TCONS_00043970 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043970
Unique NameTCONS_00043970
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2180

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043970 ID=TCONS_00043970|Name=TCONS_00043970|organism=Clytia hemisphaerica|type=transcript|length=2180bp
GAAGAACTGGAAACgaaaaaggaagaataaaagaaaaagaagagaaagaa
aatcattATCATTATTATGACAGTTTTCTGGATGAGAGTGTGATGTTGTG
AGAGAGAATAACAAAGTATATTTTGTCGTCGCCTGCTGCTCCAGCTCGAC
TTTTTTTCGTTCTCtgttaagaaaaagtaatatattaaaaagaaaaaaaa
ctatttccACCGCTCACTCAACAAGGcttaaaaactttgtaaaagaAAAG
CCTTTACTTGAGACGAGAGGCGATCACCCATTTTTGCTTCGGCGTGGATT
GAATTCAAGACGTATAACCGGGTTTTGAACGAACATACTACTAACATCAC
CAAACAAGAGAGGGAATTTATACTCGGTGAATAAATGAAATCATTCTTCT
TGATACTGTTGTAAGGGAAAATGACTACGGATTTGAAACAATATTCAAAG
ACGTATCACCCGATGACGTCGTCTTCGTCGTCGTCGGGAAAACATCGGCG
ATATAAAAGACGTCAGACGCATATATTCATCAAATTAGTTTGCATAACTG
TAACTTTGACAACTGTATTGGTTTTTTTGACGCTCTATAAATATTTAGAT
TCCAAGCAAAGCAAATGGAGAAGTAACCAACAGCTGGTCAGTAAATTACA
CGATGACTCGTACCAGTCACGCAAACTATTGAATGTAAATAATGAAACTA
CGACAACGAAAGCCCCAGTTACACCACAGGGTATCGGTGACTACCCAAAG
GATCTATTTACTGTCGAACAAAAGAAGAACGGGTGGATTGCTCTACATGT
AATCGGGGTTTTATACATGTTCTTAGCTTTGGCTATCATATGTGATGAAT
TTTTTGTGCCTGCTTTACACGTTATTTCTTCTATCTTGAAGATATCAGAC
GACGTAGCTGGTGCTACTTTCATGGCAGCAGGCGGTAGCGCCCCAGAACT
TTTCACATCCATCATTGGGGTGTTTTTCTCCGATTCACAAGTTGGATTTG
GTACTATAGTAGGGAGTGCTGTATTCAACGTACTTTTTGTGATCGGCATG
TGCGCTATGTGCAGCAAAACCCTCTTGAACTTAACATGGTGGCCACTGCT
TAGAGACAGTATTTTCTACATCATAGCTTTGATTCTACTCATTATATTCT
TCTCGGACAGTTCCATATCATGGCACGAATCATTGGGCTTGTTTCTAGTC
TATATCGCTTACGTCATCTTCATGATCAAGAACAGTAGTATAGAGATGGC
TGTCAAAGCTTATATTTCGAAGAAAACAAGGGCGTCAAGTGTGACACCCA
TCATCGATGAAAAGAACGAAAATGGTTTTCTTTCGTTACCATCGATGTTT
TCGAAGAATTCGTTTCGCAATGGTGCCATACAGCTTGTCATTCATACGCT
TGACCCCATCGCTGAAGCTGGCGTGGATGATAAGCTCCAAAAGATCAAAG
ATCATTATGACACAATTTCAACGGATCAACAGAAAGGTCTTTCTACCTCC
TTGTTGGACGAAAAAGAGTTGACGTCACCTAACCAATCAGAAACCACCAT
TCTTCATGATGATTACAATAGCCAAAGGGGACCATCAGAAACGAGTGTTG
CACACTCCAGAATTTCGCATGGCAAAGAGGAGATTGAAATGATGGAGAGG
AACAATCAGAATAGCTCCACAGAGGCTATCAACGGCCATGCTACAAAACC
AGTACCAAATAATGATGCTAAAAACCATCCCAACTCTACTCAAGATAGCC
GACCCAACTCCGTCGCGTCATTGTTTAATGACAATGACGTCAATCAGAAT
AACGGCGATACTGTCAATCGTAATGGTGTCGGTATGATTGATGACGCATC
CCGACGAAACTCGGTACGGTTCTCGTCACGACGACTATCGAGATGTTCGT
CGAGAGCAAGTTGTCGGAGTCACCGAGGGTTAGCACCGGTCAAGAAAGAG
TCACCCGTCGAAGATATTAAAGATCCAGAGGACGGTGAAGGTGATGACAC
AGGCgatgaagaggaagaagaagaaggaccAGTGGATTTGAGTTGGCCTG
ATGAAATTTTCGAACGTATCTTCTACGTCATCAAAGCACCTTTACTCTTC
GTCATGGTCTTGACTGTACCTGATGTTCGGCGACCGaaatttaaaaagtt
gtttCCACTGACGTTTACGTTGAGCATCGT
Run BLAST on NCBI

protein sequence of TCONS_00043970-protein

>TCONS_00043970-protein ID=TCONS_00043970-protein|Name=TCONS_00043970-protein|organism=Clytia hemisphaerica|type=polypeptide|length=586bp
MTTDLKQYSKTYHPMTSSSSSSGKHRRYKRRQTHIFIKLVCITVTLTTVL
VFLTLYKYLDSKQSKWRSNQQLVSKLHDDSYQSRKLLNVNNETTTTKAPV
TPQGIGDYPKDLFTVEQKKNGWIALHVIGVLYMFLALAIICDEFFVPALH
VISSILKISDDVAGATFMAAGGSAPELFTSIIGVFFSDSQVGFGTIVGSA
VFNVLFVIGMCAMCSKTLLNLTWWPLLRDSIFYIIALILLIIFFSDSSIS
WHESLGLFLVYIAYVIFMIKNSSIEMAVKAYISKKTRASSVTPIIDEKNE
NGFLSLPSMFSKNSFRNGAIQLVIHTLDPIAEAGVDDKLQKIKDHYDTIS
TDQQKGLSTSLLDEKELTSPNQSETTILHDDYNSQRGPSETSVAHSRISH
GKEEIEMMERNNQNSSTEAINGHATKPVPNNDAKNHPNSTQDSRPNSVAS
LFNDNDVNQNNGDTVNRNGVGMIDDASRRNSVRFSSRRLSRCSSRASCRS
HRGLAPVKKESPVEDIKDPEDGEGDDTGDEEEEEEGPVDLSWPDEIFERI
FYVIKAPLLFVMVLTVPDVRRPKFKKLFPLTFTLSI
Run BLAST on NCBI

transcript from alignment at sc0004792:1082..5599+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043970 ID=TCONS_00043970|Name=TCONS_00043970|organism=Clytia hemisphaerica|type=transcript|length=4518bp|location=Sequence derived from alignment at sc0004792:1082..5599+ (Clytia hemisphaerica)
GAAGAACTGGAAACgaaaaaggaagaataaaagaaaaagaagagaaagaa
aatcattATCATTATTATGACAGTTTTCTGGATGAGAGTGTGATGTTGTG
AGAGAGAATAACAAAGTATATTTTGTCGTCGCCTGCTGCTCCAGCTCGAC
TTTTTTTCGTTCTCtgttaagaaaaagtaatatattaaaaagaaaaaaaa
ctatttccACCGCTCACTCAACAAGGcttaaaaactttgtaaaagaAAAG
CCTTTACTTGAGACGAGAGGCGATCACCCATTTTTGCTTCGGCGTGGATT
GAATTCAAGACGTATAACCGGGTTTTGAACGAACATACTACTAACATCAC
CAAACAAGAGAGGGAATTTATACTCGGTGAATAAATGAAATCATTCTTCT
TGATACTGTTGTAAGGGAAAATGACTACGGATTTGAAACAATATTCAAAG
ACGTATCACCCGATGACGTCGTCTTCGTCGTCGTCGGGAAAACATCGGCG
ATATAAAAGACGTCAGACGCATATATTCATCAAATTAGTTTGCATAACTG
TAACTTTGACAACTGTATTGGTTTTTTTGACGCTCTATAAATATTTAGAT
TCCAAGCAAAGCAAATGGAGAAGTAACCAACAGCTGGTCAGTAAATTACA
CGATGACTCGTACCAGTCACGCAAACTATTGAATGTAAATAATGAAACTA
CGACAACGAAAGCCCCAGTTACACCACAGGGTATCGGTGACTACCCAAAG
GATCTATTTACTGTCGAACAAAAGAAGAACGGGTGGATTGCTCTACATGT
AATCGGGGTTTTATACATGTTCTTAGCTTTGGCTATCATATGTGATGAAT
TTTTTGTGCCTGCTTTACACGTTATTTCTTCTATCTTGAAGATATCAGAC
GACGTAGCTGGTGCTACTTTCATGGCAGCAGGCGGTAGCGCCCCAGAACT
TTTCACATCCATCATTGGGGTGTTTTTCTCCGATTCACAAGTTGGATTTG
GTACTATAGTAGGGAGTGCTGTATTCAACGTACTTTTTGTGATCGGCATG
TGCGCTATGTGCAGCAAAACCCTCTTGAACTTAACATGGTGGCCACTGCT
TAGAGACAGTATTTTCTACATCATAGCTTTGATTCTACTCATTATATTCT
TCTCGGACAGTTCCATATCATGGCACGAATCATTGGGCTTGTTTCTAGTC
TATATCGCTTACGTCATCTTCATGATCAAGAACAGTAGTATAGAGATGGC
TGTCAAAGCTTATATTTCGAAGAAAACAAGGGCGTCAAGTGTGACACCCA
TCATCGATGAAAAGAACGAAAATGTAAGTGTTTTAAATATAGGAGCTCAC
TGTGAATGGAAAGGATGGAAATCACTTCGACTGgtatgatttatttttgc
gCTGGAATcgatattttgttttgtttatagtGTGAAACAATACAGTGTCC
CACACAGCTCGatttgttacgggataatatgtTAAAGGCGTTTGTTAGTT
GAAGGATCCTAAAAATTATTGGAGTTATAAAGAATACAGTAAACTACGTC
TTTAACTCCAACGAAAATCACGAATAATACCTTTTTGTATTCTTTACTCA
TCAGGGTTTTCTTTCGTTACCATCGATGTTTTCGAAGAATTCGTTTCGCA
ATGGTGCCATACAGCTTGTCATTCATACGCTTGACCCCATCGCTGAAGGT
GAGACGAAAGATTTTGTATGAACACTGTGCCTCTCAAATAAGAATACATN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNataa
aggcaattttttgttaaaagtgttaaagaatctaaaacataactttcatg
ttcagatactaaaatcaattttccgactatggtcagagcccttaagaaca
TCGCAAGAGcatttaagtttgaaaatttcagagaATTACAGAGAAAGTTA
CGAACAGCCCAGTCTAAGCTAAAATTTTctggttttgatatttttaaaag
cgTGAAAATCATACAACTAATAATGTGGTCAGCAACTTCTCAGAACTAAT
TCTAAGCTTTAAATGAAGAAACCAAAAAGAGAACTGGTTGTAGTAGAAAG
TATCCATTTCTAGAAGGATGTTTGTTGCAGAAGAAAAATATAGACCTAGT
TTGCAAAAGCTGTACAGTTTTCTGAGGTCATTGTTGAGATTTAAATCCCT
AGTCCTCTTGAAGCTTATCTGAACTTTTCAATTCTATTTCTGACATAGCT
GGCGTGGATGATAAGCTCCAAAAGATCAAAGATCATTATGACACAATTTC
AACGGATCAACAGAAAGGTCTTTCTACCTCCTTGTTGGACGAAAAAGAGT
TGACGTCACCTAACCAATCAGAAACCACCATTCTTCATGATGATTACAAT
AGCCAAAGGGGACCATCAGAAACGAGTGTTGCACACTCCAGAATTTCGCA
TGGCAAAGAGGTAATTTTTCAACAAGTCTCATTGAATAAATATTGTTGTA
TGGGTTGTATACGTGAACAATTCCTTAGAGGAAGCATGAGAGATGAGGAT
ACTTTTATACATCATACATTCGTTTCATCTAAAGCGGTtctcataaattt
ttcattttgagttcTGGGAAGGAGACTTTAAGATCGTATAAATACTGcac
aaaatatttcacaaaaacgGTAATTATTGTTATGTCCTTGACCATTTACT
ATCTTAAAGTTGTTTAAGAGAGTTTGGTGAGCTTTAAAGAGGAGTTTGAT
GGGCTTTAAAGAGTATTCATCACGTGTCATTGATATAATCCGTGTTCCAT
TCGCAGGAGATTGAAATGATGGAGAGGAACAATCAGAATAGCTCCACAGA
GGCTATCAACGGCCATGCTACAAAACCAGTACCAAATAATGATGCTAAAA
ACCATCCCAACTCTACTCAAGATAGCCGACCCAACTCCGTCGCGTCATTG
TTTAATGACAATGACGTCAATCAGAATAACGGCGATACTGTCAATCGTAA
TGGTGTCGGTATGATTGATGACGCATCCCGACGAAACTCGGTACGGTTCT
CGTCACGACGACTATCGAGATGTTCGTCGAGAGCAAGTTGTCGGAGTCAC
CGAGGGTTAGCACCGGTCAAGAAAGAGTCACCCGTCGAAGATATTAAAGA
TCCAGAGGTattgaattttcttcaaatcaatATTGTAAGATGCTACAGTA
GAAGTGTTCTACTCCTAGGATGTCgagttttaattttaaaaatttgtaat
CTAAACATATCCAAACTTTTCATCAAAAGGCGGGCGACTTTTTTATGTTT
GAATAGTTTCCTATCCATTATTTGTATTTTNCTTTTCATCAAAAGGCGGG
CGACTTTTTTATGTTTGAATAGTTTCCTATCcattatttgtatttttcat
acttttcaaTCCGTAGGACGGTGAAGGTGATGACACAGGCgatgaagagg
aagaagaagaaggaccAGTGGATTTGAGTTGGCCTGATGAAATTTTCGAA
CGTATCTTCTACGTCATCAAAGCACCTTTACTCTTCGTCATGGTCTTGAC
TGTACCTGATGTTCGGCGACCGGTAATTTTCCCTAAAAACTCGTCTCCAT
TCCTTTTAACAAGGCTCAAAATCTACAAGGCTCGAAAGCGACAGGCACAC
ACCACAAGATCCTATTTGTAAACCCAAAAATGACTGTTGTCTCTAGAATT
TAGAAGGAATAACTTTTAATTTGCTTCACCCTTTTTTCCAACATatcatt
attttcaattttttcgtttcccagaaatttaaaaagttgtttCCACTGAC
GTTTACGTTGAGCATCGT

Coding sequence (CDS) from alignment at sc0004792:1082..5599+

>TCONS_00043970 ID=TCONS_00043970|Name=TCONS_00043970|organism=Clytia hemisphaerica|type=CDS|length=10548bp|location=Sequence derived from alignment at sc0004792:1082..5599+ (Clytia hemisphaerica)
ATGACTACGGATTTGAAACAATATTCAAAGACGTATCACCCGATGACGTC
GTCTTCGTCGTCGTCGGGAAAACATCGGCGATATAAAAGACGTCAGACGC
ATATATTCATCAAATTAGTTTGCATAACTGTAACTTTGACAACTGTATTG
GTTTTTTTGACGCTCTATAAATATTTAGATTCCAAGCAAAGCAAATGGAG
AAGTAACCAACAGCTGGTCAGTAAATTACACGATGACTCGTACCAGTCAC
GCAAACTATTGAATGTAAATAATGAAACTACGACAACGAAAGCCCCAGTT
ACACCACAGGGTATCGGTGACTACCCAAAGGATCTATTTACTGTCGAACA
AAAGAAGAACGGGTGGATTGCTCTACATGTAATCGGGGTTTTATACATGT
TCTTAGCTTTGGCTATCATATGTGATGAATTTTTTGTGCCTGCTTTACAC
GTTATTTCTTCTATCTTGAAGATATCAGACGACGTAGCTGGTGCTACTTT
CATGGCAGCAGGCGGTAGCGCCCCAGAACTTTTCACATCCATCATTGGGG
TGTTTTTCTCCGATTCACAAGTTGGATTTGGTACTATAGTAGGGAGTGCT
GTATTCAACGTACTTTTTGTGATCGGCATGTGCGCTATGTGCAGCAAAAC
CCTCTTGAACTTAACATGGTGGCCACTGCTTAGAGACAGTATTTTCTACA
TCATAGCTTTGATTCTACTCATTATATTCTTCTCGGACAGTTCCATATCA
TGGCACGAATCATTGGGCTTGTTTCTAGTCTATATCGCTTACGTCATCTT
CATGATCAAGAACAGTAGTATAGAGATGGCTGTCAAAGCTTATATTTCGA
AGAAAACAAGGGCGTCAAGTGTGACACCCATCATCGATGAAAAGAACGAA
AATGGTTTTCTTTCGTTACCATCGATGTTTTCGAAGAATTCGTTTCGCAA
TGGTGCCATACAGCTTGTCATTCATACGCTTGACCCCATCGCTGAAGCTG
GCGTGGATGATAAGCTCCAAAAGATCAAAGATCATTATGACACAATTTCA
ACGGATCAACAGAAAGGTCTTTCTACCTCCTTGTTGGACGAAAAAGAGTT
GACGTCACCTAACCAATCAGAAACCACCATTCTTCATGATGATTACAATA
GCCAAAGGGGACCATCAGAAACGAGTGTTGCACACTCCAGAATTTCGCAT
GGCAAAGAGGAGATTGAAATGATGGAGAGGAACAATCAGAATAGCTCCAC
AGAGGCTATCAACGGCCATGCTACAAAACCAGTACCAAATAATGATGCTA
AAAACCATCCCAACTCTACTCAAGATAGCCGACCCAACTCCGTCGCGTCA
TTGTTTAATGACAATGACGTCAATCAGAATAACGGCGATACTGTCAATCG
TAATGGTGTCGGTATGATTGATGACGCATCCCGACGAAACTCGGTACGGT
TCTCGTCACGACGACTATCGAGATGTTCGTCGAGAGCAAGTTGTCGGAGT
CACCGAGGGTTAGCACCGGTCAAGAAAGAGTCACCCGTCGAAGATATTAA
AGATCCAGAGGACGGTGAAGGTGATGACACAGGCgatgaagaggaagaag
aagaaggaccAGTGGATTTGAGTTGGCCTGATGAAATTTTCGAACGTATC
TTCTACGTCATCAAAGCACCTTTACTCTTCGTCATGGTCTTGACTGTACC
TGATGTTCGGCGACCGaaatttaaaaagttgtttCCACTGACGTTTACGT
TGAGCATCATGACTACGGATTTGAAACAATATTCAAAGACGTATCACCCG
ATGACGTCGTCTTCGTCGTCGTCGGGAAAACATCGGCGATATAAAAGACG
TCAGACGCATATATTCATCAAATTAGTTTGCATAACTGTAACTTTGACAA
CTGTATTGGTTTTTTTGACGCTCTATAAATATTTAGATTCCAAGCAAAGC
AAATGGAGAAGTAACCAACAGCTGGTCAGTAAATTACACGATGACTCGTA
CCAGTCACGCAAACTATTGAATGTAAATAATGAAACTACGACAACGAAAG
CCCCAGTTACACCACAGGGTATCGGTGACTACCCAAAGGATCTATTTACT
GTCGAACAAAAGAAGAACGGGTGGATTGCTCTACATGTAATCGGGGTTTT
ATACATGTTCTTAGCTTTGGCTATCATATGTGATGAATTTTTTGTGCCTG
CTTTACACGTTATTTCTTCTATCTTGAAGATATCAGACGACGTAGCTGGT
GCTACTTTCATGGCAGCAGGCGGTAGCGCCCCAGAACTTTTCACATCCAT
CATTGGGGTGTTTTTCTCCGATTCACAAGTTGGATTTGGTACTATAGTAG
GGAGTGCTGTATTCAACGTACTTTTTGTGATCGGCATGTGCGCTATGTGC
AGCAAAACCCTCTTGAACTTAACATGGTGGCCACTGCTTAGAGACAGTAT
TTTCTACATCATAGCTTTGATTCTACTCATTATATTCTTCTCGGACAGTT
CCATATCATGGCACGAATCATTGGGCTTGTTTCTAGTCTATATCGCTTAC
GTCATCTTCATGATCAAGAACAGTAGTATAGAGATGGCTGTCAAAGCTTA
TATTTCGAAGAAAACAAGGGCGTCAAGTGTGACACCCATCATCGATGAAA
AGAACGAAAATGGTTTTCTTTCGTTACCATCGATGTTTTCGAAGAATTCG
TTTCGCAATGGTGCCATACAGCTTGTCATTCATACGCTTGACCCCATCGC
TGAAGCTGGCGTGGATGATAAGCTCCAAAAGATCAAAGATCATTATGACA
CAATTTCAACGGATCAACAGAAAGGTCTTTCTACCTCCTTGTTGGACGAA
AAAGAGTTGACGTCACCTAACCAATCAGAAACCACCATTCTTCATGATGA
TTACAATAGCCAAAGGGGACCATCAGAAACGAGTGTTGCACACTCCAGAA
TTTCGCATGGCAAAGAGGAGATTGAAATGATGGAGAGGAACAATCAGAAT
AGCTCCACAGAGGCTATCAACGGCCATGCTACAAAACCAGTACCAAATAA
TGATGCTAAAAACCATCCCAACTCTACTCAAGATAGCCGACCCAACTCCG
TCGCGTCATTGTTTAATGACAATGACGTCAATCAGAATAACGGCGATACT
GTCAATCGTAATGGTGTCGGTATGATTGATGACGCATCCCGACGAAACTC
GGTACGGTTCTCGTCACGACGACTATCGAGATGTTCGTCGAGAGCAAGTT
GTCGGAGTCACCGAGGGTTAGCACCGGTCAAGAAAGAGTCACCCGTCGAA
GATATTAAAGATCCAGAGGACGGTGAAGGTGATGACACAGGCgatgaaga
ggaagaagaagaaggaccAGTGGATTTGAGTTGGCCTGATGAAATTTTCG
AACGTATCTTCTACGTCATCAAAGCACCTTTACTCTTCGTCATGGTCTTG
ACTGTACCTGATGTTCGGCGACCGaaatttaaaaagttgtttCCACTGAC
GTTTACGTTGAGCATCATGACTACGGATTTGAAACAATATTCAAAGACGT
ATCACCCGATGACGTCGTCTTCGTCGTCGTCGGGAAAACATCGGCGATAT
AAAAGACGTCAGACGCATATATTCATCAAATTAGTTTGCATAACTGTAAC
TTTGACAACTGTATTGGTTTTTTTGACGCTCTATAAATATTTAGATTCCA
AGCAAAGCAAATGGAGAAGTAACCAACAGCTGGTCAGTAAATTACACGAT
GACTCGTACCAGTCACGCAAACTATTGAATGTAAATAATGAAACTACGAC
AACGAAAGCCCCAGTTACACCACAGGGTATCGGTGACTACCCAAAGGATC
TATTTACTGTCGAACAAAAGAAGAACGGGTGGATTGCTCTACATGTAATC
GGGGTTTTATACATGTTCTTAGCTTTGGCTATCATATGTGATGAATTTTT
TGTGCCTGCTTTACACGTTATTTCTTCTATCTTGAAGATATCAGACGACG
TAGCTGGTGCTACTTTCATGGCAGCAGGCGGTAGCGCCCCAGAACTTTTC
ACATCCATCATTGGGGTGTTTTTCTCCGATTCACAAGTTGGATTTGGTAC
TATAGTAGGGAGTGCTGTATTCAACGTACTTTTTGTGATCGGCATGTGCG
CTATGTGCAGCAAAACCCTCTTGAACTTAACATGGTGGCCACTGCTTAGA
GACAGTATTTTCTACATCATAGCTTTGATTCTACTCATTATATTCTTCTC
GGACAGTTCCATATCATGGCACGAATCATTGGGCTTGTTTCTAGTCTATA
TCGCTTACGTCATCTTCATGATCAAGAACAGTAGTATAGAGATGGCTGTC
AAAGCTTATATTTCGAAGAAAACAAGGGCGTCAAGTGTGACACCCATCAT
CGATGAAAAGAACGAAAATGGTTTTCTTTCGTTACCATCGATGTTTTCGA
AGAATTCGTTTCGCAATGGTGCCATACAGCTTGTCATTCATACGCTTGAC
CCCATCGCTGAAGCTGGCGTGGATGATAAGCTCCAAAAGATCAAAGATCA
TTATGACACAATTTCAACGGATCAACAGAAAGGTCTTTCTACCTCCTTGT
TGGACGAAAAAGAGTTGACGTCACCTAACCAATCAGAAACCACCATTCTT
CATGATGATTACAATAGCCAAAGGGGACCATCAGAAACGAGTGTTGCACA
CTCCAGAATTTCGCATGGCAAAGAGGAGATTGAAATGATGGAGAGGAACA
ATCAGAATAGCTCCACAGAGGCTATCAACGGCCATGCTACAAAACCAGTA
CCAAATAATGATGCTAAAAACCATCCCAACTCTACTCAAGATAGCCGACC
CAACTCCGTCGCGTCATTGTTTAATGACAATGACGTCAATCAGAATAACG
GCGATACTGTCAATCGTAATGGTGTCGGTATGATTGATGACGCATCCCGA
CGAAACTCGGTACGGTTCTCGTCACGACGACTATCGAGATGTTCGTCGAG
AGCAAGTTGTCGGAGTCACCGAGGGTTAGCACCGGTCAAGAAAGAGTCAC
CCGTCGAAGATATTAAAGATCCAGAGGACGGTGAAGGTGATGACACAGGC
gatgaagaggaagaagaagaaggaccAGTGGATTTGAGTTGGCCTGATGA
AATTTTCGAACGTATCTTCTACGTCATCAAAGCACCTTTACTCTTCGTCA
TGGTCTTGACTGTACCTGATGTTCGGCGACCGaaatttaaaaagttgttt
CCACTGACGTTTACGTTGAGCATCATGACTACGGATTTGAAACAATATTC
AAAGACGTATCACCCGATGACGTCGTCTTCGTCGTCGTCGGGAAAACATC
GGCGATATAAAAGACGTCAGACGCATATATTCATCAAATTAGTTTGCATA
ACTGTAACTTTGACAACTGTATTGGTTTTTTTGACGCTCTATAAATATTT
AGATTCCAAGCAAAGCAAATGGAGAAGTAACCAACAGCTGGTCAGTAAAT
TACACGATGACTCGTACCAGTCACGCAAACTATTGAATGTAAATAATGAA
ACTACGACAACGAAAGCCCCAGTTACACCACAGGGTATCGGTGACTACCC
AAAGGATCTATTTACTGTCGAACAAAAGAAGAACGGGTGGATTGCTCTAC
ATGTAATCGGGGTTTTATACATGTTCTTAGCTTTGGCTATCATATGTGAT
GAATTTTTTGTGCCTGCTTTACACGTTATTTCTTCTATCTTGAAGATATC
AGACGACGTAGCTGGTGCTACTTTCATGGCAGCAGGCGGTAGCGCCCCAG
AACTTTTCACATCCATCATTGGGGTGTTTTTCTCCGATTCACAAGTTGGA
TTTGGTACTATAGTAGGGAGTGCTGTATTCAACGTACTTTTTGTGATCGG
CATGTGCGCTATGTGCAGCAAAACCCTCTTGAACTTAACATGGTGGCCAC
TGCTTAGAGACAGTATTTTCTACATCATAGCTTTGATTCTACTCATTATA
TTCTTCTCGGACAGTTCCATATCATGGCACGAATCATTGGGCTTGTTTCT
AGTCTATATCGCTTACGTCATCTTCATGATCAAGAACAGTAGTATAGAGA
TGGCTGTCAAAGCTTATATTTCGAAGAAAACAAGGGCGTCAAGTGTGACA
CCCATCATCGATGAAAAGAACGAAAATGGTTTTCTTTCGTTACCATCGAT
GTTTTCGAAGAATTCGTTTCGCAATGGTGCCATACAGCTTGTCATTCATA
CGCTTGACCCCATCGCTGAAGCTGGCGTGGATGATAAGCTCCAAAAGATC
AAAGATCATTATGACACAATTTCAACGGATCAACAGAAAGGTCTTTCTAC
CTCCTTGTTGGACGAAAAAGAGTTGACGTCACCTAACCAATCAGAAACCA
CCATTCTTCATGATGATTACAATAGCCAAAGGGGACCATCAGAAACGAGT
GTTGCACACTCCAGAATTTCGCATGGCAAAGAGGAGATTGAAATGATGGA
GAGGAACAATCAGAATAGCTCCACAGAGGCTATCAACGGCCATGCTACAA
AACCAGTACCAAATAATGATGCTAAAAACCATCCCAACTCTACTCAAGAT
AGCCGACCCAACTCCGTCGCGTCATTGTTTAATGACAATGACGTCAATCA
GAATAACGGCGATACTGTCAATCGTAATGGTGTCGGTATGATTGATGACG
CATCCCGACGAAACTCGGTACGGTTCTCGTCACGACGACTATCGAGATGT
TCGTCGAGAGCAAGTTGTCGGAGTCACCGAGGGTTAGCACCGGTCAAGAA
AGAGTCACCCGTCGAAGATATTAAAGATCCAGAGGACGGTGAAGGTGATG
ACACAGGCgatgaagaggaagaagaagaaggaccAGTGGATTTGAGTTGG
CCTGATGAAATTTTCGAACGTATCTTCTACGTCATCAAAGCACCTTTACT
CTTCGTCATGGTCTTGACTGTACCTGATGTTCGGCGACCGaaatttaaaa
agttgtttCCACTGACGTTTACGTTGAGCATCATGACTACGGATTTGAAA
CAATATTCAAAGACGTATCACCCGATGACGTCGTCTTCGTCGTCGTCGGG
AAAACATCGGCGATATAAAAGACGTCAGACGCATATATTCATCAAATTAG
TTTGCATAACTGTAACTTTGACAACTGTATTGGTTTTTTTGACGCTCTAT
AAATATTTAGATTCCAAGCAAAGCAAATGGAGAAGTAACCAACAGCTGGT
CAGTAAATTACACGATGACTCGTACCAGTCACGCAAACTATTGAATGTAA
ATAATGAAACTACGACAACGAAAGCCCCAGTTACACCACAGGGTATCGGT
GACTACCCAAAGGATCTATTTACTGTCGAACAAAAGAAGAACGGGTGGAT
TGCTCTACATGTAATCGGGGTTTTATACATGTTCTTAGCTTTGGCTATCA
TATGTGATGAATTTTTTGTGCCTGCTTTACACGTTATTTCTTCTATCTTG
AAGATATCAGACGACGTAGCTGGTGCTACTTTCATGGCAGCAGGCGGTAG
CGCCCCAGAACTTTTCACATCCATCATTGGGGTGTTTTTCTCCGATTCAC
AAGTTGGATTTGGTACTATAGTAGGGAGTGCTGTATTCAACGTACTTTTT
GTGATCGGCATGTGCGCTATGTGCAGCAAAACCCTCTTGAACTTAACATG
GTGGCCACTGCTTAGAGACAGTATTTTCTACATCATAGCTTTGATTCTAC
TCATTATATTCTTCTCGGACAGTTCCATATCATGGCACGAATCATTGGGC
TTGTTTCTAGTCTATATCGCTTACGTCATCTTCATGATCAAGAACAGTAG
TATAGAGATGGCTGTCAAAGCTTATATTTCGAAGAAAACAAGGGCGTCAA
GTGTGACACCCATCATCGATGAAAAGAACGAAAATGGTTTTCTTTCGTTA
CCATCGATGTTTTCGAAGAATTCGTTTCGCAATGGTGCCATACAGCTTGT
CATTCATACGCTTGACCCCATCGCTGAAGCTGGCGTGGATGATAAGCTCC
AAAAGATCAAAGATCATTATGACACAATTTCAACGGATCAACAGAAAGGT
CTTTCTACCTCCTTGTTGGACGAAAAAGAGTTGACGTCACCTAACCAATC
AGAAACCACCATTCTTCATGATGATTACAATAGCCAAAGGGGACCATCAG
AAACGAGTGTTGCACACTCCAGAATTTCGCATGGCAAAGAGGAGATTGAA
ATGATGGAGAGGAACAATCAGAATAGCTCCACAGAGGCTATCAACGGCCA
TGCTACAAAACCAGTACCAAATAATGATGCTAAAAACCATCCCAACTCTA
CTCAAGATAGCCGACCCAACTCCGTCGCGTCATTGTTTAATGACAATGAC
GTCAATCAGAATAACGGCGATACTGTCAATCGTAATGGTGTCGGTATGAT
TGATGACGCATCCCGACGAAACTCGGTACGGTTCTCGTCACGACGACTAT
CGAGATGTTCGTCGAGAGCAAGTTGTCGGAGTCACCGAGGGTTAGCACCG
GTCAAGAAAGAGTCACCCGTCGAAGATATTAAAGATCCAGAGGACGGTGA
AGGTGATGACACAGGCgatgaagaggaagaagaagaaggaccAGTGGATT
TGAGTTGGCCTGATGAAATTTTCGAACGTATCTTCTACGTCATCAAAGCA
CCTTTACTCTTCGTCATGGTCTTGACTGTACCTGATGTTCGGCGACCGaa
atttaaaaagttgtttCCACTGACGTTTACGTTGAGCATCATGACTACGG
ATTTGAAACAATATTCAAAGACGTATCACCCGATGACGTCGTCTTCGTCG
TCGTCGGGAAAACATCGGCGATATAAAAGACGTCAGACGCATATATTCAT
CAAATTAGTTTGCATAACTGTAACTTTGACAACTGTATTGGTTTTTTTGA
CGCTCTATAAATATTTAGATTCCAAGCAAAGCAAATGGAGAAGTAACCAA
CAGCTGGTCAGTAAATTACACGATGACTCGTACCAGTCACGCAAACTATT
GAATGTAAATAATGAAACTACGACAACGAAAGCCCCAGTTACACCACAGG
GTATCGGTGACTACCCAAAGGATCTATTTACTGTCGAACAAAAGAAGAAC
GGGTGGATTGCTCTACATGTAATCGGGGTTTTATACATGTTCTTAGCTTT
GGCTATCATATGTGATGAATTTTTTGTGCCTGCTTTACACGTTATTTCTT
CTATCTTGAAGATATCAGACGACGTAGCTGGTGCTACTTTCATGGCAGCA
GGCGGTAGCGCCCCAGAACTTTTCACATCCATCATTGGGGTGTTTTTCTC
CGATTCACAAGTTGGATTTGGTACTATAGTAGGGAGTGCTGTATTCAACG
TACTTTTTGTGATCGGCATGTGCGCTATGTGCAGCAAAACCCTCTTGAAC
TTAACATGGTGGCCACTGCTTAGAGACAGTATTTTCTACATCATAGCTTT
GATTCTACTCATTATATTCTTCTCGGACAGTTCCATATCATGGCACGAAT
CATTGGGCTTGTTTCTAGTCTATATCGCTTACGTCATCTTCATGATCAAG
AACAGTAGTATAGAGATGGCTGTCAAAGCTTATATTTCGAAGAAAACAAG
GGCGTCAAGTGTGACACCCATCATCGATGAAAAGAACGAAAATGGTTTTC
TTTCGTTACCATCGATGTTTTCGAAGAATTCGTTTCGCAATGGTGCCATA
CAGCTTGTCATTCATACGCTTGACCCCATCGCTGAAGCTGGCGTGGATGA
TAAGCTCCAAAAGATCAAAGATCATTATGACACAATTTCAACGGATCAAC
AGAAAGGTCTTTCTACCTCCTTGTTGGACGAAAAAGAGTTGACGTCACCT
AACCAATCAGAAACCACCATTCTTCATGATGATTACAATAGCCAAAGGGG
ACCATCAGAAACGAGTGTTGCACACTCCAGAATTTCGCATGGCAAAGAGG
AGATTGAAATGATGGAGAGGAACAATCAGAATAGCTCCACAGAGGCTATC
AACGGCCATGCTACAAAACCAGTACCAAATAATGATGCTAAAAACCATCC
CAACTCTACTCAAGATAGCCGACCCAACTCCGTCGCGTCATTGTTTAATG
ACAATGACGTCAATCAGAATAACGGCGATACTGTCAATCGTAATGGTGTC
GGTATGATTGATGACGCATCCCGACGAAACTCGGTACGGTTCTCGTCACG
ACGACTATCGAGATGTTCGTCGAGAGCAAGTTGTCGGAGTCACCGAGGGT
TAGCACCGGTCAAGAAAGAGTCACCCGTCGAAGATATTAAAGATCCAGAG
GACGGTGAAGGTGATGACACAGGCgatgaagaggaagaagaagaaggacc
AGTGGATTTGAGTTGGCCTGATGAAATTTTCGAACGTATCTTCTACGTCA
TCAAAGCACCTTTACTCTTCGTCATGGTCTTGACTGTACCTGATGTTCGG
CGACCGaaatttaaaaagttgtttCCACTGACGTTTACGTTGAGCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027631XLOC_027631Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043970-proteinTCONS_00043970-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043970-exon-sc0004792-1491911889:1082..2404TCONS_00043970-exon-sc0004792-1491911889:1082..2404Clytia hemisphaericaexon
TCONS_00043970-exon-sc0004792-1510915933:1082..2404TCONS_00043970-exon-sc0004792-1510915933:1082..2404Clytia hemisphaericaexon
TCONS_00043970-exon-sc0004792-1575043694:1082..2404TCONS_00043970-exon-sc0004792-1575043694:1082..2404Clytia hemisphaericaexon
TCONS_00043970-exon-sc0004792-1491911889:2686..2779TCONS_00043970-exon-sc0004792-1491911889:2686..2779Clytia hemisphaericaexon
TCONS_00043970-exon-sc0004792-1510915933:2686..2779TCONS_00043970-exon-sc0004792-1510915933:2686..2779Clytia hemisphaericaexon
TCONS_00043970-exon-sc0004792-1575043694:2686..2779TCONS_00043970-exon-sc0004792-1575043694:2686..2779Clytia hemisphaericaexon
TCONS_00043970-exon-sc0004792-1491911889:4030..4241TCONS_00043970-exon-sc0004792-1491911889:4030..4241Clytia hemisphaericaexon
TCONS_00043970-exon-sc0004792-1510915933:4030..4241TCONS_00043970-exon-sc0004792-1510915933:4030..4241Clytia hemisphaericaexon
TCONS_00043970-exon-sc0004792-1575043694:4030..4241TCONS_00043970-exon-sc0004792-1575043694:4030..4241Clytia hemisphaericaexon
TCONS_00043970-exon-sc0004792-1491911889:4588..4938TCONS_00043970-exon-sc0004792-1491911889:4588..4938Clytia hemisphaericaexon
TCONS_00043970-exon-sc0004792-1510915933:4588..4938TCONS_00043970-exon-sc0004792-1510915933:4588..4938Clytia hemisphaericaexon
TCONS_00043970-exon-sc0004792-1575043694:4588..4938TCONS_00043970-exon-sc0004792-1575043694:4588..4938Clytia hemisphaericaexon
TCONS_00043970-exon-sc0004792-1491911889:5198..5353TCONS_00043970-exon-sc0004792-1491911889:5198..5353Clytia hemisphaericaexon
TCONS_00043970-exon-sc0004792-1510915933:5198..5353TCONS_00043970-exon-sc0004792-1510915933:5198..5353Clytia hemisphaericaexon
TCONS_00043970-exon-sc0004792-1575043694:5198..5353TCONS_00043970-exon-sc0004792-1575043694:5198..5353Clytia hemisphaericaexon
TCONS_00043970-exon-sc0004792-1491911889:5556..5599TCONS_00043970-exon-sc0004792-1491911889:5556..5599Clytia hemisphaericaexon
TCONS_00043970-exon-sc0004792-1510915933:5556..5599TCONS_00043970-exon-sc0004792-1510915933:5556..5599Clytia hemisphaericaexon
TCONS_00043970-exon-sc0004792-1575043694:5556..5599TCONS_00043970-exon-sc0004792-1575043694:5556..5599Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004792supercontigsc0004792:1082..5599 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.30015	1.77873	0.630533	0.139204	21.8116	14.89	29.4218	30.0245	17.2056	22.9483	13.3345	11.8606	6.95712	7.22339	1.13999	1.53188	5.38882	6.07137	11.0959	8.61935	9.00347	7.52922	3.60012	5.02192	8.40678	8.01862	4.36451	3.63541	0.39474	0.182778
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004837NaCa_Exmemb
IPR004481K/Na/Ca-exchanger
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00043970 vs. Swiss-Prot (Human)
Match: NCKX2 (Sodium/potassium/calcium exchanger 2 OS=Homo sapiens GN=SLC24A2 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.659e-70
Identity = 152/309 (49.19%), Postives = 198/309 (64.08%), Query Frame = 1 
Query:  661 YQSRKLLNVNNETT--TTKAPVTPQG---------IGDYPKDLFTVEQKKNGWIALHVIGVLYMFLALAIICDEFFVPALHVISSILKISDDVAGATFMAAGGSAPELFTSIIGVFFSDSQVGFGTIVGSAVFNVLFVIGMCAMCSKTLLNLTWWPLLRDXXXXXXXXXXXXXXXXXXXXXWHESLGLFLVYIAYVIFMIKNSSIEMAVKAYISKKTRASSVTP-------IIDEKNENGFLSLPSMFSKNS--------FRNGAIQLVIHTLDPIA-EAGVDDKLQKIKDHYDTISTDQQKGLSTSLL 1506
            Y  R LL++N++    T + P++ +G          GDYPKD+F++E+++ G I LHVIG++YMF+ALAI+CDEFFVP+L VI+  L ISDDVAGATFMAAGGSAPELFTS+IGVF + S VG GTIVGSAVFN+LFVIGMCA+ S+ +LNLTWWPL RD  FYI+ LI+LIIFF D+ I W ESL L   Y  YV+FM  N  +E  VK  I++        P          +K+E    + P +    S         RN   QL+IHTLDP+A E G   KL+    +YDT++ + +     S+L
Sbjct:   82 YHQRTLLDLNDKILDYTPQPPLSKEGESENSTDHAQGDYPKDIFSLEERRKGAIILHVIGMIYMFIALAIVCDEFFVPSLTVITEKLGISDDVAGATFMAAGGSAPELFTSLIGVFIAHSNVGIGTIVGSAVFNILFVIGMCALFSREILNLTWWPLFRDVSFYIVDLIMLIIFFLDNVIMWWESLLLLTAYFCYVVFMKFNVQVEKWVKQMINRNKVVKVTAPEAQAKPSAARDKDEPTLPAKPRLQRGGSSASLHNSLMRNSIFQLMIHTLDPLAEELGSYGKLK----YYDTMTEEGRFREKASIL 386
The following BLAST results are available for this feature:
BLAST of TCONS_00043970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCKX22.659e-7049.19Sodium/potassium/calcium exchanger 2 OS=Homo sapie... [more]
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