|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041499 ID=TCONS_00041499|Name=TCONS_00041499|organism=Clytia hemisphaerica|type=transcript|length=3091bp
ACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGGTGTTGTCTTTGT
TTCTGTCGGTTGCACGACTTCAGTCTGTGTCACTGGTGATTGGACAACTT
CGGTTGTAGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGCTGCACGACT
TCTGTCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGG
TGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGTCACTGGTG
GCTGAACAACTTTGGTTGTAGCGACTATCGGTGTTGTCTTTGTTTCTGTC
GCTTGTACGACTTCTGTCTGGCTAACTGAAGGTTGCACGACCTCTGTCTG
GGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGGTGTTGTCT
TTGTTTCTGTCGGTTGCACGACATCTGTCTGGGTCACTGGTGGCTGAACA
ACTTCAGTTGTAGCGACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCAC
GACTTCTGTCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTA
TCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGTCACT
GGTGGCTGAACAACTTTGGTTGTAGCGACTATCGGTGTTGTCTTTGTTTC
TGTCGCTTGTACGACTTCTGTCTGGCTAACTGAAGGTTGCACGACCTCTG
TCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGGTGTT
GTCTTTGTTTCTGTCGGTTGCACGACATCTGTCTGGGTCACTGGTGGCTG
AACAACTTTGGTTGTAGCAACTATTGGTGTTGTCTTTGTTTCTGTCGGTT
GCACGACTTCTGTCTGGGTCACTGGTGGCTGAACAACTTCGGTTGTAGCA
ACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGT
CACTGGTGGCTGAACAACTTTGGTTGTAGCAACTATCGGTGTTGTCTTTG
TTTCTGTCGGTTGCACGACCTCTGTCTGGGTCACTGGTGGCTGAACAACT
TTGGTTGTAGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGAC
TTCTGTCTGTGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATTG
GTGTTGTCCTTGTTTCTGTCGGTTGCACGACTTCAGTCTGTGTCACTGGT
GGTTGGACAAGTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGCTTCTGT
CGGTTGCACGACTTCAGTCTGTGTCACTGGTGGCTGAATAACTTCAGTTG
TAGCAACTATCGGTGTTGTCTTTGTCTCTGAAGGTTGCACGACTTCTGTC
TGACTGACTGAAGGTTGTACGACTACAGTTCCGGTTGCTGGTGGCTGAAC
AACTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGTCTCTGAAGGTTGCA
CGACTTCTGTCTGACTGACTGAAGGTTGTACGACTACAGTTCCGGTTGCT
GGTGGCTGAACAACTTCGGTTGTAGCAACTATCGGTGTCGTCTTTGTTTC
TGTTAGTTGCACGACAGTTGTTTGGGGGCCAGGCTGCTCAACAAAACTGG
TCGTAGGAGTGGCTAATTGACTGATCACTGAAGTGCTTGGCAATATCATT
GACGAGGAGACAACAATCTTTTTACAAGTTGTTTTATTACCAGGAATAAC
TTCATATCCGTCTCTACAAACACATTGGAAATGTGACCCTTGTCCTGGTG
TTGGTCGACACACAGTTGATTGAAGGTTGCAGTTGTGATCACCAGATGCA
CAGAAATCTAAACATTTGTTGATTGAGTTTCCTTCTTTCAAATACCCCGG
CTTGCAAGTACAATTGTGGTAAGGATTTGTAAGAGTGTTGTTACAAGATG
ATGTTGTCTTGTTGCAAGTATCGTCTCCCGTGTCACAAGGTCTTGGAATC
GGTGTACAACTGTCCGTGTCATTTCCTAATCTTTCAAAACCATCTTTGCA
AGGACATTCGTAATGTCGCCCTTTGCCAGGAGTAGACAAGCATGTTGTAG
ATACATCGTTGCAAGTATCAGCCTCAATGCGACAATACTCATGACATTGA
TCCAAGGAGTTGTTAAACTTCAAATAACCATCTTCACAGGTACAATTGTA
GTAGAAAGGAGCTTCGAAGGTGTTTGTACAGTTGGATGAAGTTTTATTAC
AAGTATCTTTCCCTGTGTCACAAGGTCTTGGCATCGGCGTACATTTGTCC
ATGTTGTTGTCGAGTCTCTCAAAGCCATGTTTACATGGGCATTCGTAGTG
TCGTCCTTTGCCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTGCAAG
TATCAGCCTCAATACGACAATACTCATGACATTGATCCAAGGAGTTGTTA
AACTTCAAATAACCATCTTCACAGGTACAATTGTAGTAGAAAGGAGCTTC
GAAGCTGTTTGTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTCCCTG
TGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTTATCTAAT
CTCTCGAAACCAAATTTACATGGACATTCATAATGTCGTCCTTTGCCAGG
AGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCAATAT
GACAGTAGTCTTGACAATCATCAACTGAGTTGTTGAATTTGAGATAACCA
TCACCACACGAGCAGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTGTGCA
ATTGGATCGTGTCTTGTTACAAGTATCTTTCCCTGTATCACAAGGTCTTG
GCATCGGTGTACATGAGTCCGTGTTGTTATCGAGTCTCTCAAATCCATGT
TTACAAGGACATTCGTAATGCCGCCCTTTACCAGGTGTCGCCAAACACGT
CGTTGATGTGTCGTTACATGTGTCGGAGTTATCAACGCAAAAGTCGAAAC
ATGTCGTATGATTTTGTTTGACATATCCGGCTGAACAGTTACAGTCAAAG
TAGTTTGGATGCGTGTAAGTATCGATACATGTTGATATATCTTTATCACA
AGTATCATTTCCCCAAGCACATGGAGTATCGGCTAGTGTGC Run BLAST on NCBI transcript from alignment at sc0002895:16461..22401+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041499 ID=TCONS_00041499|Name=TCONS_00041499|organism=Clytia hemisphaerica|type=transcript|length=5941bp|location=Sequence derived from alignment at sc0002895:16461..22401+ (Clytia hemisphaerica)
ACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGGTGTTGTCTTTGT
TTCTGTCGGTTGCACGACTTCAGTCTGTGTCACTGGTGATTGGACAACTT
CGGTTGTAGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGCTGCACGACT
TCTGTCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGG
TGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGTCACTGGTG
GCTGAACAACTTTGGTTGTAGCGACTATCGGTGTTGTCTTTGTTTCTGTC
GCTTGTACGACTTCTGTCTGGCTAACTGAAGGTTGCACGACCTCTGTCTG
GGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGGTGTTGTCT
TTGTTTCTGTCGGTTGCACGACATCTGTCTGGGTCACTGGTGGCTGAACA
ACTTCAGTTGTAGCGACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCAC
GACTTCTGTCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTA
TCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGTCACT
GGTGGCTGAACAACTTTGGTTGTAGCGACTATCGGTGTTGTCTTTGTTTC
TGTCGCTTGTACGACTTCTGTCTGGCTAACTGAAGGTTGCACGACCTCTG
TCTGGGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATCGGTGTT
GTCTTTGTTTCTGTCGGTTGCACGACATCTGTCTGGGTCACTGGTGGCTG
AACAACTTTGGTTGTAGCAACTATTGGTGTTGTCTTTGTTTCTGTCGGTT
GCACGACTTCTGTCTGGGTCACTGGTGGCTGAACAACTTCGGTTGTAGCA
ACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGACCTCTGTCTGGGT
CACTGGTGGCTGAACAACTTTGGTTGTAGCAACTATCGGTGTTGTCTTTG
TTTCTGTCGGTTGCACGACCTCTGTCTGGGTCACTGGTGGCTGAACAACT
TTGGTTGTAGCAACTATCGGTGTTGTCTTTGTTTCTGTCGGTTGCACGAC
TTCTGTCTGTGTCACTGGTGGCTGAACAACTTCAGTTGTAGCAACTATTG
GTGTTGTCCTTGTTTCTGTCGGTTGCACGACTTCAGTCTGTGTCACTGGT
GGTTGGACAAGTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGCTTCTGT
CGGTTGCACGACTTCAGTCTGTGTCACTGGTGGCTGAATAACTTCAGTTG
TAGCAACTATCGGTGTTGTCTTTGTCTCTGAAGGTTGCACGACTTCTGTC
TGACTGACTGAAGGTTGTACGACTACAGTTCCGGTTGCTGGTGGCTGAAC
AACTTCGGTTGTAGCAACTATCGGTGTTGTCTTTGTCTCTGAAGGTTGCA
CGACTTCTGTCTGACTGACTGAAGGTTGTACGACTACAGTTCCGGTTGCT
GGTGGCTGAACAACTTCGGTTGTAGCAACTATCGGTGTCGTCTTTGTTTC
TGTTAGTTGCACGACAGTTGTTTGGGGGCCAGGCTGCTCAACAAAACTGG
TCGTAGGAGTGGCTAATTGACTGATCACTGAAGTGCTTGGCAATATCATT
GACGAGGAGACAACAATCTTTTTACAAGTTGTTTTATTACCAGGAATAAC
TTCATATCCGTCTCTACAAACACATTGGAAATGTGACCCTTGTCCTGGTG
TTGGTCGACACACAGTTGATTGAAGGTTGCAGTTGTGATCACCAGATGCA
CAGAAATCTAAACATTTGTTGATTGAGTTTCCTTCTTTCAAATACCCCGG
CTTGCAAGTACAATTGTGGTAAGGATTTGTAAGAGTGTTGTTACAAGATG
ATGTTGTCTTGTTGCAAGTATCGTCTCCCGTGTCACAAGGTCTTGGAATC
GGTGTACAACTGTCCGTGTCATTTCCTAATCTTTCAAAACCATCTTTGCA
AGGACATTCGTAATGTCGCCCTTTGCCAGGAGTAGACAAGCATGTTGTAG
ATACATCGTTGCAAGTATCAGCCTCAATGCGACAATACTCATGACATTGA
TCCAAGGAGTTGTTAAACTTCAAATAACCATCTTCACAGGTACAATTGTA
GTAGAAAGGAGCTTCGAAGGTGTTTGTACAGTTGGATGAAGTTTTATTAC
AAGTATCTTTCCCTGTGTCACAAGGTCTTGGCATCGGCGTACATTTGTCC
ATGTTGTTGTCGAGTCTCTCAAAGCCATGTTTACATGGACATTCGTAGTG
TCGTCCTTTGCCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTGCAGG
TATCAGCCTCAATACGACAATACTCATGACATTGATCCAAGGAGCTGTTA
AACTTCAAATAACCAGCTTCACAGGTACAATTGTAGTAGAAAGGAGCTTC
GAAGCTGTTTGTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTCCCTG
TGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTTATCTAAT
CTCTCGAAACCAAATTTACATGGACATTCATAATGTCGTCCTTTACCAGG
AGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCAATAT
GACAGTAGTCTTGACAATCATCAACGGAGTTGTTGAATTTGAGATAACCA
TCACCACACGAGCAGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTGTGCA
ATTGGATCTTGTCTTGTTACAAGTATCTTTCCCTGTGTCACAAGGTCTTG
GCATCGGCGTACATTTGTCCATGTTGTTGTCGAGTCTCTCAAAGCCATGT
TTACATGGACATTCGTAGTGTCGTCCTTTGCCAGGAGTAGACATACAAGT
TGTAGAGGTTGTATTGCAGGTATCAGCCTCAATACGACAATACTCATGAC
ATTGATCCAAGGAGCTGTTAAACTTCAAATAACCAGCTTCACAGGTACAA
TTGTAGTAGAAAGGAGCTTCGAAGCTGTTTGTACAGTTGGATGAAGTTTT
ATTGCAAGTATCTTTCCCTGTGTCGCAAGGTCTTGGCATTGGTGTGCAAC
TGTCTGTGTTGTTATCTAATCTCTCGAAACCAAATTTACATGGACATTCA
TAATGTCGTCCTTTACCAGGAGTTGCCTCACACATCGTTGAAGTTTTGTT
GCAGGAATCAGCTTCAATATGACAGTAGTCTTGACAATCATCAACGGAGT
TGTTGAATTTGAGATAACCATCACCACACGAGCAGTTGAAGTAAACCGGA
GCTGTCAAAGTGTTTGTGCAATTGGATCTTGTCTTGTTACAAGTATCTTT
CCCTGTGTCACAAGGTCTTGGCATCGGCGTACATTTGTCCATGTTGTTGT
CGAGTCTCTCAAAGCCATGTTTACATGGACATTCGTAGTGTCGTCCTTTG
CCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTGCAGGTATCAGCCTC
AATACGACAATACTCATGACATTGATCCAAGGAGCTGTTAAACTTCAAAT
AACCAGCTTCACAGGTACAATTGTAGTAGAAAGGAGCTTCGAAGCTGTTT
GTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTCCCTGTGTCGCAAGG
TCTTGGCATTGGTGTGCAACTGTCTGTGTTGTTATCTAATCTCTCGAAAC
CAAATTTACATGGACATTCATAATGTCGTCCTTTACCAGGAGTTGCCTCA
CACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCAATATGACAGTAGTC
TTGACAATCATCAACGGAGTTGTTGAATTTGAGATAACCATCACCACACG
AGCAGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTGTGCAATTGGATCTT
GTCTTGTTACAAGTATCTTTCCCTGTGTCACAAGGTCTTGGCATCGGCGT
ACATTTGTCCATGTTGTTGTCGAGTCTCTCAAAGCCATGTTTACATGGAC
ATTCGTAGTGTCGTCCTTTGCCAGGAGTAGACATACAAGTTGTAGAGGTT
GTATTGCAGGTATCAGCCTCAATACGACAATACTCATGACATTGATCCAA
GGAGCTGTTAAACTTCAAATAACCAGCTTCACAGGTACAATTGTAGTAGA
AAGGAGCTTCGAAGCTGTTTGTACAGTTGGATGAAGTTTTATTGCAAGTA
TCTTTCCCTGTGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTT
GTTATCTAATCTCTCGAAACCAAATTTACATGGACATTCATAATGTCGTC
CTTTACCAGGAGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGAATCA
GCTTCAATATGACAGTAGTCTTGACAATCATCAACGGAGTTGTTGAATTT
GAGATAACCATCACCACACGAGCAGTTGAAGTAAACCGGAGCTGTCAAAG
TGTTTGTGCAATTGGATCTTGTCTTGTTACAAGTATCTTTCCCTGTGTCA
CAAGGTCTTGGCATCGGCGTACATTTGTCCATGTTGTTGTCGAGTCTCTC
AAAGCCATGTTTACATGGACATTCGTAGTGTCGTCCTTTGCCAGGAGTAG
ACATACAAGTTGTAGAGGTTGTATTGCAGGTATCAGCCTCAATACGACAA
TACTCATGACATTGATCCAAGGAGCTGTTAAACTTCAAATAACCAGCTTC
ACAGGTACAATTGTAGTAGAAAGGAGCTTCGAAGCTGTTTGTACAGTTGG
ATGAAGTTTTATTGCAAGTATCTTTCCCTGTGTCGCAAGGTCTTGGCATT
GGTGTGCAACTGTCTGTGTTGTAATCTAATCTCTCGAAACCAAATTTACA
TGGACATTCATAATGTCGTCCTTTACGAGGAGTTGCCTCACACATCGTTG
AAGTTTTGTTGCAGGAATCAGCTTCAATATGACAGTAGTCTTGACAATCA
TCAACTGAGTTGTTGAATTTGAGATAACCATCACCACACGAGCAGTTGTA
GTAAACCGGAGCTGTCAAAGTGTTTGTGCAATTGGATCTTGTCTTATTAC
AAGTATCTTTCCCTGTGTCACAAGGCCTTGGCATCGGCGTACATTTGTCC
ATGTTGTTATCGAGTCTCTCAAAGCCAAGTTTACATGGGCATTCGTAGTG
TCGTCCTTTGCCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTGCAAG
TATCAGCCTCAATACGACAATACTCATGACATTGATCCAAGGAGTTGTTA
AACTTCAAATAACCATCTTCACAGGTACAATTGTAGTAGAAAGGAGCTTC
GAAGCTGTTTGTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTCCCTG
TGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTTATCTAAT
CTCTCGAAACCAAATTTACATGGACATTCATAATGTCGTCCTTTGCCAGG
AGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCAATAT
GACAGTAGTCTTGACAATCATCAACTGAGTTGTTGAATTTGAGATAACCA
TCACCACACGAGCAGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTGTGCA
ATTGGATCGTGTCTTGTTACAAGTATCTTTCCCTGTATCACAAGGTCTTG
GCATCGGTGTACATGAGTCCGTGTTGTTATCGAGTCTCTCAAATCCATGT
TTACAAGGACATTCGTAATGCCGCCCTTTACCAGGTGTCGCCAAACACGT
CGTTGATGTGTCGTTACATGTGTCGGAGTTATCAACGCAAAAGTCGAAAC
ATGTCGTATGATTTTGTTTGACATATCCGGCTGAACAGTTACAGTCAAAG
TAGTTTGGATGCGTGTAAGTATCGATACATGTTGATATATCTTTATCACA
AGTATCATTTCCCCAAGCACATGGAGTATCGGCTAGTGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041499-exon-sc0002895-1491911889:16461..18744 | TCONS_00041499-exon-sc0002895-1491911889:16461..18744 | Clytia hemisphaerica | exon |
| TCONS_00041499-exon-sc0002895-1510915933:16461..18744 | TCONS_00041499-exon-sc0002895-1510915933:16461..18744 | Clytia hemisphaerica | exon |
| TCONS_00041499-exon-sc0002895-1575043694:16461..18744 | TCONS_00041499-exon-sc0002895-1575043694:16461..18744 | Clytia hemisphaerica | exon |
| TCONS_00041499-exon-sc0002895-1491911889:21595..22401 | TCONS_00041499-exon-sc0002895-1491911889:21595..22401 | Clytia hemisphaerica | exon |
| TCONS_00041499-exon-sc0002895-1510915933:21595..22401 | TCONS_00041499-exon-sc0002895-1510915933:21595..22401 | Clytia hemisphaerica | exon |
| TCONS_00041499-exon-sc0002895-1575043694:21595..22401 | TCONS_00041499-exon-sc0002895-1575043694:21595..22401 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002895 | supercontig | sc0002895:16461..22401 + |
Blast
The following BLAST results are available for this feature:
|
