TCONS_00059818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059818
Unique NameTCONS_00059818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059818 ID=TCONS_00059818|Name=TCONS_00059818|organism=Clytia hemisphaerica|type=transcript|length=2558bp
tgggactgtcatatttgtccgaaaatcacaccaaaatatccaaaaaaaat
tggcacctatgttattttgattcccttacctttccaaaaaatgtaaaaca
agtgctttgaccgaGAGGAAGTTGTGACTTGGAttgtgaagaaaaaaata
gatGTACTTTAgccatttctaaaaaatctaaaatttcgttttttcaaaaa
atctaaaattccgcaaaaataatcaaaaagtaTGAATGTTACGATATTTA
AACTACGGAAGGCAAAACATTTTTCAGCCTTGAGCAAAATGAGAGAAATA
TCTTCGTTACTTGTTAACACATCAACTGTCAATAGCATCTCTTTCAGCGA
TAAGTGTAAACGctttgctttcttttttttcctatTTGTAGTgtctaaat
ttgaaataaaaatagtgTTTTAAGACACCACTGAATAACCTATTGTTCAA
TTTACACAATTTCAATAATGCACCCCAAATCTACCAAGTATTTAATTTGT
AAGTGGATGAGAAATAAAGTCATTTTAAGCTGAATGTAacatattttttg
gaatttaacTAAATATCTCCTCAGGAACATATTCAGTAGTTGTGGTCGTG
CttgttgttgtagttgtagGTGTGGTCGTTGTGGTTGTAGGAGTGGTCGt
tgtggtcgttgttgtagtcGGAGTGGTTGTTGTGGTTGTAGGAGTGGTCG
TTTTCGTTGTTgtaggagtggtcgttgtagtAGTTGGAGTAGTCGTTGTC
GTTGTAGGAGTGGTCATTGTAGTTGTAGGTGTGTTCTTTGTTGTAGTTGT
AGTTGTAggtgtggttgttgttgttggagtggtcgttgtggttgtaggag
tggtcgttgtagttgtaggagtggtcgttgtagtagttggagtggtcgtt
gttgttgttgtaggagtggtcgttgtaggtgtggtcgttgttgtagttgg
agtggtcgttgtggttgtaggagtggtcgttgtagtagttggagtggtcg
ttgtagtagttggagtggtcgttgtagtagttggagtggtcgttgtagta
gttggagtggtcgttgtagtAGTTGGAGTAGTCGTTGTCGTTgtaggagt
ggtcgttgtagttgtagttgtaggagtggtcgttgtagtagttggagtgg
tcgttgtagtagttggagtggtcgttgtagtAGTTGTAGTTGTAggtgtg
gttgttgttgttgtagttgtaggtgtggttgttgttgttgtagttgtagG
TGTGGTTGttgtggtcgttgttgttgtagttgtaggtgtggtcgttgttg
tagttggaGTGGTCGTTGTGGTTGTAGGAGTGGTCGTGGTAGTTGTAGGT
GTGGTCGTTGTAGGTGTGGTCGTTGTAGTTGTAGGTGTGGTCGTTGTCGT
TTTTGTTGTAGGAGTGGAAGTTGTTGTAGTTGTAGAAGTGGGAGTGGTCG
TTGTAGTAGTTTGAGTGGTCGTTGTAGTAGTttgagtggtcgttgttgtt
gtaggCCTGGTCGTtggagtggtcgttgtagttGTGGTCGTTTTCTTTAT
CAAACACTCGTCATTTCGACAATACCTAGCGTAGTAACAATATTGATTGC
AATAGTCTGCCACAATTCTATCTCGATAAAGCCCACGGTCAATGTAACGA
GAATTAGGACCTGTCCAGCTCCATTTACATAAGCATTCACCAGTAGTCAA
ACATTGACCTTTACCAAACAAATGACATTTAACGTTGCATTTCTTTTTCG
GTTTCGGCGTAACCACGCTTACACATTTAGGGTTTCGATACCACCTGTTG
TAGTGACAGGATGTCGTACAATAATCAGCTGTGATGCGGTTTCGATTCGT
ACCTTTGTTAACATATTGTGAATTAGGACCCGTACATTTCCATCTGCATA
AGCAGCGACCGTTCGGTAAACACCGGCCGTACGCTTTATTGTTTTTTTCG
CATCTAGAATGACATTTGGTTGATGGAGCTTTGGTTGTTGTCGTTGTagt
ggtggtcgttgtcgtCGTGGGTTTTGAAGTTGTCGAAAGAAAGGGTGTAC
AGACACGTGACCACGAAGGCGTGTAGTGACATGGTACTCGACAATGATCT
GCTTTAACTCTCTTATCTAGTGACCCTCCAGTGAGAGATACTGCATTAGG
TCCAGTCCATCCCCACCAACATAGGCAACGACCATCAGGTTGACAGACAC
CAGTACCTGGTGTAGGATGCTCACAGCGTTGGTCGCAGTGTCTCCTGACT
CTGCCTCGATGACTGCCAACAACTTGACGTGTTCTATATCTCCTTGACGA
GTGACCATAGCTATGGTATCTTGCCAAAACTATACCAATGCATAATGCAA
AGATAATTGTGATTAAGGTCGACTggttcatttttgaaatcagcCACGAC
AATGTCTTGATTTAAAGtgacaagtaaaaaaaattctgaattcTCCCTTT
AAAATCCAACAGTTTTGTAAACCGCTTGTAGTTCTTGTGAACCTCTTGTG
AACCTTCTTTTCAGCTAGTCAAATACGGAAATGaagtgattttgaaaaat
gtccaaat
Run BLAST on NCBI

transcript from alignment at scaffold_331:670041..672820+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059818 ID=TCONS_00059818|Name=TCONS_00059818|organism=Clytia hemisphaerica|type=transcript|length=2780bp|location=Sequence derived from alignment at scaffold_331:670041..672820+ (Clytia hemisphaerica)
tgggactgtcatatttgtccgaaaatcacaccaaaatatccaaaaaaaat
tggcacctatgttattttgattcccttacctttccaaaaaatgtaaaaca
agtgctttgaccgaGAGGAAGTTGTGACTTGGAttgtgaagaaaaaaata
gatGTACTTTAgccatttctaaaaaatctaaaatttcgttttttcaaaaa
atctaaaattccgcaaaaataatcaaaaagtaTGAATGTTACGATATTTA
AACTACGGAAGGCAAAACATTTTTCAGCCTTGAGCAAAATGAGAGAAATA
TCTTCGTTACTTGTTAACACATCAACTGTCAATAGCATCTCTTTCAGCGA
TAAGTGTAAACGctttgctttcttttttttcctatTTGTAGTgtctaaat
ttgaaataaaaatagtgTTTTAAGACACCACTGAATAACCTATTGTTCAA
TTTACACAATTTCAATAATGCACCCCAAATCTACCAAGTATTTAATTTGT
AAGTGGATGAGAAATAAAGTCATTTTAAGCTGAATGTAacatattttttg
gaatttaacTAAATATCTCCTCAGGAACATATTCAGTAGTTGTGGTCGTG
CttgttgttgtagttgtagGTGTGGTCGTTGTGGTTGTAGGAGTGGTCGt
tgtggtcgttgttgtagtcGGAGTGGTTGTTGTGGTTGTAGGAGTGGTCG
TTTTCGTTGTTgtaggagtggtcgttgtagtAGTTGGAGTAGTCGTTGTC
GTTGTAGGAGTGGTCATTGTAGTTGTAGGTGTGTTCTTTGTTGTAGTTGT
AGTTGTAggtgtggttgttgttgttggagtggtcgttgtggttgtaggag
tggtcgttgtagttgtaggagtggtcgttgtagtagttggagtggtcgtt
gttgttgttgtaggagtggtcgttgtaggtgtggtcgttgttgtagttgg
agtggtcgttgtggttgtaggagtggtcgttgtagtagttggagtggtcg
ttgtagtagttggagtggtcgttgtagtagttggagtggtcgttgtagta
gttggagtggtcgttgtagtAGTTGGAGTAGTCGTTGTCGTTgtaggagt
ggtcgttgtagttgtagttgtaggagtggtcgttgtagtagttggagtgg
tcgttgtagtagttggagtggtcgttgtagtAGTTGTAGTTGTAggtgtg
gttgttgttgttgtagttgtaggtgtggttgttgttgttgtaggaGTGGT
CGTGGTAGTAGTTGGAGTAGTCGTTGTAGTAGTTGGAGTAGTCGTTGTCG
TTgtaggagtggtcgttgtagttgtagttataggagtggtcgttgtagta
gttggagtggtcgttgtagtAGTTGGAGTGGTCGTAGTAGTTGTAGGTGT
GGTCGTAGTTGTAGGAGTGGTCGCTGTAGTAGTTGTAGTTGTAggtgtgg
ttgttgttgttgtagttgtagGTGTGGTTGttgtggtcgttgttgttgta
gttgtaggtgtggtcgttgttgtagttggaGTGGTCGTTGTGGTTGTAGG
AGTGGTCGTGGTAGTTGTAGGTGTGGTCGTTGTAGGTGTGGTCGTTGTAG
TTGTAGGTGTGGTCGTTGTCGTTTTTGTTGTAGGAGTGGAAGTTGTTGTA
GTTGTAGAAGTGGGAGTGGTCGTTGTAGTAGTTTGAGTGGTCGTTGTAGT
AGTttgagtggtcgttgttgttgtaggCCTGGTCGTtggagtggtcgttg
tagttGTGGTCGTTTTCTTTATCAAACACTCGTCATTTCGACAATACCTA
GCGTAGTAACAATATTGATTGCAATAGTCTGCCACAATTCTATCTCGATA
AAGCCCACGGTCAATGTAACGAGAATTAGGACCTGTCCAGCTCCATTTAC
ATAAGCATTCACCAGTAGTCAAACATTGACCTTTACCAAACAAATGACAT
TTAACGTTGCATTTCTTTTTCGGTTTCGGCGTAACCACGCTTACACATTT
AGGGTTTCGATACCACCTGTTGTAGTGACAGGATGTCGTACAATAATCAG
CTGTGATGCGGTTTCGATTCGTACCTTTGTTAACATATTGTGAATTAGGA
CCCGTACATTTCCATCTGCATAAGCAGCGACCGTTCGGTAAACACCGGCC
GTACGCTTTATTGTTTTTTTCGCATCTAGAATGACATTTGGTTGATGGAG
CTTTGGTTGTTGTCGTTGTagtggtggtcgttgtcgtCGTGGGTTTTGAA
GTTGTCGAAAGAAAGGGTGTACAGACACGTGACCACGAAGGCGTGTAGTG
ACATGGTACTCGACAATGATCTGCTTTAACTCTCTTATCTAGTGACCCTC
CAGTGAGAGATACTGCATTAGGTCCAGTCCATCCCCACCAACATAGGCAA
CGACCATCAGGTTGACAGACACCAGTACCTGGTGTAGGATGCTCACAGCG
TTGGTCGCAGTGTCTCCTGACTCTGCCTCGATGACTGCCAACAACTTGAC
GTGTTCTATATCTCCTTGACGAGTGACCATAGCTATGGTATCTTGCCAAA
ACTATACCAATGCATAATGCAAAGATAATTGTGATTAAGGTCGACTggtt
catttttgaaatcagcCACGACAATGTCTTGATTTAAAGtgacaagtaaa
aaaaattctgaattcTCCCTTTAAAATCCAACAGTTTTGTAAACCGCTTG
TAGTTCTTGTGAACCTCTTGTGAACCTTCTTTTCAGCTAGTCAAATACGG
AAATGaagtgattttgaaaaatgtccaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037627XLOC_037627Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059818-exon-scaffold_331-1491911889:670041..671262TCONS_00059818-exon-scaffold_331-1491911889:670041..671262Clytia hemisphaericaexon
TCONS_00059818-exon-scaffold_331-1510915933:670041..671262TCONS_00059818-exon-scaffold_331-1510915933:670041..671262Clytia hemisphaericaexon
TCONS_00059818-exon-scaffold_331-1575043694:670041..671262TCONS_00059818-exon-scaffold_331-1575043694:670041..671262Clytia hemisphaericaexon
TCONS_00059818-exon-scaffold_331-1491911889:671485..672820TCONS_00059818-exon-scaffold_331-1491911889:671485..672820Clytia hemisphaericaexon
TCONS_00059818-exon-scaffold_331-1510915933:671485..672820TCONS_00059818-exon-scaffold_331-1510915933:671485..672820Clytia hemisphaericaexon
TCONS_00059818-exon-scaffold_331-1575043694:671485..672820TCONS_00059818-exon-scaffold_331-1575043694:671485..672820Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:670041..672820 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.52624	2.06136	1.24677	0.825211	0	0	2.50572	4.3284	27.671	47.9565	3.70907	21.6726	3.61296	2.43489	1.11503	1.69603	0.382123	0.53081	0	0	0	0	0.476677	0.471144	0.176712	0.142552	0	0	0.075512	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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