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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053669 ID=TCONS_00053669|Name=TCONS_00053669|organism=Clytia hemisphaerica|type=transcript|length=4317bp
aaatttttgttttaggtCTAAGGGTGTCAACTTTGATAGCTATTACATGT
TTATGTTTTGGTACCGGAGTTCGTTGTATCACACCTGATCCGAAATATGC
AACACCTTTGATCCATTGCGGTCAAATCATGATCGGATTTGCAGGACCTG
TCGCGCAAGCAGCTGCCACCGCTCTCTCTAGTGTCTGGTTTCCTTCAAAC
CAACGCACCACAGCAACTGCAGTGGCTTCACTTGCAAGTTATTGTGGTAC
TGCATTGAGCTTCTTGACTGGACCATCCGTTGTGGAAGATTTTGGTGATT
ATCCCATCAGCGAGGCTCATTCTAAATACAAAGCACTTGTTGATAAGATA
TCAAAAGACATAATGCATTATTTGTACGTACAAGCCGGTGTTTGTGGTGT
TCTGTTCATACTCGTCGTATTCACATTCCCAAAGAAACCACCAAAACCTC
CAAGTGCAACTGCTACTTTGGAAAGAATGAATTTCAAAGAAGGGCTAAAG
AAGCTGTTTTTTAACCCTCAGTTTCAATTGATTGCATTTGCGTATGGATT
GACGACTGGCGTTTACAGCGCATGGTGCTCCGATCTTGCAATCAATCTTA
AAAGTTTCAACATCAACGACAAAACAGCTGGCTTCTTGGGATTCTGGGCT
GTGATTGCTGGTTCAATCTCGGGAATTTCCCTGTCCTTgATGGCGGACAA
GCTTGGTGCATTGAAGTTGTTGATCATTCTTCTGTTTGTTGTGGCGACTG
CTGGTTTCGCTGTCTTCAGCCTCATTTGCGTCAATATCGTTCCTACTTCC
ATGGCTTTGTTCTATCTGACATCCGTTGTCGGTGGTCTTTGTTTAAATGG
TTCTATCCCCTTATTTTTCGAACTAGCTGTCGAATCGAGTTACCCTGTCG
CAGAAGGTATAAACACTGGAGCTATGACCTTTTCGAACAATATTTATTGC
TTGATTTTCTTATCTTTGCCATTAATACCTAACCTGGGGACAGCATGGAT
GAATTGGTTTCTTGTAGGTAGCTGTGTGGTTTGTGTACCCACTATGTTGA
TGTTTAAAGAACGGTACCGAAGGCTTGAATTGGATATGGTTGAGGGAAAT
ACAACTAATAAAAATGAGAGTACGAATAGTTTACCATCTCCTACAAATTA
CAATACTTAAATTTATTCATTTTGCCAATTAACGAATATACTTAATGTGG
ATGGATTTTTGAATAACTTTCTAAATTATTTTGCATTTGAAGTTTTATAC
TTACTTTaaaattaatgttttaatgttttaacTGTTTTTAGTTTTAGCTT
CTActctttcgttatttttttctttcgtgAAGTTCGATGGAATTTTGATG
AATATGGGAGTTTATCAACGCAAAATACATGCTTTTGTTTAACAATTTAA
GCACGTTTTcaatttaaatttcaagaaaagaaTCATTTAAATATATTGCC
AGCCCCGACAATTATCGAAATTGAGTTCAATCCATGGAGGGGTGGACCAA
TCGACATAGTCCACCCCTCTATTATTATACGCGTATTCGAAGACAAAAGA
AGTAGTACTTATCAAGTAGTCAGTTTTGCCCTTTTATCTCATTATACAAT
ATATCTAGTTTTAGTTTGTAAAAGTtaatataataatattgaagtatttt
tatAAATAGGCACAGTTTAGATTGATAATTTTCTATAATTGAATGATAAA
TATAACAACAATTTTAGAGTCACGTGGACAGGGGAAACATTTCTACAAAA
CGACATCTTAACGGTtgagaaaaatcacaaaaatcaatcGAGAATGTTTT
CTAAGATCTCCTCTATAGTCCATCCCTTTTATGTGTTAGATACAGATAAT
CGAGTCGAATTTGTAGCAGTGTTGTTTCGTTGCATTAAACATTTTCTCTt
gttttccattaaattctattTACATtggttttgtttaaaatatgtaGAGT
AAAAAAATTCCATCCGTTATTTGTTTCAAAACTTAAAGGAGAAAACTTAA
TAGTCAGGTAATACTTTGCTTATAGGAAaactttcctaagaaatttttct
tttttccccgAGTAAGTTTCCTACTTTTCCTCAACCATAATCATCCGTTT
GTCCTTTCTTTTTTTCGAGTAGATTATTCTTCTACTTTTAATTCTTActt
ctttctgtttttttttttcattggaaaaaaatattattcGCACCCCTCTT
CCGGACCCCAACCTATCAGGATATTCTGAATTGCCGCAATAAATGATACT
TCTTCTATATCAATGTCTGTGAGTAATAAAGTCTTTCGCCCGTAATTTCA
TCATGATTTTTATCATATTGAAGCGTTGGATCCGTCTCTTCATCACTGAC
ATCACTAGAATGTTGGTCATCAGCAAATTCTTCACTCTCACCCATTGCTA
CTTCTTTTAACTCCACATCATCATTTGGAAACTCACTTCGACTTTGTCGT
TTAATTATACGTTCTCTTCGCACCAAATGTTTCTTGGCNGAATTACAATA
CTTAAATTTATTCATTTTGCCAATTAACGAATATACTTAATGTGGATGGA
TTTTTGAATAACTTTCTaaattattttgtatttgaagTTTTATACTtact
ttaaaatattcttagtttttaatgttttaactGTTTTTAGTTTTAGCTTC
TActctttcgttatttttttctttcgtgAAGTTCGATGGAATTTTGATGA
ATATGGGANTTTAACTCCACATCATCATTTGGAAACTCACTTCGACTTTG
TCGTTTAATTATACGTTCTCTTCGCACCAAATGTTTCTTGGCAACTTTAG
CCCAACATCTCAATACAACAAAAGCAGCTATCTCAATCAGAAAAAGTAAA
GAGAACCCACAAAATAGACCAATGTTTCCCCCTAAACCTCCAAGGAAATC
TCCCCAACTATACAACACTTCTTCCTGCTCTAGGTTGTAGACGTAAGGGC
TCTCGAATTTCATGCTCAACTTAAAGTTCGTTTTGTTAATGTCTTCTTTG
AAGTGATAACTTGATCCATAAATATCAAAGGAAGTTTCCTTGCATGGAAG
CTCGCAATCTGTCACCTTTCGCTCTTGGTAATAACTTTGATCTAAACATC
GATGAATTTCGAGAATACTTTTTTCAGGGTCGTGGTATTCATCAACCAAG
TCAAAGGGTAAAAAGTCTTTGCAAAAGTCATAAGTATctccacatttttt
caaagcaattATGCACCTCTTTGANCAATCCATGGAGGGGTGGACCAATC
GACATAGTCCACCCCTCTATTATTATACGCGTATTCGAAGACAAAAGAAG
TAGTACTTATCAAGTAGTCAGTTTTGCCCTTTTATCTCATTATACAATAT
ATCTAGTTTTAGTTTGTAAAAGTtaatataataatattgaagtattttta
tAAATAGGCACAGTTTAGATTGATAATTTTCTATAATTGAATGATAAATA
TAACAACAATTTTAGAGTCACGTGGACAGGGGAAACATTTCTACAAAACG
ACATCTTAACGGTtgagaaaaatcacaaaaatcaatcGAGAATGTTTTCT
AAGATCTCCTCTATAGTCCATCCCTTTTNGGTTGTGAGATAGTTGTGTTG
TAGAGGGAGGTAAACACTTTTTGGACTTACGTAGATTCGAATGTCATCTT
TCTGATGGTCAAAGACTTCTTTTTTCGTGTTCAGAATAGAAATATCAATA
TCGAACCGGTTCTCGTCATTAAAAAATGTTCCATCATAATTCCAAATCAA
ACAATTCTCGAAACTGGTTTCCACTTTGAAATACGTATTAATCAGATCAG
AGAAACTTTCACAAATACCACGTTCCTGGCATGAGATCTTAAAGTCACCG
ATTGTAATATGATTCTTTTCTACAGTTGATCGCAATGTTTCATTCCTTTC
TGTCGAATCATACTCATCTGGGCATGGTTCTTGCATATTACTATCTTGAC
CAGGGTTGCTAACGATGGCTAGATTGCAATATTTCTTTTTGCGAGGTGGC
TTCAAACATATGGTGACAGTTGGAAAGTGGTTACTATCAGTGATTATAGT
CTGCTTGTCCACTCTCACGTCCTTTTTGATATATTTGGTGATAAGTTCAC
TACTCATGTAAACTCCTATTGATATGGCAACAACTAATACGCAAAACCAA
AAGGCTCGTTCAACAGGGTTTCCAGTAAAGACTCGAGTTAATCCAATGAT
TGAGAAGTTCTCTGAATATGTGTAAGCTTTGTTCTTTATTCGAGTGATGT
CTTTACGGCTTGCACCAACTGGAAGCATACTGCCTGGAATAAAAGATTAA
ATAGTTGTGAAATGTAC Run BLAST on NCBI protein sequence of TCONS_00053669-protein >TCONS_00053669-protein ID=TCONS_00053669-protein|Name=TCONS_00053669-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp
IFVLGLRVSTLIAITCLCFGTGVRCITPDPKYATPLIHCGQIMIGFAGPV
AQAAATALSSVWFPSNQRTTATAVASLASYCGTALSFLTGPSVVEDFGDY
PISEAHSKYKALVDKISKDIMHYLYVQAGVCGVLFILVVFTFPKKPPKPP
SATATLERMNFKEGLKKLFFNPQFQLIAFAYGLTTGVYSAWCSDLAINLK
SFNINDKTAGFLGFWAVIAGSISGISLSLMADKLGALKLLIILLFVVATA
GFAVFSLICVNIVPTSMALFYLTSVVGGLCLNGSIPLFFELAVESSYPVA
EGINTGAMTFSNNIYCLIFLSLPLIPNLGTAWMNWFLVGSCVVCVPTMLM
FKERYRRLELDMVEGNTTNKNESTNSLPSPTNYNT Run BLAST on NCBI transcript from alignment at scaffold_233:627287..631738- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053669 ID=TCONS_00053669|Name=TCONS_00053669|organism=Clytia hemisphaerica|type=transcript|length=4452bp|location=Sequence derived from alignment at scaffold_233:627287..631738- (Clytia hemisphaerica)
AAATTTTTGTTTTAGGTCTAAGGGTGTCAACTTTGATAGCTATTACATGT
TTATGTTTTGGTACCGGAGTTCGTTGTATCACACCTGATCCGAAATATGC
AACACCTTTGATCCATTGCGGTCAAATCATGATCGGATTTGCAGGACCTG
TCGCGCAAGCAGCTGCCACCGCTCTCTCTAGTGTCTGGTTTCCTTCAAAC
CAACGCACCACAGCAACTGCAGTGGCTTCACTTGCAAGTTATTGTGGTAC
TGCATTGAGCTTCTTGACTGGACCATCCGTTGTGGAAGATTTTGGTGATT
ATCCCATCAGCGAGGCTCATTCTAAATACAAAGCACTTGTTGATAAGATA
TCAAAAGACATAATGCATTATTTGTACGTACAAGCCGGTGTTTGTGGTGT
TCTGTTCATACTCGTCGTATTCACATTCCCAAAGAAACCACCAAAACCTC
CAAGTGCAACTGCTACTTTGGAAAGAATGAATTTCAAAGAAGGGCTAAAG
AAGCTGTTTTTTAACCCTCAGTTTCAATTGATTGCATTTGCGTATGGATT
GACGACTGGCGTTTACAGCGCATGGTGCTCCGATCTTGCAATCAATCTTA
AAAGTTTCAACATCAACGACAAAACAGCTGGCTTCTTGGGATTCTGGGCT
GTGATTGCTGGTTCAATCTCGGGAATTTCCCTGTCCTTGTGAGTGAAGAT
TAATAAGTACTGTTTTCTATAAGACATATATTTTTATACATCCTCCTTAA
AGTAATTTCATTGTAAACTTGGTTAACTAAGATTGGTAGATAATAAACTT
TCTTTCAAATTTAATTATTTTAGGATGGCGGACAAGCTTGGTGCATTGAA
GTTGTTGATCATTCTTCTGTTTGTTGTGGCGACTGCTGGTTTCGCTGTCT
TCAGCCTCATTTGCGTCAATATCGTTCCTACTTCCATGGCTTTGTTCTAT
CTGACATCCGTTGTCGGTGGTCTTTGTTTAAATGGTTCTATCCCCTTATT
TTTCGAACTAGCTGTCGAATCGAGTTACCCTGTCGCAGAAGGTATAAACA
CTGGAGCTATGACCTTTTCGAACAATATTTATTGCTTGATTTTCTTATCT
TTGCCATTAATACCTAACCTGGGGACAGCATGGATGAATTGGTTTCTTGT
AGGTAGCTGTGTGGTTTGTGTACCCACTATGTTGATGTTTAAAGAACGGT
ACCGAAGGCTTGAATTGGATATGGTTGAGGGAAATACAACTAATAAAAAT
GAGAGTACGAATAGTTTACCATCTCCTACAAATTACAATACTTAAATTTA
TTCATTTTGCCAATTAACGAATATACTTAATGTGGATGGATTTTTGAATA
ACTTTCTAAATTATTTTGCATTTGAAGTTTTATACTTACTTTAAAATTAA
TGTTTTAATGTTTTAACTGTTTTTAGTTTTAGCTTCTACTCTTTCGTTAT
TTTTTTCTTTCGTGAAGTTCGATGGAATTTTGATGAATATGGGAGTTTAT
CAACGCAAAATACATGCTTTTGTTTAACAATTTAAGCACGTTTTCAATTT
AAATTTCAAGAAAAGAATCATTTAAATATATTGCCAGCCCCGACAATTAT
CGAAATTGAGTTCAATCCATGGAGGGGTGGACCAATCGACATAGTCCACC
CCTCTATTATTATACGCGTATTCGAAGACAAAAGAAGTAGTACTTATCAA
GTAGTCAGTTTTGCCCTTTTATCTCATTATACAATATATCTAGTTTTAGT
TTGTAAAAGTTAATATAATAATATTGAAGTATTTTTATAAATAGGCACAG
TTTAGATTGATAATTTTCTATAATTGAATGATAAATATAACAACAATTTT
AGAGTCACGTGGACAGGGGAAACATTTCTACAAAACGACATCTTAACGGT
TGAGAAAAATCACAAAAATCAATCGAGAATGTTTTCTAAGATCTCCTCTA
TAGTCCATCCCTTTTATGTGTTAGATACAGATAATCGAGTCGAATTTGTA
GCAGTGTTGTTTCGTTGCATTAAACATTTTCTCTTGTTTTCCATTAAATT
CTATTTACATTGGTTTTGTTTAAAATATGTAGAGTAAAAAAATTCCATCC
GTTATTTGTTTCAAAACTTAAAGGAGAAAACTTAATAGTCAGGTAATACT
TTGCTTATAGGAAAACTTTCCTAAGAAATTTTTCTTTTTTCCCCGAGTAA
GTTTCCTACTTTTCCTCAACCATAATCATCCGTTTGTCCTTTCTTTTTTT
CGAGTAGATTATTCTTCTACTTTTAATTCTTACTTCTTTCTGTTTTTTTT
TTTCATTGGAAAAAAATATTATTCGCACCCCTCTTCCGGACCCCAACCTA
TCAGGATATTCTGAATTGCCGCAATAAATGATACTTCTTCTATATCAATG
TCTGTGAGTAATAAAGTCTTTCGCCCGTAATTTCATCATGATTTTTATCA
TATTGAAGCGTTGGATCCGTCTCTTCATCACTGACATCACTAGAATGTTG
GTCATCAGCAAATTCTTCACTCTCACCCATTGCTACTTCTTTTAACTCCA
CATCATCATTTGGAAACTCACTTCGACTTTGTCGTTTAATTATACGTTCT
CTTCGCACCAAATGTTTCTTGGCNGAATTACAATACTTAAATTTATTCAT
TTTGCCAATTAACGAATATACTTAATGTGGATGGATTTTTGAATAACTTT
CTAAATTATTTTGTATTTGAAGTTTTATACTTACTTTAAAATATTCTTAG
TTTTTAATGTTTTAACTGTTTTTAGTTTTAGCTTCTACTCTTTCGTTATT
TTTTTCTTTCGTGAAGTTCGATGGAATTTTGATGAATATGGGANTTTAAC
TCCACATCATCATTTGGAAACTCACTTCGACTTTGTCGTTTAATTATACG
TTCTCTTCGCACCAAATGTTTCTTGGCAACTTTAGCCCAACATCTCAATA
CAACAAAAGCAGCTATCTCAATCAGAAAAAGTAAAGAGAACCCACAAAAT
AGACCAATGTTTCCCCCTAAACCTCCAAGGAAATCTCCCCAACTATACAA
CACTTCTTCCTGCTCTAGGTTGTAGACGTAAGGGCTCTCGAATTTCATGC
TCAACTTAAAGTTCGTTTTGTTAATGTCTTCTTTGAAGTGATAACTTGAT
CCATAAATATCAAAGGAAGTTTCCTTGCATGGAAGCTCGCAATCTGTCAC
CTTTCGCTCTTGGTAATAACTTTGATCTAAACATCGATGAATTTCGAGAA
TACTTTTTTCAGGGTCGTGGTATTCATCAACCAAGTCAAAGGGTAAAAAG
TCTTTGCAAAAGTCATAAGTATCTCCACATTTTTTCAAAGCAATTATGCA
CCTCTTTGANCAATCCATGGAGGGGTGGACCAATCGACATAGTCCACCCC
TCTATTATTATACGCGTATTCGAAGACAAAAGAAGTAGTACTTATCAAGT
AGTCAGTTTTGCCCTTTTATCTCATTATACAATATATCTAGTTTTAGTTT
GTAAAAGTTAATATAATAATATTGAAGTATTTTTATAAATAGGCACAGTT
TAGATTGATAATTTTCTATAATTGAATGATAAATATAACAACAATTTTAG
AGTCACGTGGACAGGGGAAACATTTCTACAAAACGACATCTTAACGGTTG
AGAAAAATCACAAAAATCAATCGAGAATGTTTTCTAAGATCTCCTCTATA
GTCCATCCCTTTTNGGTTGTGAGATAGTTGTGTTGTAGAGGGAGGTAAAC
ACTTTTTGGACTTACGTAGATTCGAATGTCATCTTTCTGATGGTCAAAGA
CTTCTTTTTTCGTGTTCAGAATAGAAATATCAATATCGAACCGGTTCTCG
TCATTAAAAAATGTTCCATCATAATTCCAAATCAAACAATTCTCGAAACT
GGTTTCCACTTTGAAATACGTATTAATCAGATCAGAGAAACTTTCACAAA
TACCACGTTCCTGGCATGAGATCTTAAAGTCACCGATTGTAATATGATTC
TTTTCTACAGTTGATCGCAATGTTTCATTCCTTTCTGTCGAATCATACTC
ATCTGGGCATGGTTCTTGCATATTACTATCTTGACCAGGGTTGCTAACGA
TGGCTAGATTGCAATATTTCTTTTTGCGAGGTGGCTTCAAACATATGGTG
ACAGTTGGAAAGTGGTTACTATCAGTGATTATAGTCTGCTTGTCCACTCT
CACGTCCTTTTTGATATATTTGGTGATAAGTTCACTACTCATGTAAACTC
CTATTGATATGGCAACAACTAATACGCAAAACCAAAAGGCTCGTTCAACA
GGGTTTCCAGTAAAGACTCGAGTTAATCCAATGATTGAGAAGTTCTCTGA
ATATGTGTAAGCTTTGTTCTTTATTCGAGTGATGTCTTTACGGCTTGCAC
CAACTGGAAGCATACTGCCTGGAATAAAAGATTAAATAGTTGTGAAATGT
AC Coding sequence (CDS) from alignment at scaffold_233:627287..631738- >TCONS_00053669 ID=TCONS_00053669|Name=TCONS_00053669|organism=Clytia hemisphaerica|type=CDS|length=2316bp|location=Sequence derived from alignment at scaffold_233:627287..631738- (Clytia hemisphaerica)
GATGGCGGACAAGCTTGGTGCATTGAAGTTGTTGATCATTCTTCTGTTTG
TTGTGGCGACTGCTGGTTTCGCTGTCTTCAGCCTCATTTGCGTCAATATC
GTTCCTACTTCCATGGCTTTGTTCTATCTGACATCCGTTGTCGGTGGTCT
TTGTTTAAATGGTTCTATCCCCTTATTTTTCGAACTAGCTGTCGAATCGA
GTTACCCTGTCGCAGAAGGTATAAACACTGGAGCTATGACCTTTTCGAAC
AATATTTATTGCTTGATTTTCTTATCTTTGCCATTAATACCTAACCTGGG
GACAGCATGGATGAATTGGTTTCTTGTAGGTAGCTGTGTGGTTTGTGTAC
CCACTATGTTGATGTTTAAAGAACGGTACCGAAGGCTTGAATTGGATATG
GTTGAGGGAAATACAACTAATAAAAATGAGAGTACGAATAGTTTACCATC
TCCTACAAATTACAATACTTAAATTTTTGTTTTAGGTCTAAGGGTGTCAA
CTTTGATAGCTATTACATGTTTATGTTTTGGTACCGGAGTTCGTTGTATC
ACACCTGATCCGAAATATGCAACACCTTTGATCCATTGCGGTCAAATCAT
GATCGGATTTGCAGGACCTGTCGCGCAAGCAGCTGCCACCGCTCTCTCTA
GTGTCTGGTTTCCTTCAAACCAACGCACCACAGCAACTGCAGTGGCTTCA
CTTGCAAGTTATTGTGGTACTGCATTGAGCTTCTTGACTGGACCATCCGT
TGTGGAAGATTTTGGTGATTATCCCATCAGCGAGGCTCATTCTAAATACA
AAGCACTTGTTGATAAGATATCAAAAGACATAATGCATTATTTGTACGTA
CAAGCCGGTGTTTGTGGTGTTCTGTTCATACTCGTCGTATTCACATTCCC
AAAGAAACCACCAAAACCTCCAAGTGCAACTGCTACTTTGGAAAGAATGA
ATTTCAAAGAAGGGCTAAAGAAGCTGTTTTTTAACCCTCAGTTTCAATTG
ATTGCATTTGCGTATGGATTGACGACTGGCGTTTACAGCGCATGGTGCTC
CGATCTTGCAATCAATCTTAAAAGTTTCAACATCAACGACAAAACAGCTG
GCTTCTTGGGATTCTGGGCTGTGATTGCTGGTTCAATCTCGGGAATTTCC
CTGTCCTTGATGGCGGACAAGCTTGGTGCATTGAAGTTGTTGATCATTCT
TCTGTTTGTTGTGGCGACTGCTGGTTTCGCTGTCTTCAGCCTCATTTGCG
TCAATATCGTTCCTACTTCCATGGCTTTGTTCTATCTGACATCCGTTGTC
GGTGGTCTTTGTTTAAATGGTTCTATCCCCTTATTTTTCGAACTAGCTGT
CGAATCGAGTTACCCTGTCGCAGAAGGTATAAACACTGGAGCTATGACCT
TTTCGAACAATATTTATTGCTTGATTTTCTTATCTTTGCCATTAATACCT
AACCTGGGGACAGCATGGATGAATTGGTTTCTTGTAGGTAGCTGTGTGGT
TTGTGTACCCACTATGTTGATGTTTAAAGAACGGTACCGAAGGCTTGAAT
TGGATATGGTTGAGGGAAATACAACTAATAAAAATGAGAGTACGAATAGT
TTACCATCTCCTACAAATTACAATACTTAAATTTTTGTTTTAGGTCTAAG
GGTGTCAACTTTGATAGCTATTACATGTTTATGTTTTGGTACCGGAGTTC
GTTGTATCACACCTGATCCGAAATATGCAACACCTTTGATCCATTGCGGT
CAAATCATGATCGGATTTGCAGGACCTGTCGCGCAAGCAGCTGCCACCGC
TCTCTCTAGTGTCTGGTTTCCTTCAAACCAACGCACCACAGCAACTGCAG
TGGCTTCACTTGCAAGTTATTGTGGTACTGCATTGAGCTTCTTGACTGGA
CCATCCGTTGTGGAAGATTTTGGTGATTATCCCATCAGCGAGGCTCATTC
TAAATACAAAGCACTTGTTGATAAGATATCAAAAGACATAATGCATTATT
TGTACGTACAAGCCGGTGTTTGTGGTGTTCTGTTCATACTCGTCGTATTC
ACATTCCCAAAGAAACCACCAAAACCTCCAAGTGCAACTGCTACTTTGGA
AAGAATGAATTTCAAAGAAGGGCTAAAGAAGCTGTTTTTTAACCCTCAGT
TTCAATTGATTGCATTTGCGTATGGATTGACGACTGGCGTTTACAGCGCA
TGGTGCTCCGATCTTGCAATCAATCTTAAAAGTTTCAACATCAACGACAA
AACAGCTGGCTTCTTGGGATTCTGGGCTGTGATTGCTGGTTCAATCTCGG
GAATTTCCCTGTCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053669-exon-scaffold_233-1575043694:631051..631738 | TCONS_00053669-exon-scaffold_233-1575043694:631051..631738 | Clytia hemisphaerica | exon |
| TCONS_00053669-exon-scaffold_233-1575043694:627287..630915 | TCONS_00053669-exon-scaffold_233-1575043694:627287..630915 | Clytia hemisphaerica | exon |
| TCONS_00053669-exon-scaffold_233-1510915933:631051..631738 | TCONS_00053669-exon-scaffold_233-1510915933:631051..631738 | Clytia hemisphaerica | exon |
| TCONS_00053669-exon-scaffold_233-1510915933:627287..630915 | TCONS_00053669-exon-scaffold_233-1510915933:627287..630915 | Clytia hemisphaerica | exon |
| TCONS_00053669-exon-scaffold_233-1491911889:631051..631738 | TCONS_00053669-exon-scaffold_233-1491911889:631051..631738 | Clytia hemisphaerica | exon |
| TCONS_00053669-exon-scaffold_233-1491911889:627287..630915 | TCONS_00053669-exon-scaffold_233-1491911889:627287..630915 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:627287..631738 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00053669 vs. Swiss-Prot (Human)
Match: DIRC2 (Disrupted in renal carcinoma protein 2 OS=Homo sapiens GN=DIRC2 PE=1 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 8.030e-50 Identity = 137/365 (37.53%), Postives = 212/365 (58.08%), Query Frame = 3
Query: 15 GLRVSTLIAITCLCFGTGVRCI-TPDPKYATPLIHCGQIMIGFAGPVAQAAATALSSVWFPSNQRTTATAVASLASYCGTALSFLTGPSVVE-DFGDYPISEAHSKYKALVDKISKDIMHYLYVQAGVCGVLFILVVFTFXXXXXXXXSATATLERMNFKEGLKKLFFNPQFQLIAFAYGLTTGVYSAWCSDLAINLKSFNINDKTAGFLGFWAVIAXXXXXXXXXXMADXXX-XXXXXXXXXFVVATAGFAVFSLICVNIV---PTSMALFYLTSVVGGLCLNGSIPLFFELAVESSYPVAEGINTGAMTFSNNIYCLIFLSLPLIPNLGTAWMNWFLVGSCVVCVPTMLMFKERYRRLELDMV 1091
GLR++ L+ + GTG+RCI D LIH GQ++ G AGP AA LS+ WF +++R TATA+AS+ SY G A +FL GP VV G P+ A S + D+I LY + GV ++F + FP +PP PPS A +R++++ + +L N +F +IA AY + GV++ W L + L +++ AG++GFW+++ G + GI+++ AD + LKL+++LLF AT F+L C+N + P + Y + ++ G+ LN S+P+FFEL VE+ YPV EGI G +TF +N++ + L + +W NW L GSC++ + +L F+E Y RL LD+V
Sbjct: 115 GLRITVLLTSFLMVLGTGLRCIPISDLILKRRLIHGGQMLNGLAGPTVMNAAPFLSTTWFSADERATATAIASMLSYLGGACAFLVGPLVVPAPNGTSPLLAAESSRAHIKDRIEA----VLYAEFGVVCLIFSATLAYFPPRPPLPPSVAAASQRLSYRRSVCRLLSNFRFLMIALAYAIPLGVFAGWSGVLDLILTPAHVSQVDAGWIGFWSIVGGCVVGIAMARFADFIRGMLKLILLLLFSGATLSSTWFTLTCLNSITHLPLTTVTLYASCILLGVFLNSSVPIFFELFVETVYPVPEGITCGVVTFLSNMFMGVLLFFLTFYHTELSWFNWCLPGSCLLSLLLILCFRESYDRLYLDVV 475
The following BLAST results are available for this feature:
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