TCONS_00053669-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00053669-protein
Unique Name	TCONS_00053669-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	385

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00053669-protein ID=TCONS_00053669-protein|Name=TCONS_00053669-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp
IFVLGLRVSTLIAITCLCFGTGVRCITPDPKYATPLIHCGQIMIGFAGPV
AQAAATALSSVWFPSNQRTTATAVASLASYCGTALSFLTGPSVVEDFGDY
PISEAHSKYKALVDKISKDIMHYLYVQAGVCGVLFILVVFTFPKKPPKPP
SATATLERMNFKEGLKKLFFNPQFQLIAFAYGLTTGVYSAWCSDLAINLK
SFNINDKTAGFLGFWAVIAGSISGISLSLMADKLGALKLLIILLFVVATA
GFAVFSLICVNIVPTSMALFYLTSVVGGLCLNGSIPLFFELAVESSYPVA
EGINTGAMTFSNNIYCLIFLSLPLIPNLGTAWMNWFLVGSCVVCVPTMLM
FKERYRRLELDMVEGNTTNKNESTNSLPSPTNYNT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033850	XLOC_033850	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00053669	TCONS_00053669	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011701	MFS
IPR020846	MFS_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011701	Major facilitator superfamily	PFAM	PF07690	MFS_1	coord: 27..318 e-value: 1.5E-16 score: 60.2
None	No IPR available	GENE3D	1.20.1250.20		coord: 162..367 e-value: 5.9E-19 score: 67.6
None	No IPR available	GENE3D	1.20.1250.20		coord: 3..156 e-value: 3.4E-14 score: 52.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 366..385
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 4..352 e-value: 4.11821E-9 score: 55.0125
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 5..360

Blast

[Close]

BLAST of TCONS_00053669-protein vs. Swiss-Prot (Human)
Match: DIRC2 (Disrupted in renal carcinoma protein 2 OS=Homo sapiens GN=DIRC2 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.906e-59
Identity = 138/365 (37.81%), Postives = 213/365 (58.36%), Query Frame = 0

Query:    5 GLRVSTLIAITCLCFGTGVRCI-TPDPKYATPLIHCGQIMIGFAGPVAQAAATALSSVWFPSNQRTTATAVASLASYCGTALSFLTGPSVV-EDFGDYPISEAHSKYKALVDKISKDIMHYLYVQAGVCGVLFILVVFTFPKKPPKPPSATATLERMNFKEGLKKLFFNPQFQLIAFAYGLTTGVYSAWCSDLAINLKSFNINDKTAGFLGFWAVIAGSISGISLSLMADKL-GALKLLIILLFVVATAGFAVFSLICVNIV---PTSMALFYLTSVVGGLCLNGSIPLFFELAVESSYPVAEGINTGAMTFSNNIYCLIFLSLPLIPNLGTAWMNWFLVGSCVVCVPTMLMFKERYRRLELDMV 363
            GLR++ L+    +  GTG+RCI   D      LIH GQ++ G AGP    AA  LS+ WF +++R TATA+AS+ SY G A +FL GP VV    G  P+  A S    + D+I       LY + GV  ++F   +  FP +PP PPS  A  +R++++  + +L  N +F +IA AY +  GV++ W   L + L   +++   AG++GFW+++ G + GI+++  AD + G LKL+++LLF  AT     F+L C+N +   P +    Y + ++ G+ LN S+P+FFEL VE+ YPV EGI  G +TF +N++  + L      +   +W NW L GSC++ +  +L F+E Y RL LD+V
Sbjct:  115 GLRITVLLTSFLMVLGTGLRCIPISDLILKRRLIHGGQMLNGLAGPTVMNAAPFLSTTWFSADERATATAIASMLSYLGGACAFLVGPLVVPAPNGTSPLLAAESSRAHIKDRIEA----VLYAEFGVVCLIFSATLAYFPPRPPLPPSVAAASQRLSYRRSVCRLLSNFRFLMIALAYAIPLGVFAGWSGVLDLILTPAHVSQVDAGWIGFWSIVGGCVVGIAMARFADFIRGMLKLILLLLFSGATLSSTWFTLTCLNSITHLPLTTVTLYASCILLGVFLNSSVPIFFELFVETVYPVPEGITCGVVTFLSNMFMGVLLFFLTFYHTELSWFNWCLPGSCLLSLLLILCFRESYDRLYLDVV 475

The following BLAST results are available for this feature:

BLAST of TCONS_00053669-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00053669-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DIRC2	1.906e-59	37.81	Disrupted in renal carcinoma protein 2 OS=Homo sap...	[more]

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TCONS_00053669-protein (polypeptide) - C. hemisphaerica