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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040104 ID=TCONS_00040104|Name=TCONS_00040104|organism=Clytia hemisphaerica|type=transcript|length=1881bp
CTAAAAAAGATTTGACGTTCGAATCGAGGAAGCTCCTACAGTGactttca
agcaaaaataattctgacgtcaattattcACAATATCAAGTGATGTCGTT
GCCTTTACCAGACGACCACGGATTTTTCCTCGACACTGTTcagagtgata
aaaaaatcgcgcgttgggatagagataggctaGTGACGCCGTTGcaaatt
ttcgaatttaaaaAGGCGTGGCATTTTCTACGAGTTACTAAAAATGTGTT
TTGAAAGTCTATGCACAAGTAAAATCGGTGTTCTTTTAGGCGAGAAAATG
ATAGAAGTTGTTGTCCCATAAGCTGCGATATACCTATGATCGTTTTAAAA
TTAAAGTATTTATTTAAAACTCATATCATAATCCATAACTTAACTTTGCg
taatattgttttttttttacagacaTGTATTCTTGGGTCGGGGATGACAT
TGCAATAGAAAAACCCGATGGAAAAACGTACATAATTTGTCTTGgaataa
aacaagaaaaagACAAACTGACAGCCAAAGAAAATGGAGATATTCAAGTC
AATTTGGAAGACGGTTCAGAAGAAGAAGGCATCTATGTTATCGCTTTGCC
GTCAAACGAATCCACAGGTTTCCAAGTGCATGATGGAGAAGGAAATTATG
ATATCATTGAAGAATCAACGCAAgGTTTTCAATCAAATGAAGAAGAGGAA
GAggaagaggaagaagaagaagaatacGAAAATGTTTGCATTGAAATTGG
TCCTTCAGAGCAAGGTGAACCTAATTCAGACACAGTATACGAAAACTAAT
AAAACAATCTCGTAAGAATATCGACCAGTCTCGTACCGAGAGCCACTTAC
ACCgctttttgatttaatttatgAATGTGATATCACCATTTGCTCTCACA
ATCGTAAAAAGCGAACAAAGAGACTGGATACTAGCTTTTATTTCAGCTTG
AAAATAGTTTGGTGTAAATGGGTCCACCTGATAAAGTTGAATTGGGTCTG
AAATGAACGTGTAGATCAGACTTAGACGCTCGCTTGAAGAAGATTGAGTT
CTGGGTTTAATCCATGGGATGTGAGGGTTTTCTGATTTTGATCTAGAAGT
TTTCTCTTTGTAATACAGTAGATTCTCTTTAGTTCGAACCTTTAAAACTA
TAAAGTCTCCTTAACTCGAGCAAGTTTTATGGTCACTTCAGTTAACAATG
CCTTATTACCTATAAACCTTACTTTATAATTCAAAATTTCCTATGAACGT
TGCAACGCTGTCCCATAGCCCCGATGGAACTTTTTCCCACAGTGGGGATG
CAAATTTCTCTTTAATTCGAACTTCTATAACTAAAATGTCTATTTAACTG
GAGCAGGTTTGATGGTTCCTTTAGTTAACAATGCCTTATAAACCTGTAAA
CCTTTCTTCATAACTCGAAATTTCCTTAACTCGAACAAGTTTGTGTTCCC
AACGATGCGTTTTTGAGTTATCGACGTTACAACGCTGTCTCATAGCCCCA
ATGAGACTTTTTCCCATAGTGGGGATGTAAAATTCTATCGAAAACCCAGT
AAGGATAAAAAAATGTTGTATAGCGAATCTGCAGCGGAAAAATATGCTGA
CAGTGCCAACACTGCCGGGCCTTTACACCACTTAGGCTTTCTTGTTCGAG
TTAAGGAGAAATTAGAGTTATAGAGGTTCGAGTTAAAGAGACTCCACTGT
ATGAAACTTTCAGCTCACAAAATTTTATAGAATTTTAAGGCATTTCTTGT
TTGAAAttagtttatttttaaaattcacaGCTTGAAGTTGGAGAGCAGAG
TTGCAAACTCAATGGAACTAATATGGACAGTTTCTTTTATAATATGTAAA
TAACATTATATCACAACTCTCCTactttttt Run BLAST on NCBI transcript from alignment at sc0002308:22117..26576+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040104 ID=TCONS_00040104|Name=TCONS_00040104|organism=Clytia hemisphaerica|type=transcript|length=4460bp|location=Sequence derived from alignment at sc0002308:22117..26576+ (Clytia hemisphaerica)
CTAAAAAAGATTTGACGTTCGAATCGAGGAAGCTCCTACAGTGactttca
agcaaaaataattctgacgtcaattattcACAATATCAAGTGATGTCGTT
GCCTTTACCAGACGACCACGGATTTTTCCTCGACACTGTTcagagtgata
aaaaaatcgcgcgttgggatagagataggctaGTGACGCCGTTGcaaatt
ttcgaatttaaaaAGGCGTGGCATTTTCTACGAGTTACTAAAAATGTGTT
TTGAAAGTCTATGCACAAGTAAAATCGGTGTTCTTTTAGGCGAGAAAATG
ATAGAAGTTGTTGTCCCATAAGCTGCGATATACCTATGATCGTTTTAAAA
TTAAAGTATTTATTTAAAACTCATATCATAATCCATAACTTAACTTTGCg
taatattgttttttttttacagacaTGTATTCTTGGGTCGGGGATGACAT
TGCAATAGAAAAACCCGATGGAAAAACGTACATAATTTGTCTTGgaataa
aacaagaaaaaggtgctagaaaatcattttgaatATCATAGATTCctctg
taattatcagacataTCACTCTTGTTCCACGATTTTATTGGTCCTATTTT
TACACGCTTATCatgactctctaattcgaacctctctCATTCGAAATTTG
ATACAAGGAGGGCGTCTTACATTTTTCACAAGAGCACTCCTACACTTGCG
TTTTTGATACCGTCGTCGAGCAGAATATTCTTGTATTTCCTTTACCAGTC
TCCTCAAATACTAACCGGGCCACTGAGATTCGGCATGTATATAAAAATTA
ACATATTATTCCCCTCATTTGGAAAGTGGCATAAAATGACGAGGGTAAAT
TGTATAAAAAAATCTCGATTGAGTTTTTGCACAACTTTCACTGTATTCTG
GTTTCAGACAAACTGACAGCCAAAGAAAATGGAGATATTCAAGTCAATTT
GGAAGACGGTTCAGAAGAAGAAGGCATCTATGTTATCGCTTTGCCGTCAA
ACGAATCCACAGGTATGTGAGATAAGACCATGTTCAAACGTcacggttcc
gttccgttccgttccgaaacggttTCGAAACAAGCGTGAACGTCAAGATT
CGAAACGTcgaaaaagaagacgttacaaagcaaaaaagatcaaaacggtt
tcgcttcacttttttcatcggaacggaacttctccgttttcttgctccga
aacgttccaaTACCAATATGAACagactcgatccgtaacgaaaatcacac
cggagcgaaacggaacagtaacgtgtgaacatagtctaatcatttttcaa
tagaattactcTCAGGGAGGGACATCCAGGCAAAATGACCGACGGGTATA
TGTACACCCTAAAGTGTGTGTTTTAAATACTGAAATACTGTTCTTCTTTA
GCTTTTTTTATCTTTCCTAGAAGGTACTCGACCGATTTTTCTGTATTTTC
TTCTTGCTAAAATCCTATGTAATAAACCACCAATGGAAGCTTCGAGTAAT
GACATTATAAATCCACGCCCAGTCTCCAACCAAAGAGTTCTTATTTTTCA
GGTTTCCAAGTGCATGATGGAGAAGGAAATTATGATATCATTGAAGAATC
AACGCAAggtaaagtcaaaaataaacaatctatataccttttcgaccgta
gccgccaattgccgcgcgggcatttctTTGTCCgttttatcccactaaac
tcgatccaaaccttttttgacacatttttctattgtcaatAGATGCAAAA
AatggactgggacggttttagtggaataaagcggacaaaaaaatacccgC
GCGTCAATTGGccactacggtcgaaaaggtataTCATAAATCATGTTCTT
AGGCTTTATTTTGggttcaatagaccttttcataaattacgtcatgaaca
tcacttgcctcttattcaaacaattaccatgggcgcgttcacactggaaa
gtttacctaattaaatctatcaaagttaaacaaagagatttatgatggat
gaatacactggtttattacagttctttgtagNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNgggtgtccctaattaaagtatc
gagtcgaaacacaactatgagtagaaagttttatgtgcgtgttcacaaaa
ttgtattttaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttgtaataa
gcctgtgtgatggagaacgttcttatattttagcgataacacacacaaac
ttttctactcaatcgcatgttcaaactcgatactttaattaaaACGGAAG
GCaattttgttcgagttaaagccATTTTCGAGCCCTGGATACTAgtttat
aagacattgttaaAGTGAAGAAACCATCTAACTTGTTtgaattaaggaga
cattcgagttatagagggtCGTGTTATAAACATTCCACTGTATAAAAGTT
TATGTGCAAGCGAAACCAATCCTTATATTATCATggtgtcctgaaaaaaa
gtagAAGGTCGAAACATATCGCTAGGTACTGTCGCTTTGTACTACTGTTT
ATTAACCCGAAAAAGCATCGTATTATGCAgaggtagagcatccggctaca
gtGTGTGTAAGTCAGGGGTTTAATCCCCGACTGGGTACACTGGGTATCAC
AAAAATCTTCNGGTGTGTGTAAGTCAGGGGTTTAATCCCCGACTGGGTAC
ACTGGGTATCACGAAAATCTTCGCTCTTAGTGAAAAATGGGTCAGGGGGG
GAGTAAAGAAAGGGCGAGGTCGGCATTGAAACATGCTTTGCAAAGCAATC
TGTTTTGATTTCTTCATCTTTCCGGACTCTCttccatttttttttgtcaa
aataattgGATTTTTTTACGTTATGATATGATTTCAATTATTTGCAATTT
TAGGTTTTCAATCAAATGAAGAAGAGGAAGAggaagaggaagaagaagaa
gaatacGAAAATGTTTGCATTGAAATTGGTCCTTCAGAGCAAGGTGAACC
TAATTCAGACACAGTATACGAAAACTAATAAAACAATCTCGTAAGAATAT
CGACCAGTCTCGTACCGAGAGCCACTTACACCgctttttgatttaattta
tgAATGTGATATCACCATTTGCTCTCACAATCGTAAAAAGCGAACAAAGA
GACTGGATACTAGCTTTTATTTCAGCTTGAAAATAGTTTGGTGTAAATGG
GTCCACCTGATAAAGTTGAATTGGGTCTGAAATGAACGTGTAGATCAGAC
TTAGACGCTCGCTTGAAGAAGATTGAGTTCTGGGTTTAATCCATGGGATG
TGAGGGTTTTCTGATTTTGATCTAGAAGTTTTCTCTTTGTAATACAGTAG
ATTCTCTTTAGTTCGAACCTTTAAAACTATAAAGTCTCCTTAACTCGAGC
AAGTTTTATGGTCACTTCAGTTAACAATGCCTTATTACCTATAAACCTTA
CTTTATAATTCAAAATTTCCTATGAACGTTGCAACGCTGTCCCATAGCCC
CGATGGAACTTTTTCCCACAGTGGGGATGCAAATTTCTCTTTAATTCGAA
CTTCTATAACTAAAATGTCTATTTAACTGGAGCAGGTTTGATGGTTCCTT
TAGTTAACAATGCCTTATAAACCTGTAAACCTTTCTTCATAACTCGAAAT
TTCCTTAACTCGAACAAGTTTGTGTTCCCAACGATGCGTTTTTGAGTTAT
CGACGTTACAACGCTGTCTCATAGCCCCAATGAGACTTTTTCCCATAGTG
GGGATGTAAAATTCTATCGAAAACCCAGTAAGGATAAAAAAATGTTGTAT
AGCGAATCTGCAGCGGAAAAATATGCTGACAGTGCCAACACTGCCGGGCC
TTTACACCACTTAGGCTTTCTTGTTCGAGTTAAGGAGAAATTAGAGTTAT
AGAGGTTCGAGTTAAAGAGACTCCACTGTATGAAACTTTCAGCTCACAAA
ATTTTATAGAATTTTAAGGCATTTCTTGTTTGAAAttagtttatttttaa
aattcacaGCTTGAAGTTGGAGAGCAGAGTTGCAAACTCAATGGAACTAA
TATGGACAGTTTCTTTTATAATATGTAAATAACATTATATCACAACTCTC
CTactttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040104-exon-sc0002308-1491911889:22117..22628 | TCONS_00040104-exon-sc0002308-1491911889:22117..22628 | Clytia hemisphaerica | exon |
| TCONS_00040104-exon-sc0002308-1510915933:22117..22628 | TCONS_00040104-exon-sc0002308-1510915933:22117..22628 | Clytia hemisphaerica | exon |
| TCONS_00040104-exon-sc0002308-1575043694:22117..22628 | TCONS_00040104-exon-sc0002308-1575043694:22117..22628 | Clytia hemisphaerica | exon |
| TCONS_00040104-exon-sc0002308-1491911889:23024..23128 | TCONS_00040104-exon-sc0002308-1491911889:23024..23128 | Clytia hemisphaerica | exon |
| TCONS_00040104-exon-sc0002308-1510915933:23024..23128 | TCONS_00040104-exon-sc0002308-1510915933:23024..23128 | Clytia hemisphaerica | exon |
| TCONS_00040104-exon-sc0002308-1575043694:23024..23128 | TCONS_00040104-exon-sc0002308-1575043694:23024..23128 | Clytia hemisphaerica | exon |
| TCONS_00040104-exon-sc0002308-1491911889:23668..23724 | TCONS_00040104-exon-sc0002308-1491911889:23668..23724 | Clytia hemisphaerica | exon |
| TCONS_00040104-exon-sc0002308-1510915933:23668..23724 | TCONS_00040104-exon-sc0002308-1510915933:23668..23724 | Clytia hemisphaerica | exon |
| TCONS_00040104-exon-sc0002308-1575043694:23668..23724 | TCONS_00040104-exon-sc0002308-1575043694:23668..23724 | Clytia hemisphaerica | exon |
| TCONS_00040104-exon-sc0002308-1491911889:25370..26576 | TCONS_00040104-exon-sc0002308-1491911889:25370..26576 | Clytia hemisphaerica | exon |
| TCONS_00040104-exon-sc0002308-1510915933:25370..26576 | TCONS_00040104-exon-sc0002308-1510915933:25370..26576 | Clytia hemisphaerica | exon |
| TCONS_00040104-exon-sc0002308-1575043694:25370..26576 | TCONS_00040104-exon-sc0002308-1575043694:25370..26576 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002308 | supercontig | sc0002308:22117..26576 + |
Blast
The following BLAST results are available for this feature:
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