TCONS_00038980 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038980
Unique NameTCONS_00038980
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3202

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038980 ID=TCONS_00038980|Name=TCONS_00038980|organism=Clytia hemisphaerica|type=transcript|length=3202bp
catgtttttgatgatatcactcaaaaacaggggtggtacctggaaatctt
ttcagaaaacagttactaccaaggtcctgaaaaaaagtgttgaaaatgca
cttactacacatcatgtcttgtagtaactgtgTGCCCCCCCTGATACAGA
CTTTCTTATTGGACCTACATGGAGTTCGTTCGTCTGTTTAGTTACCAGCC
TTTCTGGGGATCGGCTCATTTGTTTATTTTAACAATTTCTTTGCACAAAT
GTCATGCCAAAAATACGCCAGAGCCCGATATCCAAAACATCGGAcattgg
gcaaatttgggccaagaatcaactaaaatttgggGTTTTTGACAGAAAAA
TAGATAGCAAGGTACTATGTAAGGCCGCTGAAGTGATTTTTCCCCAGAGA
ACTTTTGTTCgggttttcgttttttttggGGGAAACTCCCTTTTGTTTTC
GATCGTTGATTTTCCTCATCACGCTACAATAACAATTAACACATGTATCA
GATAACCTTTCCTGGTCATATGTACTGTATGATTCGAAAGTGCTatgaag
aattttttattttaatccaGTCATCTGATTTATTGGTATTGTGAGGACAA
GAAACTATTAGAGAGTTTAGTTCAATGtttatttaaccctttaagtgcca
atgtcgtatatatcagacatgggctatgtaggagggcgaagccctcctgt
aatgcccagtttgagttagaaatcgtcatttttggtctaactggTAGGAA
Taagattgggcttcatggtcaagcaaaaaaaacaatcaaaagtgagtctt
tccagcgagattttaagccaaaaagtaaaaaaaaaatcaaatatttgaca
aaaatccacttttttcagattttgaccgttttttgaccatttttggtcaa
cgagtgatccaagaagcttcaaatttggccctgctttacttgattctgtc
ctccagcgaattactttgaagttttaccactgggtacctttctatcattc
aggcaggttcGCGCAGAAATAGGAGAATGTAAGCATCTCATGTAACCATG
GCTAAAAACataggagactctaagctatccaacgagctataggaacaagc
ttctaactccttccaGATCCCGAGATATaaacctttaaagtttgaactag
ctaTAACTCTTCTTGGCTTTTATTTCAGGCGATTCAGTGGCGTTCCCTAT
GAAAGAAGAATTCgccaaactttgttttgaaacacTTTTGGAATTTTCAT
TCTTCAAAGAAACTGATGACAAAGaaGAGACACAACTTTCGCGACTGGCA
TTGAGTTCATTGATGCAAAGATGTCGCGATGTTCTTTTGAAATATGCCGA
AGATGAACGATTGAACGGAGAATTTCCACTACCTAGGGCACGGATGTTCG
AAATCTCGTTTGCTATCAAAGCCATATCCACTTTGCTTTCGTCCCTCAAA
AAGACAGTGGAGACACGACCAAATATACTGGATGCGACACAGTGGAGTGA
GGTGATTGGTTTATATCCAGTGATCTTAGAATGTGTCACGTGTACATCAC
ATGACGTTCGAATCGCTCTCAAAGAAGCACTGTTGGAATTCCAAGACTTG
CTGGCACCTCCTCACCCAAAAATGTGACGATATTTGAAAGCTTTCCTTAC
GCCTTTTGAATGGTCATTGCAGATAACAAATTGGAGTAAAAAATCTCACC
AGGTTTAGCAGTAGACTGGAGCGAAGTGAAACCAAAGTATTTGTTAGCGA
TAAACATGCATCCGTTTGGAACTTAAAGGATAAATGCATTATTGACAAAA
CGTAAATCTAcgaatttttcagaaaagttcTATCCAATCCACAATTTATG
GTGGAGCTTCCAAGGTAGTGAAAATCGCAGGTAGAATGGGTTCATGTCTT
GCGGCTTCTACTCCAGGTGATTATTATCTAATATTAGCCGCATACCGGGT
ATaaactgttttttataagaattgcaTAAATCGAGGTGAGCCTCGTCATC
GGtgaacatttttaattttgagcCTTGAAATATTCTAATAGGTATCGTAT
AATATTTCTACGGAGACAATTTTTTCGTTTCTCtcagttttttttggaat
tgcaCAGATTTCCTTTGTTTATTGGTAATAAATAgaaattttagttttgt
ttttaaaaatacgGAACCACCGTGAAATGTTTAGACCTTTTGGACAacaa
aaaccattttttgccCTCTTTTCCTGATATTCTTGGCAAATTTTTAGTAT
TCGAAGTCCTCTTGAGAGAATTGGCGCTCGATTCCCTCAGTGTATTAATT
TTGGGATGtacttaatttggcgattggccgaAATATATTATTGGCAGGGG
AGAAATTTTAAAGCTTGTATGATGGATTAGGTGTCTAAAAATAAACCCCT
TCCTACTgtaaaaattggcaaaaatatcgtccccggtggaaaatgatcct
ccaatttttgttcccactgaaaataatcaaataaagcaatcctcactgca
aaatattatactatttttcccatccccactgaattttctgacttgaaaat
gagtaaattcAAATCCCCAGGCATAAACAATGTAGTAATATCAATcctca
tcgagtttcagtcccaCTGTTTGAATGAATCCCACCGGAtcagtgagaag
ggggtgttaaaattaatacacttaagGTATCTCACTTAATAATTAgcata
attaatttttgattaattttattgATTATTTCATGTTAAACATTTATAGC
TTGattattttagtttagttttcttTTGATCTTAAATCGCAATTTCATGA
AATCCTCATTCGAAACATCATTTACATTCCCCATATTTTGAATTGTGAAA
TCGCACAATTTATTGCGATAAATGGATTTTAGGGGCATGGCATTTAGAAT
TAAtatttaaacaatttttataaaacttaactttattattttccaatgaa
attattcaattttttttccttctatttTTTGACAATATAGTAATGAACGA
AATACGTCGAAAATATGAATGGTTTTTTTTGGAGAGAGTCtagaccatag
atttataaagcccgaagggctagatgttgtGCTTCGGCTGAAATATGTGT
CGTGGTTAGGTAGAAAAtgctacctaggtcacgtgacgctacaatagaat
ttcagcgcttgaccaatcagaagcttcgcgggttttcgaaaacaatagca
ac
Run BLAST on NCBI

protein sequence of TCONS_00038980-protein

>TCONS_00038980-protein ID=TCONS_00038980-protein|Name=TCONS_00038980-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MKEEFAKLCFETLLEFSFFKETDDKEETQLSRLALSSLMQRCRDVLLKYA
EDERLNGEFPLPRARMFEISFAIKAISTLLSSLKKTVETRPNILDATQWS
EVIGLYPVILECVTCTSHDVRIALKEALLEFQDLLAPPHPKM
Run BLAST on NCBI

transcript from alignment at sc0001981:17310..28337+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038980 ID=TCONS_00038980|Name=TCONS_00038980|organism=Clytia hemisphaerica|type=transcript|length=11028bp|location=Sequence derived from alignment at sc0001981:17310..28337+ (Clytia hemisphaerica)
catgtttttgatgatatcactcaaaaacaggggtggtacctggaaatctt
ttcagaaaacagttactaccaaggtcctgaaaaaaagtgttgaaaatgca
cttactacacatcatgtcttgtagtaactgtgTGCCCCCCCTGATACAGA
CTTTCTTATTGGACCTACATGGAGTTCGTTCGTCTGTTTAGTTACCAGCC
TTTCTGGGGATCGGCTCATTTGTTTATTTTAACAATTTCTTTGCACAAAT
GTCATGCCAAAAATACGCCAGAGCCCGATATCCAAAACATCGGAcattgg
gcaaatttgggccaagaatcaactaaaatttgggGTTTTTGACAGAAAAA
TAGATAGCAAGGTACTATGTAAGGCCGCTGAAGTGATTTTTCCCCAGAGA
ACTTTTGTTCgggttttcgttttttttggGGGAAACTCCCTTTTGTTTTC
GATCGTTGATTTTCCTCATCACGCTACAATAACAATTAACACATGTATCA
GATAACCTTTCCTGGTCATATGTACTGTATGATTCGAAAGTGCTatgaag
aattttttattttaatccaGTCATCTGATTTATTGGTATTGTGAGGACAA
GAAACTATTAGAGAGTTTAGTTCAATGtttatttaaccctttaagtgcca
atgtcgtatatatcagacatgggctatgtaggagggcgaagccctcctgt
aatgcccagtttgagttagaaatcgtcatttttggtctaactggTAGGAA
Taagattgggcttcatggtcaagcaaaaaaaacaatcaaaagtgagtctt
tccagcgagattttaagccaaaaagtaaaaaaaaaatcaaatatttgaca
aaaatccacttttttcagattttgaccgttttttgaccatttttggtcaa
cgagtgatccaagaagcttcaaatttggccctgctttacttgattctgtc
ctccagcgaattactttgaagttttaccactgggtacctttctatcattc
aggcaggttcGCGCAGAAATAGGAGAATGTAAGCATCTCATGTAACCATG
GCTAAAAACataggagactctaagctatccaacgagctataggaacaagc
ttctaactccttccaGATCCCGAGATATaaacctttaaagtttgaactag
ctaTAACTCTTCTTGGCTTTTATTTCAGGCGATTCAGTGGCGTTCCCTAT
GAAAGAAGAATTCgccaaactttgttttgaaacacTTTTGGAATTTTCAT
TCTTCAAAGAAACTGATGACAAAGGTAAGTGGTATTCGGTCACGTAGAAT
TGTTCGAAGAGATAATTAAAACTGGATGTGTAACTGGCTCTGGTCTCATC
AACGCTTgacattaaaggttttgtttaaaaaaagagtgatatcgtttact
tactcatcagttttaattcacaagctttttcacattggattgatacgaat
gtggagcaagattggtcagaaataggaaaagaaaaacatttttctgctta
tatcagcataatataacaataggtagacactgtcctgatatgaaatatgt
gtcttaTATGAAACGGGGACACTTATATAaattaaaacctttaacattct
ttcattttcagaaGAGACACAACTTTCGCGACTGGCATTGAGTTCATTGA
TGCAAAGATGTCGCGATGTTCTTTTGAAATATGCCGAAGATGAACGATTG
AACGGAGAATTTCCACTACCTAGGTTTGTCCCTTTGTTTTCCATTTTCAG
GCGACTctccttttcaaattcaattgtCAAGGTTTGGTctctttttttct
tccattttcttATGACTTCCACTGccagttttttggacctaccccggtgg
ggtagaggtcctataaattaacctgtgttcgtccgttcgttcgttcgttc
gtctgttaccaacttttctcaggattgaatcataagAATCCTtagatttt
tggtacaaaggtgcaaaatggtggtggggaAAATGTGACGGTGCctggtt
ttcaaaattaaaaaacggtttttttggactttgtgaaaaattgaatcatt
aattttttctgattttttgtatgaaagtagggtaccatcacaggtaaaag
atggctcaagaagatttttgcaaaaaaattttgttggctcaaaaaacgca
tgtttatctatgagaatcactattaatgagcatacatcaatgttcttagt
caaattactcaatttcttttatgagatagatgttttttttttgctcatga
gggcttacttttgaagaatatatgtgtttagacatgaaattttggttgct
tggcgtgtttttatagaaaaactggccaaattcgatattttttataagca
cattatcaattaattaaatattagcttttctcgagattggctcttttatt
ctatatgattttttgcacaaagatgcataactataaaccctcgaatgtga
cggagctcgatttttggggaaaaaaatcagggtaaatttcagctaaaaaa
acggctaaaaaaggttttttggactttgtgaattattggatcattgtttt
tttctgattttttgcatgaaagtagataaaagatggctcaagctgatttt
tgtaaagaaataatttttcagctccaAAAATGCATCTTTATATCTAAAAG
AATCACTatcaataagcatacatcaatgttcttagccaaattactgaatt
ttttgatgagatagatgtttttttttactcacgaagtcttgaatgtaaaa
aaatatttcaagagcatgaaactttggtttctaaacgtttttttataaga
aacaaacaactaattttaatagatcgtcactatttgtgttttgaatgatt
ttttaatggtcacgctcacatagatatcaattatatatgtgttaaatgca
taaccaggtaggtccattaaaagtatcacttgttttttgttcttttggtt
atacagggtgtccctaattaaagtatcgagtttgaacatgcgattgagta
gaaaagtttgtgtgtgttatcgctgaaatataagaacgttctccatcaca
caggcttattacaaaaggtagttacaaggtacagggtgtccctaataaaa
gtatcgagtttgaacatgcgattgagtaaaaaagtttgtgtgtgttatcg
cttaaatataagaacgttctccatcacataggctcattacaaaaggtagt
tacaacgtataaattaatcaataaaaagagggagagcttaaaatacaatt
ttgtgaatacacacttaaaactttctactcaatcgcatgttcaaactcga
tacttttattagggacaccctgtataaatTAATcgaaatgacaaagaaaa
aagagggagagcttaaaatacaattttgtgaacacgcacataaaactttc
tactcatagttgtgtttcgactcgatactttaattagggacaccctgtat
ataaaCCTCTTGAAAAAATAGGGCCGCAAGCTTTTATAATAACATAAACA
CAGGAACATCAACGAGCAAACACACGTTGCACTAGTGTTTTATCGCTGGA
TGTACATTGCATTTAAATATCTAATAAATATTAATCAACATGACTTcgta
aaacatgaaaaatcgtGAATCTAGATAGTTGGTAGTAGCCTCTACCATGC
CGCCCACGAGACACAGAATCTTGCCTAACCGTAACAAACCGAACTTTATG
ACTTGcattcactgacctttatatatccctagactaagctatatccgcca
tcctTGATCGAAGTTTTTCTTGAATTGGTACCCGCAAAGGAGTCatagtg
ttaaaaattaacgtctaacggcgctacatcatcaaaagtattcgagggaa
agtagatctagcgctctcgatgcatttacaccactaCTGAGTAGTGCTGG
CATTAGgctaccacttttcaaaaagctccgatcaaagattttgcttagcc
gggatataaaggtcagtgcttaCGTTGCCTTTTCAGTCAGCGAAGatgag
tttggtacaggctataAGGGAAGAGGCTTTAGATATTATAAGTGAAAGGA
TCAGTTTAGGTTTACGTATGAATGGATAttatttttgcgtttttacTACT
TAGCAACGAGGTTTTAGGTTTGGTGGTTTTGAATAGGAGGAGAATTATTT
CATTCACTGTTTATTTCGTTAAGAAAACGATATTTCGTAGATTTACAAAC
TTAATTTCACAGACTTTTCCTAGTTTTTACTGAACTTTAAGGCAGGAGAT
TTCGAGGGGGGCTGTAAATTTCATTGATGATTTTTGGACcctttttcaaa
agtttatgTCAAGTAaggaatttgacaaaaattcgcaaaaaagtaaaaca
ttcttccttttttgctttatttttgttcttttttataaatttttgttcCT
AAGAAAGATCTTTCTAAAAGAAATCACGAAATGAAATTTATTCGAAAAGA
AGAATTCTCGGGCGAGATTTTTAACCCGTTCTTTCCAAATCAATTGAAAG
AACTTTGCGTCATCGTGCAATTCTTGATTATAAACCACAATTTTTTTAGT
AAGCTTCAGTTAACATTATACGAACCAGTCTGTGGGAATAAGCTTAGACG
CCAACTCTCTCTGCTCACTGACACTTCCTCAGTTGAAACTGAAGGATTTC
TGTTCCTTTTATTTTCCTTCCTGTTTTTCCCGAACGTCAAAATGGTCCAC
AAAAACTTGCGAAAACCAGGGATCATTTTTGCGTagatgaaaatgtttaa
aatgttGTTCAAGTAGTAAACGAACACCACAATTGGATAAGTTAATAGCC
TGTAACTATGGATAATAGTTGAGAAATAAGGCTTGTAATAGTTTGCATAA
ATCACTAGACTCCACCGTAAGATATCTAACAACCTCACCGGTACAACAGT
AACGGCGAAAATGAAGATAAGTCCGCTCAAAGTATGTAAAGCACGTCGAT
TCCTGAGCCGGCTCAAATCGTTTAAGGAGAATTTGTTGACCTGTACTTCC
TTGTGTATGGTTATCGATGACCTCCGATAAAAATAATACATCACTGCTAG
TGGTACAAAACTGTCCAGAACGTATCTTCCTGCTGTTTCCGCTAAATAAG
GCTCCAAAGGGACATCGTATACGCAGCTCAGAAGGCCATCGTACACTTTC
AGCTTTATATTCAAATGATACAAGTAGGGATAGATGGGTACGGTCCAGAT
TAGTAAACAAACCAAAGTGTATTTCCTTTTACCGATACGTGGTTTGAAGG
GATGGACAATAGATCGGTAGCGAGCATATGAGATTATCATTAATAGCCAA
CAGGAAACCAAAGGACACATATTAGTCGGGAACGTGCCCAGAAAAACACA
TGCAAATTCACCCAACGTCCAAGGAGGAACATTGTATTGTGGGTAGAATA
TAGTGACATTGAAGCTGGTGAATAAATCTACCAACGCCAAATTGATGATG
AGAAAATGGTATGAACTCATCTTTCGTAAACCTCTCCTTAAACTCTTCTG
CACGAAATAAATAATGATCAACAAATTCCACAAACTTCCGATGCCAAAAA
TAATGGGGAAAATGTTGAGGAAGAAAGAGGCGACCGTGTTTTGTGCCCAT
TGAAACACTTTGTCTTCCTGTTGAAAAGTTGAGATCGTTGTCACATTGTT
GCTGTTATTTGAATgcgccattttgaaagaaagttcGTAACTCTTAGCAA
CGTTTGTAGTCTTGTAAAAGTTATATTGTTCAATTTCCAAGAATATGTCG
ACAAAACATTAATCTCCGTTTAAGACTAAGTTCACGTAAGAATGTGAGAT
CAaacaaatctcaaaatttgtcatttgaAATTCTTCGTGAAAGAAAANAA
ACCTCTCCTTAAACTCTTCTGCACGAAATATACAATGATCAACAAATTCC
ATAAACTTCCGATGCCAAAAATAATGGGAAAAATGTTGAGGAAAAAAGAG
GCGACCGTTTTTTGTGCCCATTGAAACACGTTGTCTTCGTGTGGAAAAGT
TGAGATCGTTGTCACATTGTTGCTGTTATTGGAATgtgccattttgaaag
aaagttcGTAACTCTTAGCAACGTTTGTAGTCTTGTAAAAGTTATATTGT
TCAATTTCCAAGAATAAGTCGGCAAAACATTAATCTCCGTTTAAGACTAA
TAAGTTCACGTAAGAATGTGAGATCTTAGCTAATGACTCGATCAAGCaaa
tctcaaattttttcaattgaaaTTCTTCGTGAAAGAAAAACATGGAATAT
ATAGAATTGAATAAACAATGGAGAATCACTAACATAAGTTATGAATGACA
ATCAAAACCGATCGCTTAGAAACATGCATACATTAATTGACAACATCAAA
ATGTGAACAAAATGCAATAGTGAaaccttttttctttcaaagcaaaccgC
AAATTTCTTTATTCTTCCACCGGGGTGTTTTTTATAACAAATCCTGAAAA
TTGCAACACCACCAACCAAATTCCTCCAATGGGGGACACGCGAAACAAAT
CTACTCTTATAAATTTCCTTAGAACAAAAAGGGCATAAAAAAGGTAGCTC
TGATTGAAAGTCTAAGTTCTGCTGCATTTATTAACCATTTATTAACATTT
CACTTTTTTAGGGCACGGATGTTCGAAATCTCGTTTGCTATCAAAGCCAT
ATCCACTTTGCTTTCGTCCCTCAAAAAGACAGTGGAGACACGACCAAATA
TACGTAAGCTAGCTCTCATTACCCCCATttttactttaattggattaact
ttcgcgagattaGATTTTGCgatttcgcaaatttttgccattttcgcgaa
gtTAAAACTTGTGAGGttcctgactcgcgaaattaaaatccaccaaaaaa
ttttgaaaatcgcaTTTTCGGTGGATAAACCAGTCCTAAGCCTccttttg
tggcaaaaatggctatttctcagctgttttcaggcttattcgcgaatttt
ttcaaaactccgACTAGCAAAATTAAATCGAGAAAATTTGCCTCATAAAA
TTCCTCACATATAATAACAAAGAATCAAGTTATAGTCATTTAAGAGAATT
TCTTAGTTAGGATCTATAATGATTATCATCCCCACCGACAAAGATGAAGT
TGCGCATCTTAAATTTATCCGGAAGAATGTTAGAATCGGCAACCGCTAAG
GACTacaatcatttttttataagaatggtgtaaatccaattcatcatgga
tattcttaactttgtTGAGAAAATCAtcctactcttgtctcccgaataga
cgtcacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatcatggacat
tcttataaagtgtattcttattaaaaaaacgtgtatcatttAAACGAACT
TCAGTCGTATTAtgtattgttttattttctcatttcagTGGATGCGACAC
AGTGGAGTGAGGTGATTGGTTTATATCCAGTGATCTTAGAATGTGTCACG
TGTACATCACATGACGTTCGAATCGCTCTCAAAGAAGCACTGTTGGAATT
CCAAGACTTGCTGGCACCTCCTCACCCAAAAATGTGACGATATTTGAAAG
CTTTCCTTACGCCTTTTGAATGGTCATTGCAGATAACAAATTGGAGTAAA
AAATCTCACCAGGTTTAGCAGTAGACTGGAGCGAAGTGAAACCAAAGTAT
TTGTTAGCGATAAACATGCATCCGTTTGGAACTTAAAGGATAAATGCATT
ATTGACAAAACGTAAATCTAcgaatttttcagaaaagttcTATCCAATCC
ACAATTTATGGTGGAGCTTCCAAGGTAGTGAAAATCGCAGGTAGAATGGG
TTCATGTCTTGCGGCTTCTACTCCAGGTGATTATTATCTAATATTAGCCG
CATACCGGGTATaaactgttttttataagaattgcaTAAATCGAGGTGAG
CCTCGTCATCGGtgaacatttttaattttgagcCTTGAAATATTCTCTTA
AGTAATAATTTTTCCCTTCATTTTTGTCTCGAACGTGCgaaaaaaaacac
tcaaaagCAAAATGAAACTTACTTCTTTGGCATGAAGTTTGATTTGATTA
GGGAAACATTCTAATAGGTATCGTATAATATTTCTACGGAGACAATTTTT
TCGTTTCTCtcagttttttttggaattgcaCAGATTTCCTTTGTTTATTG
GTAATAAATAgaaattttagttttgtttttaaaaatacgGAACCACCGTG
AAATGTTTAGACCTTTTGGACAacaaaaaccattttttgccCTCTTTTCC
TGATATTCTTGGCAAATTTTTAGTATTCGAAGTCCTCTTGAGAGAATTGG
CGCTCGATTCCCTCAGTGTATTAATTTTGGGATGtacttaatttggcgat
tggccgaAATATATTATTGGCAGGGGAGAAATTTTAAAGCTTGTATGATG
GATTAGGTGTCTAAAAATAAACCCCTTCCTACTgtaaaaattggcaaaaa
tatcgtccccggtggaaaatgatcctccaatttttgttcccactgaaaat
aatcaaataaagcaatcctcactgcaaaatattatactatttttcccatc
cccactgaattttctgacttgaaaatgagtaaattcAAATCCCCAGGCAT
AAACAATGTAGTAATATCAATcctcatcgagtttcagtcccaCTGTTTGA
ATGAATCCCACCGGAtcagtgagaagggggtgttaaaattaatacactta
agGTATCTCACTTAATAATTAgcataattaatttttgattaattttattg
ATTATTTCATGTTAAACATTTATAGCTTGattattttagtttagttttct
tTTGATCTTAAATCGCAATTTCATGAAATCCTCATTCGAAACATCATTTA
CATTCCCCATATTTTGAATTGTGAAATCGCACAATTTATTGCGATAAATG
GATTTTAGGGGCATGGCATTTAGAATTAAtatttaaacaatttttataaa
acttaactttattattttccaatgaaattattcaattttttttccttcta
tttTTTGACAATATAGTAATGAACGAAATACGTCGAAAATATGAATGGTT
TTTTTTGGAGAGAGTCtagaccatagatttataaagcccgaagggctaga
tgttgtGCTTCGGCTGAAATATGTGTCGTGGTTAGGTAGAAAAtgctacc
taggtcacgtgacgctacaatagaatttcagcgcttgaccaatcagaagc
ttcgcgggttttcgaaaacaatagcaac

Coding sequence (CDS) from alignment at sc0001981:17310..28337+

>TCONS_00038980 ID=TCONS_00038980|Name=TCONS_00038980|organism=Clytia hemisphaerica|type=CDS|length=1716bp|location=Sequence derived from alignment at sc0001981:17310..28337+ (Clytia hemisphaerica)
ATGAAAGAAGAATTCgccaaactttgttttgaaacacTTTTGGAATTTTC
ATTCTTCAAAGAAACTGATGACAAAGaaGAGACACAACTTTCGCGACTGG
CATTGAGTTCATTGATGCAAAGATGTCGCGATGTTCTTTTGAAATATGCC
GAAGATGAACGATTGAACGGAGAATTTCCACTACCTAGGGCACGGATGTT
CGAAATCTCGTTTGCTATCAAAGCCATATCCACTTTGCTTTCGTCCCTCA
AAAAGACAGTGGAGACACGACCAAATATACTGGATGCGACACAGTGGAGT
GAGGTGATTGGTTTATATCCAGTGATCTTAGAATGTGTCACGTGTACATC
ACATGACGTTCGAATCGCTCTCAAAGAAGCACTGTTGGAATTCCAAGACT
TGCTGGCACCTCCTCACCCAAAAATGTGAATGAAAGAAGAATTCgccaaa
ctttgttttgaaacacTTTTGGAATTTTCATTCTTCAAAGAAACTGATGA
CAAAGaaGAGACACAACTTTCGCGACTGGCATTGAGTTCATTGATGCAAA
GATGTCGCGATGTTCTTTTGAAATATGCCGAAGATGAACGATTGAACGGA
GAATTTCCACTACCTAGGGCACGGATGTTCGAAATCTCGTTTGCTATCAA
AGCCATATCCACTTTGCTTTCGTCCCTCAAAAAGACAGTGGAGACACGAC
CAAATATACTGGATGCGACACAGTGGAGTGAGGTGATTGGTTTATATCCA
GTGATCTTAGAATGTGTCACGTGTACATCACATGACGTTCGAATCGCTCT
CAAAGAAGCACTGTTGGAATTCCAAGACTTGCTGGCACCTCCTCACCCAA
AAATGTGAATGAAAGAAGAATTCgccaaactttgttttgaaacacTTTTG
GAATTTTCATTCTTCAAAGAAACTGATGACAAAGaaGAGACACAACTTTC
GCGACTGGCATTGAGTTCATTGATGCAAAGATGTCGCGATGTTCTTTTGA
AATATGCCGAAGATGAACGATTGAACGGAGAATTTCCACTACCTAGGGCA
CGGATGTTCGAAATCTCGTTTGCTATCAAAGCCATATCCACTTTGCTTTC
GTCCCTCAAAAAGACAGTGGAGACACGACCAAATATACTGGATGCGACAC
AGTGGAGTGAGGTGATTGGTTTATATCCAGTGATCTTAGAATGTGTCACG
TGTACATCACATGACGTTCGAATCGCTCTCAAAGAAGCACTGTTGGAATT
CCAAGACTTGCTGGCACCTCCTCACCCAAAAATGTGAATGAAAGAAGAAT
TCgccaaactttgttttgaaacacTTTTGGAATTTTCATTCTTCAAAGAA
ACTGATGACAAAGaaGAGACACAACTTTCGCGACTGGCATTGAGTTCATT
GATGCAAAGATGTCGCGATGTTCTTTTGAAATATGCCGAAGATGAACGAT
TGAACGGAGAATTTCCACTACCTAGGGCACGGATGTTCGAAATCTCGTTT
GCTATCAAAGCCATATCCACTTTGCTTTCGTCCCTCAAAAAGACAGTGGA
GACACGACCAAATATACTGGATGCGACACAGTGGAGTGAGGTGATTGGTT
TATATCCAGTGATCTTAGAATGTGTCACGTGTACATCACATGACGTTCGA
ATCGCTCTCAAAGAAGCACTGTTGGAATTCCAAGACTTGCTGGCACCTCC
TCACCCAAAAATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023437XLOC_023437Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038980-exon-sc0001981-1491911889:17310..18583TCONS_00038980-exon-sc0001981-1491911889:17310..18583Clytia hemisphaericaexon
TCONS_00038980-exon-sc0001981-1510915933:17310..18583TCONS_00038980-exon-sc0001981-1510915933:17310..18583Clytia hemisphaericaexon
TCONS_00038980-exon-sc0001981-1575043694:17310..18583TCONS_00038980-exon-sc0001981-1575043694:17310..18583Clytia hemisphaericaexon
TCONS_00038980-exon-sc0001981-1491911889:18921..19032TCONS_00038980-exon-sc0001981-1491911889:18921..19032Clytia hemisphaericaexon
TCONS_00038980-exon-sc0001981-1510915933:18921..19032TCONS_00038980-exon-sc0001981-1510915933:18921..19032Clytia hemisphaericaexon
TCONS_00038980-exon-sc0001981-1575043694:18921..19032TCONS_00038980-exon-sc0001981-1575043694:18921..19032Clytia hemisphaericaexon
TCONS_00038980-exon-sc0001981-1491911889:23921..24012TCONS_00038980-exon-sc0001981-1491911889:23921..24012Clytia hemisphaericaexon
TCONS_00038980-exon-sc0001981-1510915933:23921..24012TCONS_00038980-exon-sc0001981-1510915933:23921..24012Clytia hemisphaericaexon
TCONS_00038980-exon-sc0001981-1575043694:23921..24012TCONS_00038980-exon-sc0001981-1575043694:23921..24012Clytia hemisphaericaexon
TCONS_00038980-exon-sc0001981-1491911889:26498..27050TCONS_00038980-exon-sc0001981-1491911889:26498..27050Clytia hemisphaericaexon
TCONS_00038980-exon-sc0001981-1510915933:26498..27050TCONS_00038980-exon-sc0001981-1510915933:26498..27050Clytia hemisphaericaexon
TCONS_00038980-exon-sc0001981-1575043694:26498..27050TCONS_00038980-exon-sc0001981-1575043694:26498..27050Clytia hemisphaericaexon
TCONS_00038980-exon-sc0001981-1491911889:27167..28337TCONS_00038980-exon-sc0001981-1491911889:27167..28337Clytia hemisphaericaexon
TCONS_00038980-exon-sc0001981-1510915933:27167..28337TCONS_00038980-exon-sc0001981-1510915933:27167..28337Clytia hemisphaericaexon
TCONS_00038980-exon-sc0001981-1575043694:27167..28337TCONS_00038980-exon-sc0001981-1575043694:27167..28337Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038980-proteinTCONS_00038980-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001981supercontigsc0001981:17310..28337 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.77818	2.69114	1.71737	1.45791	11.7526	10.6134	13.6956	16.2771	7.82621	10.031	7.62131	8.11567	10.8319	11.5013	6.57661	7.71873	6.37625	6.0219	7.15015	6.01793	6.58573	6.4705	5.24445	6.46893	10.1812	10.5952	5.57484	5.21493	8.03018	6.11681
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032817Mon2_C
Blast
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BLAST of TCONS_00038980 vs. Swiss-Prot (Human)
Match: MON2 (Protein MON2 homolog OS=Homo sapiens GN=MON2 PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 1.067e-37
Identity = 72/138 (52.17%), Postives = 104/138 (75.36%), Query Frame = 2 
Query: 1199 MKEEFAKLCFETLLEFSFFKETDDKEETQLSRLALSSLMQRCRDVLLKYAEDERLNGEFPLPRARMFEISFAIKAISTLLSSLKKTVETRPNILDATQWSEVIGLYPVILECVTCTSHDVRIALKEALLEFQDLLAPP 1612
            ++EEF+K+CFETLL+FSF  +    +E  +SR+ALS L++R +DVL +Y EDERL+G+ PLPR ++ EI F +KA+STL+ SLKK   T+P  +D   W++VI LYP ++EC+TC+S +V  ALKEAL+ F+D + PP
Sbjct: 1574 LREEFSKMCFETLLQFSFSNKVTTPQEGYISRMALSVLLKRSQDVLHRYIEDERLSGKCPLPRQQVTEIIFVLKAVSTLIDSLKK---TQPENVDGNTWAQVIALYPTLVECITCSSSEVCSALKEALVPFKDFMQPP 1708
The following BLAST results are available for this feature:
BLAST of TCONS_00038980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MON21.067e-3752.17Protein MON2 homolog OS=Homo sapiens GN=MON2 PE=1 ... [more]
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