TCONS_00043970-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00043970-protein
Unique Name	TCONS_00043970-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	586

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00043970-protein ID=TCONS_00043970-protein|Name=TCONS_00043970-protein|organism=Clytia hemisphaerica|type=polypeptide|length=586bp
MTTDLKQYSKTYHPMTSSSSSSGKHRRYKRRQTHIFIKLVCITVTLTTVL
VFLTLYKYLDSKQSKWRSNQQLVSKLHDDSYQSRKLLNVNNETTTTKAPV
TPQGIGDYPKDLFTVEQKKNGWIALHVIGVLYMFLALAIICDEFFVPALH
VISSILKISDDVAGATFMAAGGSAPELFTSIIGVFFSDSQVGFGTIVGSA
VFNVLFVIGMCAMCSKTLLNLTWWPLLRDSIFYIIALILLIIFFSDSSIS
WHESLGLFLVYIAYVIFMIKNSSIEMAVKAYISKKTRASSVTPIIDEKNE
NGFLSLPSMFSKNSFRNGAIQLVIHTLDPIAEAGVDDKLQKIKDHYDTIS
TDQQKGLSTSLLDEKELTSPNQSETTILHDDYNSQRGPSETSVAHSRISH
GKEEIEMMERNNQNSSTEAINGHATKPVPNNDAKNHPNSTQDSRPNSVAS
LFNDNDVNQNNGDTVNRNGVGMIDDASRRNSVRFSSRRLSRCSSRASCRS
HRGLAPVKKESPVEDIKDPEDGEGDDTGDEEEEEEGPVDLSWPDEIFERI
FYVIKAPLLFVMVLTVPDVRRPKFKKLFPLTFTLSI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_027631	XLOC_027631	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00043970	TCONS_00043970	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004837	NaCa_Exmemb
IPR004481	K/Na/Ca-exchanger

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004837	Sodium/calcium exchanger membrane region	PFAM	PF01699	Na_Ca_ex	coord: 127..269 e-value: 1.7E-25 score: 89.7
None	No IPR available	GENE3D	1.10.287.70		coord: 22..246 e-value: 0.0044 score: 16.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 499..538
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 353..399
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 416..474
IPR004481	Sodium/potassium/calcium exchanger	TIGRFAM	TIGR00367	TIGR00367	coord: 125..284 e-value: 3.0E-55 score: 185.5

Blast

[Close]

BLAST of TCONS_00043970-protein vs. Swiss-Prot (Human)
Match: NCKX2 (Sodium/potassium/calcium exchanger 2 OS=Homo sapiens GN=SLC24A2 PE=1 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 4.181e-84
Identity = 162/364 (44.51%), Postives = 221/364 (60.71%), Query Frame = 0

Query:   20 SSSGKHRRYKRRQTHIFIKLVCI---TVTLTTVLVFLTLYKYLDSKQSKWRSNQQLVSKLH-DDSYQSRKLLNVNNETT--TTKAPVTPQG---------IGDYPKDLFTVEQKKNGWIALHVIGVLYMFLALAIICDEFFVPALHVISSILKISDDVAGATFMAAGGSAPELFTSIIGVFFSDSQVGFGTIVGSAVFNVLFVIGMCAMCSKTLLNLTWWPLLRDSIFYIIALILLIIFFSDSSISWHESLGLFLVYIAYVIFMIKNSSIEMAVKAYISKKTRASSVTP-------IIDEKNENGFLSLPSMFSKNS--------FRNGAIQLVIHTLDPIAEA-GVDDKLQKIKDHYDTISTD 352
            S SG  R Y  ++    I+++ +    V ++TV   ++ +   D++ +       +VS       Y  R LL++N++    T + P++ +G          GDYPKD+F++E+++ G I LHVIG++YMF+ALAI+CDEFFVP+L VI+  L ISDDVAGATFMAAGGSAPELFTS+IGVF + S VG GTIVGSAVFN+LFVIGMCA+ S+ +LNLTWWPL RD  FYI+ LI+LIIFF D+ I W ESL L   Y  YV+FM  N  +E  VK  I++        P          +K+E    + P +    S         RN   QL+IHTLDP+AE  G   KL+    +YDT++ +
Sbjct:   20 SLSGCRRHYSVKKKLKLIRVLGLFMGLVAISTVSFSISAFSETDTQST---GEASVVSGPRVAQGYHQRTLLDLNDKILDYTPQPPLSKEGESENSTDHAQGDYPKDIFSLEERRKGAIILHVIGMIYMFIALAIVCDEFFVPSLTVITEKLGISDDVAGATFMAAGGSAPELFTSLIGVFIAHSNVGIGTIVGSAVFNILFVIGMCALFSREILNLTWWPLFRDVSFYIVDLIMLIIFFLDNVIMWWESLLLLTAYFCYVVFMKFNVQVEKWVKQMINRNKVVKVTAPEAQAKPSAARDKDEPTLPAKPRLQRGGSSASLHNSLMRNSIFQLMIHTLDPLAEELGSYGKLK----YYDTMTEE 376

The following BLAST results are available for this feature:

BLAST of TCONS_00043970-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00043970-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NCKX2	4.181e-84	44.51	Sodium/potassium/calcium exchanger 2 OS=Homo sapie...	[more]

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TCONS_00043970-protein (polypeptide) - C. hemisphaerica