TCONS_00041075 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00041075
Unique Name	TCONS_00041075
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1092

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0002693:7267..10846+
coding sequence from alignment at sc0002693:7267..10846+

transcript sequence

>TCONS_00041075 ID=TCONS_00041075|Name=TCONS_00041075|organism=Clytia hemisphaerica|type=transcript|length=1092bp
aattaCCTGATACTAAAGCGTTGAATTTTTTGATGCAAACTACGCGTGTA
CGCTTGCTGTCTGAGCGAAAACGGCGGCCTTTGTCAAAAAAGTTACATCA
GCGGGttgaaacaaaatggctgcagtttgtttacatattttttaaaggga
caaatttttcaaaataatcaaaacaaaagctaAGCTGCTTTAAGAGAGAA
TTATCATGGGTGTCTTAAATTTTCCAGGTTCTTTAAGCTGTCAAGGTGGA
GCTGAATTCGATATAATATCCTTAGAGGCAGATATTGATCTACAACACGA
AATTAATGATCAAGCTCTTCAAAATATCAATTTGTCATTGCATTCAACTG
AAGAAAACAGCAGGAGTCCAAAAAGAAAGAAGTTGCGTTCTAATGGAGGA
AGAAAATCGTATGATTTTAGAGAATATGGTGTTGATGCTCGAAGAAGAGG
TGCAAAACATCAAAGACGAAAGCAAAATTTGGCTGATTTGATGGACATCG
GACGAGATGAAAAGATGGATGTTGATGAAAGTGAATGGTTTTCTGATGTG
CATCTCACACTTTTCACTGAGCTCTTTTTAGATGACAACAAAATGAAGGC
ATGGGACCGTTTTATGCAAATGAGTGAAGAAAAACAGAGGGACTATCTGG
AGCGCAAGACCGGTTCAAGAAAAATACCACAAGATGAAGTGAAGAAAGAG
GAGACGCCATCTGATGAACAAGGTCCAATCAAGCCTTTCAAAGAGGGAAG
CTTCCAATTGATTGATAAGAAGATTCAAGATATGTTGCGCACAAAGAAAC
TTGCAGCCTTGGTATATTTTAGTGTTCATGTCTGCTTTCAAACTATTTTG
CCCCTCTTTgccatacacccctgtgtcacagacccacttgaACCCAGCCA
CATTGGaaaatatggcaaaaatttcgtccccggtgggaaagtACCCTAGG
CTTTTAGCccaactgggaaattgactttgatttcatccccactcgaaact
ctatgttttaaaattgcatttggacctacctggaggtcctataaattacc
TTCGttaatcaggtaggtccattcagcttctactttaatggg

Run BLAST on NCBI

protein sequence of TCONS_00041075-protein

>TCONS_00041075-protein ID=TCONS_00041075-protein|Name=TCONS_00041075-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MGVLNFPGSLSCQGGAEFDIISLEADIDLQHEINDQALQNINLSLHSTEE
NSRSPKRKKLRSNGGRKSYDFREYGVDARRRGAKHQRRKQNLADLMDIGR
DEKMDVDESEWFSDVHLTLFTELFLDDNKMKAWDRFMQMSEEKQRDYLER
KTGSRKIPQDEVKKEETPSDEQGPIKPFKEGSFQLIDKKIQDMLRTKKLA
ALVYFSVHVCFQTILPLFAIHPCVTDPLEPSHIGKYGKNFVPGGKVP

Run BLAST on NCBI

transcript from alignment at sc0002693:7267..10846+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00041075 ID=TCONS_00041075|Name=TCONS_00041075|organism=Clytia hemisphaerica|type=transcript|length=3580bp|location=Sequence derived from alignment at sc0002693:7267..10846+ (Clytia hemisphaerica)
aattaCCTGATACTAAAGCGTTGAATTTTTTGATGCAAACTACGCGTGTA
CGCTTGCTGTCTGAGCGAAAACGGCGGCCTTTGTCAAAAAAGTTACATCA
GCGGGttgaaacaaaatggctgcagtttgtttacatattttttaaaggga
caaatttttcaaaataatcaaaacaaaagctaAGCTGCTTTAAGAGAGAA
TTATCATGGGTGTCTTAAATTTTCCAGGTTCTTTAAGCTGTCAAGGTGGA
GCTGAATNCTTTAAGAGAGAATTATCATGGGTGTCTTAAATTTTCCAGGT
TCTTTAAGCTGTCAAGGTGGAGCTGAATTCGATATAATGTAAGTTGATTG
CCCATTTTAATGTTTGAGGGttgaattcttcaaattttacaACCCTAGCT
AGCCAGTTTATAGCCACACTCTatctaggaaatctagctttcagaaaaaa
acaacatcagtcatctacaggatgtatttgcacaacaaggatgagagtta
cctgaatcaagttcgcaagacaattaattaNGCCAGTTTATAGCCACAct
ctaggaaatctagctttcagaaaaaaacaacatcagtcatctacatgatg
tatttgcacaacaaggatgagagtgacctgaatcaagttcgcaagacaat
taattaaaacttgaaagtttgaaacaaaataaaacgtgcagcagccaaaa
tcaaccaaccaaaatttgtcattcaattcccaagaaGATAgcacttcgat
ttttaaggccttgtttatacgctaaagtaaaaataataccgcacatgtaa
atgggtcattgtttcatgaaaaataacccagcgctttttaatgaaattaa
cattttcaaaaactatgagaaattgcctaaaatttgagccatatatgaaa
aaatttgtattacaaaagaaaaaaagaaaaaaagtgtattacaccaaagt
cccaacttctctagatcaaaatttattggcctatttgtggtaaaaaactg
atggaaaacagggaatttccccacaatctGCATTAATTTATGCAAAATTt
aaaacacctttttgaccacaaataggcccataacttttgatctagagaag
ttgggactttggttttatacacttttttgctcagtttgaagagctctatc
atgtgatataaggtcattttttaatttgaagaccctccaaaaataatgaa
tttccaggccttgcaattttgcctgggaacgcaaaaaatcgccatttact
cgttacttgcacgataatatcgtggaaactttttgaNAAGGTGAGAAAAC
CATGACCAGACAAGTCTGTGAATTGGggtatatgcatgttagcctccact
gatgcaagttaccctttttcacggtagcacttcgatttttaaggccttgt
ttatacgctaaagtaaaaataataccgcacatgtaaatgggtcattgttt
catgaaaaaataacccagcctttttaatgaaattaacattttcaaaaact
atgagaaattgcctaaaatttgagccatagatgaaaaaatttgtattaca
aaagaaaaaaagaaaaaaagtgtattacaccaaagtcccaacttctctag
atcaaaatttattggcctatttgtggtaaaaaactgatggaaaacaggga
atttccccacaatctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNacaatctgcattaatttatgcaaaattaaacacctttttgacc
acaaataggcccataacttttgatctagagaagttgggactttggtttta
tacacttttttgctcagtttgaagagctctatcatgtgatataaggtctt
tttttaatttgaagaccctccaaaaatatactaattcgagagtttccatc
gaaaaaagtggaatctaagaggtgtatcacgaaaatcattttctagccac
tttttttcgacctcagcagcGCGACTAAAACAAACACTGAATGCTCATTG
AAGAATTAGTTTTATAATTTGTAATGTCAATATTGACAACCGCTGACAAA
GTTTCAAAGCctttaaaaaaaacacttttggtGGAATGTATTCAAAATGA
AGCTACACTGAATTGATTAGTTGGTCCAAGGGGGTTTGTAAGAaggttaa
ttttcaaaatatcaattaGCATCAGGGACACATATTATAGGCACTTGAGA
GTACGTTTTCTGTTTATTTTCAGATCCTTAGAGGCAGATATTGATCTACA
ACACGAAATTAATGATCAAGCTCTTCAAAATATCAATTTGTCATTGCATT
CAACTGAAGAAAACAGCAGGAGTCCAAAAAGAAAGAAGTTGCGTTCTAAT
GGAGGAAGAAAATCGTATGATTTTAGAGAATATGGTGTTGATGCTCGAAG
AAGAGGTGCAAAACATCAAAGACGAAAGCAAAATTGTATGAGTATATttg
cttttaattttttagacAACATTATTTTGCTGCAACATCCAAGAGAACTA
ATTAGAGTTCAAAACTGACAAAGCTACACCTAAATTTAGTCAATTAATTT
CTCACATTTTTCTTAGCTGGCAGTTAATTAATGTTGGAGCCATAGGACGT
CTAACTGATGTAACTGTAACTGTTGTCTTTTAGTGGCTGATTTGATGGAC
ATCGGACGAGATGAAAAGATGGATGTTGATGAAAGTGAATGGTTTTCTGA
TGTGCATCTCACACTTTTCACTGAGCTCTTTTTAGATGACAACAAAATGA
AGGTATATATCTGCGTAGTGAAAAATATCTCTTAAATTACAAAATTTACC
TTTACGACATGACCCAAGgtgtaaaaaagtaaaaaacttcaaCTTTTTTC
TTGTCAAACAGGCCTTCTAAATTCACGTTTCTGCAAATTAAACTCTGCAA
TATTACTCTTAcaacttttgatgaaaaaaaaaatgtaacaaaGAAATGTg
acaagaaaactttttttgctcGATTATATTCTAAAGGCATGGGACCGTTT
TATGCAAATGAGTGAAGAAAAACAGAGGGACTATCTGGAGCGCAAGACCG
GTTCAAGAAAAATACCACAAGATGAAGTGAAGAAAGAGGAGACGCCATCT
GATGAACAAGGTCCAATCAAGCCTTTCAAAGAGGGAAGCTTCCAATTGAT
TGATAAGAAGATTCAAGATATGTTGCGCACAAAGAAACTTGCAGCCTTGG
TATATTTTAGTGTTCATGTCTGCTTTCAAACTATTTTGCCCCTCTTTgcc
atacacccctgtgtcacagacccacttgaACCCAGCCACATTGGaaaata
tggcaaaaatttcgtccccggtgggaaagtACCCTAGGCTTTTAGCccaa
ctgggaaattgactttgatttcatccccactcgaaactctatgttttaaa
attgcatttggacctacctggaggtcctataaattaccTTCGttaatcag
gtaggtccattcagcttctactttaatggg

Coding sequence (CDS) from alignment at sc0002693:7267..10846+

>TCONS_00041075 ID=TCONS_00041075|Name=TCONS_00041075|organism=Clytia hemisphaerica|type=CDS|length=3720bp|location=Sequence derived from alignment at sc0002693:7267..10846+ (Clytia hemisphaerica)
ATGGGTGTCTTAAATTTTCCAGGTTCTTTAAGCTGTCAAGGTGGAGCTGA
ATTCGATATAATATCCTTAGAGGCAGATATTGATCTACAACACGAAATTA
ATGATCAAGCTCTTCAAAATATCAATTTGTCATTGCATTCAACTGAAGAA
AACAGCAGGAGTCCAAAAAGAAAGAAGTTGCGTTCTAATGGAGGAAGAAA
ATCGTATGATTTTAGAGAATATGGTGTTGATGCTCGAAGAAGAGGTGCAA
AACATCAAAGACGAAAGCAAAATTTGGCTGATTTGATGGACATCGGACGA
GATGAAAAGATGGATGTTGATGAAAGTGAATGGTTTTCTGATGTGCATCT
CACACTTTTCACTGAGCTCTTTTTAGATGACAACAAAATGAAGGCATGGG
ACCGTTTTATGCAAATGAGTGAAGAAAAACAGAGGGACTATCTGGAGCGC
AAGACCGGTTCAAGAAAAATACCACAAGATGAAGTGAAGAAAGAGGAGAC
GCCATCTGATGAACAAGGTCCAATCAAGCCTTTCAAAGAGGGAAGCTTCC
AATTGATTGATAAGAAGATTCAAGATATGTTGCGCACAAAGAAACTTGCA
GCCTTGGTATATTTTAGTGTTCATGTCTGCTTTCAAACTATTTTGCCCCT
CTTTgccatacacccctgtgtcacagacccacttgaACCCAGCCACATTG
GaaaatatggcaaaaatttcgtccccggtgggaaagtACCCTAGATGGGT
GTCTTAAATTTTCCAGGTTCTTTAAGCTGTCAAGGTGGAGCTGAATTCGA
TATAATATCCTTAGAGGCAGATATTGATCTACAACACGAAATTAATGATC
AAGCTCTTCAAAATATCAATTTGTCATTGCATTCAACTGAAGAAAACAGC
AGGAGTCCAAAAAGAAAGAAGTTGCGTTCTAATGGAGGAAGAAAATCGTA
TGATTTTAGAGAATATGGTGTTGATGCTCGAAGAAGAGGTGCAAAACATC
AAAGACGAAAGCAAAATTTGGCTGATTTGATGGACATCGGACGAGATGAA
AAGATGGATGTTGATGAAAGTGAATGGTTTTCTGATGTGCATCTCACACT
TTTCACTGAGCTCTTTTTAGATGACAACAAAATGAAGGCATGGGACCGTT
TTATGCAAATGAGTGAAGAAAAACAGAGGGACTATCTGGAGCGCAAGACC
GGTTCAAGAAAAATACCACAAGATGAAGTGAAGAAAGAGGAGACGCCATC
TGATGAACAAGGTCCAATCAAGCCTTTCAAAGAGGGAAGCTTCCAATTGA
TTGATAAGAAGATTCAAGATATGTTGCGCACAAAGAAACTTGCAGCCTTG
GTATATTTTAGTGTTCATGTCTGCTTTCAAACTATTTTGCCCCTCTTTgc
catacacccctgtgtcacagacccacttgaACCCAGCCACATTGGaaaat
atggcaaaaatttcgtccccggtgggaaagtACCCTAGATGGGTGTCTTA
AATTTTCCAGGTTCTTTAAGCTGTCAAGGTGGAGCTGAATTCGATATAAT
ATCCTTAGAGGCAGATATTGATCTACAACACGAAATTAATGATCAAGCTC
TTCAAAATATCAATTTGTCATTGCATTCAACTGAAGAAAACAGCAGGAGT
CCAAAAAGAAAGAAGTTGCGTTCTAATGGAGGAAGAAAATCGTATGATTT
TAGAGAATATGGTGTTGATGCTCGAAGAAGAGGTGCAAAACATCAAAGAC
GAAAGCAAAATTTGGCTGATTTGATGGACATCGGACGAGATGAAAAGATG
GATGTTGATGAAAGTGAATGGTTTTCTGATGTGCATCTCACACTTTTCAC
TGAGCTCTTTTTAGATGACAACAAAATGAAGGCATGGGACCGTTTTATGC
AAATGAGTGAAGAAAAACAGAGGGACTATCTGGAGCGCAAGACCGGTTCA
AGAAAAATACCACAAGATGAAGTGAAGAAAGAGGAGACGCCATCTGATGA
ACAAGGTCCAATCAAGCCTTTCAAAGAGGGAAGCTTCCAATTGATTGATA
AGAAGATTCAAGATATGTTGCGCACAAAGAAACTTGCAGCCTTGGTATAT
TTTAGTGTTCATGTCTGCTTTCAAACTATTTTGCCCCTCTTTgccataca
cccctgtgtcacagacccacttgaACCCAGCCACATTGGaaaatatggca
aaaatttcgtccccggtgggaaagtACCCTAGATGGGTGTCTTAAATTTT
CCAGGTTCTTTAAGCTGTCAAGGTGGAGCTGAATTCGATATAATATCCTT
AGAGGCAGATATTGATCTACAACACGAAATTAATGATCAAGCTCTTCAAA
ATATCAATTTGTCATTGCATTCAACTGAAGAAAACAGCAGGAGTCCAAAA
AGAAAGAAGTTGCGTTCTAATGGAGGAAGAAAATCGTATGATTTTAGAGA
ATATGGTGTTGATGCTCGAAGAAGAGGTGCAAAACATCAAAGACGAAAGC
AAAATTTGGCTGATTTGATGGACATCGGACGAGATGAAAAGATGGATGTT
GATGAAAGTGAATGGTTTTCTGATGTGCATCTCACACTTTTCACTGAGCT
CTTTTTAGATGACAACAAAATGAAGGCATGGGACCGTTTTATGCAAATGA
GTGAAGAAAAACAGAGGGACTATCTGGAGCGCAAGACCGGTTCAAGAAAA
ATACCACAAGATGAAGTGAAGAAAGAGGAGACGCCATCTGATGAACAAGG
TCCAATCAAGCCTTTCAAAGAGGGAAGCTTCCAATTGATTGATAAGAAGA
TTCAAGATATGTTGCGCACAAAGAAACTTGCAGCCTTGGTATATTTTAGT
GTTCATGTCTGCTTTCAAACTATTTTGCCCCTCTTTgccatacacccctg
tgtcacagacccacttgaACCCAGCCACATTGGaaaatatggcaaaaatt
tcgtccccggtgggaaagtACCCTAGATGGGTGTCTTAAATTTTCCAGGT
TCTTTAAGCTGTCAAGGTGGAGCTGAATTCGATATAATATCCTTAGAGGC
AGATATTGATCTACAACACGAAATTAATGATCAAGCTCTTCAAAATATCA
ATTTGTCATTGCATTCAACTGAAGAAAACAGCAGGAGTCCAAAAAGAAAG
AAGTTGCGTTCTAATGGAGGAAGAAAATCGTATGATTTTAGAGAATATGG
TGTTGATGCTCGAAGAAGAGGTGCAAAACATCAAAGACGAAAGCAAAATT
TGGCTGATTTGATGGACATCGGACGAGATGAAAAGATGGATGTTGATGAA
AGTGAATGGTTTTCTGATGTGCATCTCACACTTTTCACTGAGCTCTTTTT
AGATGACAACAAAATGAAGGCATGGGACCGTTTTATGCAAATGAGTGAAG
AAAAACAGAGGGACTATCTGGAGCGCAAGACCGGTTCAAGAAAAATACCA
CAAGATGAAGTGAAGAAAGAGGAGACGCCATCTGATGAACAAGGTCCAAT
CAAGCCTTTCAAAGAGGGAAGCTTCCAATTGATTGATAAGAAGATTCAAG
ATATGTTGCGCACAAAGAAACTTGCAGCCTTGGTATATTTTAGTGTTCAT
GTCTGCTTTCAAACTATTTTGCCCCTCTTTgccatacacccctgtgtcac
agacccacttgaACCCAGCCACATTGGaaaatatggcaaaaatttcgtcc
ccggtgggaaagtACCCTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_025093	XLOC_025093	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00041075-protein	TCONS_00041075-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002693	supercontig	sc0002693:7267..10846 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.3883	15.8556	3.41421	1.6367	21.4425	18.7757	35.921	39.6818	29.6613	29.7476	19.5017	23.2083	20.364	22.3464	22.4477	27.9853	31.0558	30.7957	22.1617	26.3091	26.984	24.6721	39.8562	34.7322	34.3074	32.5321	35.4509	25.2576	39.8948	45.8341

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR025952	R3H-assoc_dom

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00041075 vs. Swiss-Prot (Human)

BLAST of TCONS_00041075 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00041075 (transcript) - C. hemisphaerica