TCONS_00041991 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041991
Unique NameTCONS_00041991
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length922

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041991 ID=TCONS_00041991|Name=TCONS_00041991|organism=Clytia hemisphaerica|type=transcript|length=922bp
NNATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAAC
AACGTCTTATCTTTGCCGGTAAACAACTTGAGGATGGCCGCACCTTGTCT
GACTACAACATCCAAAAGGAATCAACCCTTCATTTGGTCTTGCGATTGAG
AGGAGGTATGCAAATCTTTGTCAAAACCCTCACTGGCAAAACCATCACCT
TGGAAGTTGAACCAAGTGACACAATCGACAATGTGAAAGCTAAAATCCAA
GACAAAGAAGGTATCCCACCAGATCAACAACGTCTCATCTTTGCTGGCAA
ACAATTGGAAGATGGTCGAACCCTCTCTGATTATAATATCCAAAAAGAAT
CAACCCTTCACTTGGTCTTGCGACTCCGTGGTGGGTGTTGATTAAACAAG
TTATCATAAACAAGAGACAATACATTCTAGTATATTAAAGTCATGACTTG
TAACACTTAATTAGCACATCTTAAATCTTAATAAATGCAATTTTACTGGA
TAATCCTGTTTTGTGTTAATGTCATTCCCTTTtactttcttttgaaattt
cggCAATTTACTTCTTAATCTTTGCATCAAAATTCTCACACTTTTGACCA
AAATTGGAAATTGTACTCAAAAAATCTAAGTATTTGATTAATTTGTGAGT
AGGTTGAACTTGAAGGAAATTTGGCAAACAAATTTGTAGAATCGAAAAAA
TGCCCCAAAGTTAGTAACAATTCTGTCTCAGTAGTCCATTCAGGCTCATT
TGGATAAAAGGTTATTTTGATTTGTTAAAGAAAAAACTAACTTGATTAAA
TATTTatgtttaaatttgtttttacgCAGTTTTTTACTGTTTCCTCCCTA
AACCTCGACAGTTAGGTGCactaaaagtcttctatataaaTTTTTAGAGC
TTTCAAATGGTAATAATTTGTC
Run BLAST on NCBI

protein sequence of TCONS_00041991-protein

>TCONS_00041991-protein ID=TCONS_00041991-protein|Name=TCONS_00041991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
XVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
GGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
QLEDGRTLSDYNIQKESTLHLVLRLRGGC
Run BLAST on NCBI

transcript from alignment at sc0003136:4936..6085+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041991 ID=TCONS_00041991|Name=TCONS_00041991|organism=Clytia hemisphaerica|type=transcript|length=1150bp|location=Sequence derived from alignment at sc0003136:4936..6085+ (Clytia hemisphaerica)
NNATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAAC
AACGTCTTATCTTTGCCGGTAAACAACTTGAGGATGGCCGCACCTTGTCT
GACTACAACATCCAAAAGGAATCTACTCTCCACTTGGTCTTACGTTTGAG
AGGAGGTATGCAAATCTTTGTTAAAACCCTCACTGGCAAAACCATCACCT
TGGAAGTGGAACCAAGTGATACCATTGATAACGtgaaagccaaaatccaa
gacAAAGAAGGTATCCCACCAGACCAACAACGTCTCATCTTTGCAGGCAA
ACAATTGGAAGATGGACGCACCCTTTCTGACTACAACATCCAAAAGGAAT
CAACCCTTCATTTGGTCTTGCGATTGAGAGGAGGTATGCAAATCTTTGTC
AAAACCCTCACTGGCAAAACCATCACCTTGGAAGTTGAACCAAGTGACAC
AATCGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAG
ATCAACAACGTCTCATCTTTGCTGGCAAACAATTGGAAGATGGTCGAACC
CTCTCTGATTATAATATCCAAAAAGAATCAACCCTTCACTTGGTCTTGCG
ACTCCGTGGTGGGTGTTGATTAAACAAGTTATCATAAACAAGAGACAATA
CATTCTAGTATATTAAAGTCATGACTTGTAACACTTAATTAGCACATCTT
AAATCTTAATAAATGCAATTTTACTGGATAATCCTGTTTTGTGTTAATGT
CATTCCCTTTtactttcttttgaaatttcggCAATTTACTTCTTAATCTT
TGCATCAAAATTCTCACACTTTTGACCAAAATTGGAAATTGTACTCAAAA
AATCTAAGTATTTGATTAATTTGTGAGTAGGTTGAACTTGAAGGAAATTT
GGCAAACAAATTTGTAGAATCGAAAAAATGCCCCAAAGTTAGTAACAATT
CTGTCTCAGTAGTCCATTCAGGCTCATTTGGATAAAAGGTTATTTTGATT
TGTTAAAGAAAAAACTAACTTGATTAAATATTTatgtttaaatttgtttt
tacgCAGTTTTTTACTGTTTCCTCCCTAAACCTCGACAGTTAGGTGCact
aaaagtcttctatataaaTTTTTAGAGCTTTCAAATGGTAATAATTTGTC

Coding sequence (CDS) from alignment at sc0003136:4936..6085+

>TCONS_00041991 ID=TCONS_00041991|Name=TCONS_00041991|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at sc0003136:4936..6085+ (Clytia hemisphaerica)
NATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAACA
ACGTCTTATCTTTGCCGGTAAACAACTTGAGGATGGCCGCACCTTGTCTG
ACTACAACATCCAAAAGGAATCAACCCTTCATTTGGTCTTGCGATTGAGA
GGAGGTATGCAAATCTTTGTCAAAACCCTCACTGGCAAAACCATCACCTT
GGAAGTTGAACCAAGTGACACAATCGACAATGTGAAAGCTAAAATCCAAG
ACAAAGAAGGTATCCCACCAGATCAACAACGTCTCATCTTTGCTGGCAAA
CAATTGGAAGATGGTCGAACCCTCTCTGATTATAATATCCAAAAAGAATC
AACCCTTCACTTGGTCTTGCGACTCCGTGGTGGGTGTTGANATGTGAAAG
CTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAACAACGTCTTATC
TTTGCCGGTAAACAACTTGAGGATGGCCGCACCTTGTCTGACTACAACAT
CCAAAAGGAATCAACCCTTCATTTGGTCTTGCGATTGAGAGGAGGTATGC
AAATCTTTGTCAAAACCCTCACTGGCAAAACCATCACCTTGGAAGTTGAA
CCAAGTGACACAATCGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGG
TATCCCACCAGATCAACAACGTCTCATCTTTGCTGGCAAACAATTGGAAG
ATGGTCGAACCCTCTCTGATTATAATATCCAAAAAGAATCAACCCTTCAC
TTGGTCTTGCGACTCCGTGGTGGGTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025879XLOC_025879Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041991-proteinTCONS_00041991-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041991-exon-sc0003136-1491911889:4936..5044TCONS_00041991-exon-sc0003136-1491911889:4936..5044Clytia hemisphaericaexon
TCONS_00041991-exon-sc0003136-1510915933:4936..5044TCONS_00041991-exon-sc0003136-1510915933:4936..5044Clytia hemisphaericaexon
TCONS_00041991-exon-sc0003136-1575043694:4936..5044TCONS_00041991-exon-sc0003136-1575043694:4936..5044Clytia hemisphaericaexon
TCONS_00041991-exon-sc0003136-1491911889:5273..6085TCONS_00041991-exon-sc0003136-1491911889:5273..6085Clytia hemisphaericaexon
TCONS_00041991-exon-sc0003136-1510915933:5273..6085TCONS_00041991-exon-sc0003136-1510915933:5273..6085Clytia hemisphaericaexon
TCONS_00041991-exon-sc0003136-1575043694:5273..6085TCONS_00041991-exon-sc0003136-1575043694:5273..6085Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003136supercontigsc0003136:4936..6085 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
268.862	260.861	390.513	419.38	1.09968	0.864147	1.1835	0.882423	152.687	217.382	223.745	241.042	167.212	171.303	151.138	136.245	186.762	162.611	204.795	329.445	153.536	216.693	267.848	228.873	2.21965	1.92965	242.674	279.37	232.691	237.461
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin
IPR000626Ubiquitin_dom
IPR019954Ubiquitin_CS
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00041991 vs. Swiss-Prot (Human)
Match: UBB (Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 1.281e-84
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 2 
Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 388
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct:  102 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 229

HSP 2 Score: 253.447 bits (646), Expect = 6.365e-83
Identity = 126/128 (98.44%), Postives = 127/128 (99.22%), Query Frame = 2 
Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 388
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 153

HSP 3 Score: 152.14 bits (383), Expect = 8.749e-44
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 2 
Query:  158 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 388
            MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 77
The following BLAST results are available for this feature:
BLAST of TCONS_00041991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBB1.281e-8499.22Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1[more]
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