++  +R     N  H+ DQ LR+ VS+ M
Sbjct:   13 DGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMPDAFLAGARARPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLIFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCP--LETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEA----SLEVTDLL-LTALE-NPVKYAEDNMEQKDTDRIICSTNILHKTDQTLRRIVSQTM 288
The following BLAST results are available for this feature:
BLAST of TCONS_00065535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSTK6.049e-2628.52L-seryl-tRNA(Sec) kinase OS=Homo sapiens GN=PSTK P... [more]
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