TCONS_00041991-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00041991-protein
Unique NameTCONS_00041991-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length129

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00041991-protein ID=TCONS_00041991-protein|Name=TCONS_00041991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
XVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
GGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
QLEDGRTLSDYNIQKESTLHLVLRLRGGC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_025879XLOC_025879Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00041991TCONS_00041991Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin
IPR000626Ubiquitin_dom
IPR019954Ubiquitin_CS
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019956UbiquitinPRINTSPR00348UBIQUITINcoord: 63..83
score: 84.16
coord: 84..104
score: 95.05
coord: 105..126
score: 92.03
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 53..124
e-value: 9.0E-36
score: 134.8
coord: 1..48
e-value: 1.2E-7
score: 41.5
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 2..50
e-value: 2.3E-22
score: 78.4
coord: 55..126
e-value: 1.5E-34
score: 117.5
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 1..52
score: 22.896
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 53..128
score: 30.888
NoneNo IPR availableGENE3D3.10.20.90coord: 54..129
e-value: 1.0E-44
score: 149.7
NoneNo IPR availableGENE3D3.10.20.90coord: 1..53
e-value: 8.3E-29
score: 98.7
NoneNo IPR availableCDDcd01803Ubiquitincoord: 53..128
e-value: 1.42063E-50
score: 156.569
IPR019954Ubiquitin conserved sitePROSITEPS00299UBIQUITIN_1coord: 79..104
IPR019954Ubiquitin conserved sitePROSITEPS00299UBIQUITIN_1coord: 3..28
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 52..128
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 2..52

Blast
[Close]
BLAST of TCONS_00041991-protein vs. Swiss-Prot (Human)
Match: UBB (Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.916e-89
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0 
Query:    2 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 129
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct:  102 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 229

HSP 2 Score: 253.447 bits (646), Expect = 2.041e-87
Identity = 126/128 (98.44%), Postives = 127/128 (99.22%), Query Frame = 0 
Query:    2 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 129
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 153

HSP 3 Score: 152.14 bits (383), Expect = 1.641e-47
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0 
Query:   53 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 129
            MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 77
The following BLAST results are available for this feature:
BLAST of TCONS_00041991-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBB3.916e-8999.22Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1[more]
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