TCONS_00038952 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038952
Unique NameTCONS_00038952
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2466

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038952 ID=TCONS_00038952|Name=TCONS_00038952|organism=Clytia hemisphaerica|type=transcript|length=2466bp
TTTGacacaaaaagtttcataaAAATCCCCTGGCGGAAAACTGAGGCGTT
AAAATagaaatgaaacaaaagaaaagtatatAATATGGAAAACATGACAA
CACAAATAAGCAATAAAACATCTGAAAAAGAAGGAGGGATCCACCTACAT
TGTCTGTCTTGTTATTCTTCATCATGTTACATTTTCAAACAATGTCCTAT
GGTGTACTGTTCCAACCAATGTGGTGTGCAATACCACCAATGTAAAGAGA
AAGAGCATGTTCATGTGTGCAGGGAGCAGATTCGCCCATGTGTCAATAAG
CTTTACGGATGTCCATTTGAAGTGACCAGTGTTGAACTACTTACTCATTT
AGAGgTTTGTCCAGCAAACGTTATTCATTGTGCAGTCAATTGGAATAGGG
CTCCTTTGTACTCCAAGGTTCGTGAGCAATGGTTACCATTCCATGGTAGG
AATCCTGTAAGCGTTGAAGGACAACTTGATGTGGAGTTTGCTTTGGCTGA
TCAAGAAAGATTAAGGAAGGAATACAGATATCGAATGATTAGAGGTGCTC
GGAAACGTAGCAGTCTAAACAAGAAAGTCGGGCGGATCGAAAAAACGCGA
ATCAAGGATCTGGAAAGACTTATCAGCGGTGGCAAAACAGAGAAAGACAT
TCCGACAAGTGAAGCAAAAGACGAAGTAAACAATGTTTTCGTGACGTGCG
ATAAATTATTTCATGAAGAATTACACGAAGCTGGTAACAAAGACCATGTA
TCCAACACTAACATCCGTGACTCTTATTTTGACGTCCCTGATACGTACTA
CACCATAAACCGGAGCGGTGCTAGTACCAATTATAAGCAGCAGATCATCA
CTGGGTCGGAACCCGCTAGTAAGTCTTGGCGTGAGGACGACGAAGATCCG
CTCACGTTAGAGGAGATCGATAACCGAAGACAAGTTTATGATGATTTAAG
CTGTAAAGCTTACGGTGTCGGGCTCGGATTGAATATTAACGTCGAATGTT
TGCCATCTTATTTCGATCAGTACCCACTCTACCGTTTCGCGTGCGGCTCG
TTGTTCCGTAGAGATCAATATAAATGGCATTGCCAAAATAGCCATGGTGA
TATCGGTTTCCATGTCAACGGCTGGCTCATGCAACGGTGCCCCCTCGCAC
AGTATGGGTGCCCATACTCGCAATACCGCTTTCAACCTAAGGACTGCAGT
GTCCGGtttcttaaaaacttttcatgcTTCACAGCGCCTTACAACGATTT
GAACTTGACGAAAAAGACTAGAAATTCTGAGGATGTTCATATTTTCGATT
TGCCGAATGAacttttgatttatttattgttCTTCCTGGATAATTTATCT
TTAAATTGTTTGGCGAAGACGTGTCATTTCTTTCAAGACTTGTGTTGCAG
CATCGTTGATCGTGCCGGACTGGTTATCGTCAGCTGGTGTAAGAAGACGT
ATGAGAAATGTGGATCCAGCTCCTGGAAAGAGGATAAAAAGattcgaatg
ttttcgaCAGGTTTTTCACCCATTCGACATTGGATCTACAATGAAGTGCC
GCATATCGGTCAACATCTGAAAACATGTGCTTTCTTCAAACGAAGGAATC
TTGGTGATGAGAAAATCAAATTACCAGTGATATCGTAAGATTTTATGAAA
gctaacccagctggcacacaacgtcgtttcaacctttttctaatattcac
aacgtccatataacgttagatgaacgttgaaacagcgtTGTGTTCCAGCT
GGGAAAAGAGCTAAAAAGTTCTTGCTCTTTAAAATGTCAGGttaattttg
acaatttctcatttcttttataagaaacacctTTGTAAGAAGAAAGAGGC
TCTTTGGTGAAAACTTGAAGTCGAATTAAGAATACCCAAATCCTCAGATT
TTAGAAGAGAATTTTAATTTATTAAGtcaatactctcgggtacctaatag
ccggggggattggaataagcggggggattggaaaaaatctcaaaacttaa
caaGCGGggaggttggaataaaaatgtcatgggtggaaaatttttgaaaa
gaaggctaaattaataagcggggggttggaataagaatgttctgggtgga
aaatttgcgaaaaattaattagcggggagacggctattaggtacccgagg
gTAAGTGAATAAAATAAGCATAGTAAGAATAAAATATAACACCAGCCGAG
CCATCCACAATTTAccgtttcttataaaaaaactgtgtTCTTATGATGCG
AAGAAACTTTCTATATTTGACTATTGTTCGTAAgaagaaatttatttata
attttaaagtttgtaaattcaagtatttttttcaatttatttaattttgt
gtaaaaaatgagtttttatgTGTCGTATTTGATCAGAATTTTTTGTAACG
TATgtataatattatttttgtatttctaTATATGTCGGATGAATTTGAAA
AACGCTCAAATCCACA
Run BLAST on NCBI

protein sequence of TCONS_00038952-protein

>TCONS_00038952-protein ID=TCONS_00038952-protein|Name=TCONS_00038952-protein|organism=Clytia hemisphaerica|type=polypeptide|length=517bp
MENMTTQISNKTSEKEGGIHLHCLSCYSSSCYIFKQCPMVYCSNQCGVQY
HQCKEKEHVHVCREQIRPCVNKLYGCPFEVTSVELLTHLEVCPANVIHCA
VNWNRAPLYSKVREQWLPFHGRNPVSVEGQLDVEFALADQERLRKEYRYR
MIRGARKRSSLNKKVGRIEKTRIKDLERLISGGKTEKDIPTSEAKDEVNN
VFVTCDKLFHEELHEAGNKDHVSNTNIRDSYFDVPDTYYTINRSGASTNY
KQQIITGSEPASKSWREDDEDPLTLEEIDNRRQVYDDLSCKAYGVGLGLN
INVECLPSYFDQYPLYRFACGSLFRRDQYKWHCQNSHGDIGFHVNGWLMQ
RCPLAQYGCPYSQYRFQPKDCSVRFLKNFSCFTAPYNDLNLTKKTRNSED
VHIFDLPNELLIYLLFFLDNLSLNCLAKTCHFFQDLCCSIVDRAGLVIVS
WCKKTYEKCGSSSWKEDKKIRMFSTGFSPIRHWIYNEVPHIGQHLKTCAF
FKRRNLGDEKIKLPVIS
Run BLAST on NCBI

transcript from alignment at sc0001975:9977..16326-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038952 ID=TCONS_00038952|Name=TCONS_00038952|organism=Clytia hemisphaerica|type=transcript|length=6350bp|location=Sequence derived from alignment at sc0001975:9977..16326- (Clytia hemisphaerica)
TTTGACACAAAAAGTTTCATAAAAATCCCCTGGCGGAAAACTGAGGTATT
AACCATTTTACCTTATTGAAATGGCCTTCCCTTTTAAGGTTTAAACTCTA
GTCTTAGTTGTTGTGTGTTTAGCATTGAAACTGCTTCCATATAAGGCTAA
TATCTCTTATTATTCTTTCCCTTTTGTTTTTTCTTGTACACTGGATGTAT
ATCTTTATGTTTATGTTAATAATAATTGGCCTTAAGATTTTGATTTGGTA
TTTACTGTTAGCCAATCACTGCTCCTAACTAACGTGCTCAGAGTAAGAAT
TTTTTCTGGTGGGGTCTGGAAATCATCCTGATTATAAAAAGTATTTATTA
AGGCCACTTTTTTGTACATTTTAGGCGTTAAAATAGAAATGAAACAAAAG
AAAAGTATATAATATGGAAAACATGACAACACAAATAAGCAATAAAACAT
CTGAAAAAGAAGGAGGGATCCACCTACATTGTCTGTCTTGTTATTCTTCA
TCATGTTACATTTTCAAACAATGTCCTATGGTGTACTGTTCCAACCAATG
TGGTGTGCAATACCACCAATGTAAAGAGAAAGAGCATGTTCATGTGTGCA
GGGAGCAGATTCGCCCATGTGTCAATAAGCTTTACGGATGTCCATTTGAA
GTGACCAGTGTTGAACTACTTACTCATTTAGAGGTATGTGCAATAGAATA
AATCGATGAAAAGACACCAAATTACTTTTAGGTGTTTATATTATGTTTAT
TTTTTTGGACCTACCTCGTAGGTCCTTTAAATTAACCTTCGTTTGTCCGC
CGTCTATTCGTTCGCTTGTTACCTGTCTTTCTCAGGATCAGCCTATTAGT
TTTTTCTAATTGTTTGCATAGTGATGCCAAATGACAGTACCCAAAAAGTG
ATGGAGCCCGACTTTTGAGAAAAAATGGGATTTTTTGGACATTGTGTGAA
ATTCCAGTCCAAACCAAAAAATCCAGTAGTACCTGCTTTATTTGTATTTT
ACAGACCATAGAGATATTACAGACCATTCTCAAAATACTAATTTTCGTTC
TGAATTAGCCAATACATGAAGTCTCAGTTTTAAGGCTATAACTCCTGACC
ACTTGATTTAAAATATAGAATACTTTTAGAAGGTACCATAACCGTTGTCT
AATTCTCAAGTTACAAGCTTTTATGCCTGTTTGAAATTTTGGATTTTAAA
ATAAAAGCTGACAATTTTCACTCTCTTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTCACTTAGTACTCAGATGTACTAACTGCAAAAAAGGGTGGTCC
CCTGCTAAAAATTTGCCAAATTTTGGTACTAATTGTGTAAAAAATAGGAT
TTTGTGAGAAAATAAAAAAAAAGACAATATTTTACCAAAAAAATTTTTTG
GGAAGTAGATTTTTTTTTCAAATTTTCGAATTTTTTTTTTTAAATCTTAA
AAACAATTTGCTGGTTGCAATAGAAATTTGATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTAATTACCACAGTAAAATAATGATAAAAAC
TAGACTTACATAATGTGAACAATATGCAAGAAATATTTTTGCTCTTATTT
TTAACAATCATAATCGTATATTGACAAACAATATATTGCATCTTCATATT
ACGGTAAAGAAATTTTGTTTTGTTCCTTGAATTAGTATTTTTTTTTTATT
TTTAGCTGGGATCTGGGAGTCTGGGCTGAAGGTGGGAATTTTAGGATAAG
GTGGGACCTGAATTTTCAGGTGGGACCTGGAACCCCCTTGCACACTATGA
TGATGTCTTGTACTAACTGCTTCACCTCCCCCTGCTCTCTTATCAAAAAT
TGTTTCGTGCTGGAAAGGTTAACATTCTCCTTATTCGCCTACACAAGAGA
TTCTAAAAAAATAGAATATCTGCAGCACAGCTTCAATTTTTAGTTGGTCT
GTACTGATCAGCTTTTTGAACCTACCTTGTGGTCCTACTATAAGTTAACC
TGTGTTCGTTCGTTCGTTACCAGCCTTTCTCGGGATTAGCTCATAGGATT
TTTTAGATTTTTAGCGCAAAGATTCAAAACGGTGATTCCCAAAATGCGAT
GGAGTCCAATTTCGAAGAAAAAAATTATTCTGGTCGCCAGTGGTTTTTCG
GGAATTCCTCGTGATTTTCTCATTCGTTTTTATTGACGCAGATTGACGTT
TTGTCTATTTTGAATTTAATGTTTTCTGTTGATCAGCCAGGTAGGTCCAT
AAAAGAATCACCTACGAGGTCCATAAATGAATCACTTGTTATTGTTTTTT
TAATTCAGGTTTGTCCAGCAAACGTTATTCATTGTGCAGTCAATTGGAAT
AGGGCTCCTTTGTACTCCAAGGTTAGTACAGCCCATCATATAATGTCTAT
CAGCCTCAGAAATTGTGTGACAATTTTCTATTTATTCTCTAAAAAGCCCC
TTTTAACTATGAAAATACTATCTTTGCTGGAAAATCGGGTTTTGGGTATA
CTTAGAAAGTTATACTCCAAAAAGATGCCTTTTTTATCTATGAAATTCAA
AGGATGAAAAAGTGGTGTTTTAAGAGTAGATCTTCTTAAGTGATTTCTCA
TAATTTATCTTTAAGATACCGGTTTATGAAGTATTCTGTTTGGGTATTAT
ATTGTAAAAGGTTGGAATGATAAAAAAGGGGTAATTGGACTATAAAGATA
AAGAGAGACCTCCTTGCACGATCCCCTTGTACTAACCAATGCTCGAAATA
ATGATTATCTTTAGATTCTTTTCACTGTGACTTCACGTAATATCGATTTC
TTTTTATAATGTTGGTAAATTTGTTATTGATTTTTCATCAGGTTCGTGAG
CAATGGTTACCATTCCATGGTAGGAATCCTGTAAGCGTTGAAGGACAACT
TGATGTGGAGTTTGCTTTGGCTGATCAAGAAAGATTAAGGAAGGAATACA
GATATCGAATGATTAGAGGTTAGGGAATTTGTTGTATGTTTCTAAGCTGA
AACGGTCTTTGGAAATAAGACCCTCCTGATAATATATGCAGGGTGTTACG
GGCGGGACCTTCATAATCTTGAAAATAAATCTTCCAAGTCTTGAAAAGCT
TGAGAAGCATAATTTTCTTTAATAATAATCTTTTCCTTGTCTTGGATGGG
GTTGATACTTTAGTTTTGAAGTCTACTTTTTATGAATAAGGAATCACAGT
TCAAGCATTTTGTTTTGGGAAATATTCCATTATCATTGAATCTTTTTTCA
GGTGCTCGGAAACGTAGCAGTCTAAACAAGAAAGTCGGGCGGATCGAAAA
AACGCGAATCAAGGATCTGGAAAGACTTATCAGCGGTGGCAAAACAGAGA
AAGACATTCCGACAAGTGAAGCAAAAGACGAAGTAAACAATGTTTTCGTG
ACGTGCGATAAATTATTTCATGAAGAATTACACGAAGCTGGTAACAAAGA
CCATGTATCCAACACTAACATCCGTGACTCTTATTTTGACGTCCCTGATA
CGTACTACACCATAAACCGGAGCGGTGCTAGTACCAATTATAAGCAGCAG
ATCATCACTGGGTCGGAACCCGCTAGTAAGTCTTGGCGTGAGGACGACGA
AGATCCGCTCACGTTAGAGGAGATCGATAACCGAAGACAAGTTTATGATG
ATTTAAGCTGTAAAGCTTACGGTGTCGGGCTCGGATTGAATATTAACGTC
GAATGTTTGCCATCTTATTTCGATCAGTACCCACTCTACCGTTTCGCGTG
CGGCTCGTTGTTCCGTAGAGATCAATATAAATGGCATTGCCAAAATAGCC
ATGGTGATATCGGTTTCCATGTCAACGGCTGGCTCATGCAACGGTGCCCC
CTCGCACAGTATGGGTGCCCATACTCGCAATACCGCTTTCAACCTAAGGA
CTGCAGTGTCCGGTTTCTTAAAAACTTTTCATGCTTCACAGCGCCTTACA
ACGATTTGAACTTGACGAAAAAGACTAGAAATTCTGAGGATGTTCATATT
TTCGATTTGCCGAATGAACTTTTGATTTATTTATTGTTCTTCCTGGATAA
TTTATCTTTAAATTGTTTGGCGAAGACGTGTCATTTCTTTCAAGACTTGT
GTTGCAGCATCGTTGATCGTGCCGGACTGGTTATCGTCAGCTGGTGTAAG
AAGACGTATGAGAAATGTGGATCCAGCTCCTGGAAAGAGGATAAAAAGGT
ATAATCTTTTTCTTGGTGTTGTCTTTGTCACCATTCTTAATGTTTTTATT
AATAGCAAGGCTTAAGTTGAAATCAGGGGGTACTAAGTGTTGAATAATGT
TGGGTAAGTTCGGACATGACCTCCGAAAACCGACACCTTGCGACAAAATC
GGTGATAAAGTGATCTTTAGATAGAGACAATTTTGGAAAATTCCCTAACC
TTAGAGAGATTTTTTAGACCTTTCATGAGAGAACCCCGAGCCTTAGAAAG
ATTATTTTGACTTGTTGTTGTTTTTTGTAACCGTAGTTACCCTAAGAGAG
AATTAGGAAGGTAAAAACAAAAAATGCAGCCTGATTTTTCCGGAATTATT
TCTTGATCGTTTGGGCAATGGGCGAAAAAGAAAGTTAGAAGCCAGATGGA
TTTGCTTTTCTGTGTTGTTGATTAATTTGATTAACTCCATGACATATTTT
CATTCTCAAAAATCTTGTTTTTCAGATTCGAATGTTTTCGACAGGTTTTT
CACCCATTCGACATTGGATCTACAATGAAGTGCCGCATATCGGTCAACAT
CTGAAAACATGTGCTTTCTTCAAACGAAGGAATCTTGGTGATGAGAAAAT
CAAATTACCAGTGATATCGTAAGATTTTATGAAAGCTAACCCAGCTGGCA
CACAACGTCGTTTCAACCTTTTTCTAATATTCACAACGTCCATATAACGT
TAGATGAACGTTGAAACAGCGTTGTGTTCCAGCTGGGAAAAGAGCTAAAA
AGTTCTTGCTCTTTAAAATGTCAGGTTAATTTTGACAATTTCTCATTTCT
TTTATAAGAAACACCTTTGTAAGAAGAAAGAGGCTCTTTGGTGAAAACTT
GAAGTCGAATTAAGAATACCCAAATCCTCAGATTTTAGAAGAGAATTTTA
ATTTATTAAGTCAATACTCTCGGGTACCTAATAGCCGGGGGGATTGGAAT
AAGCGGGGGGATTGGAAAAAATCTCAAAACTTAACAAGCGGGGAGGTTGG
AATAAAAATGTCATGGGTGGAAAATTTTTGAAAAGAAGGCTAAATTAATA
AGCGGGGGGTTGGAATAAGAATGTTCTGGGTGGAAAATTTGCGAAAAATT
AATTAGCGGGGAGACGGCTATTAGGTACCCGAGGGTAAGTGAATAAAATA
AGCATAGTAAGAATAAAATATAACACCAGCCGAGCCATCCACAATTTACC
GTTTCTTATAAAAAAACTGTGTTCTTATGATGCGAAGAAACTTTCTATAT
TTGACTATTGTTCGTAAGAAGAAATTTATTTATAATTTTAAAGTTTGTAA
ATTCAAGTATTTTTTTCAATTTATTTAATTTTGTGTAAAAAATGAGTTTT
TATGTGTCGTATTTGATCAGAATTTTTTGTAACGTATGTATAATATTATT
TTTGTATTTCTATATATGTCGGATGAATTTGAAAAACGCTCAAATCCACA

Coding sequence (CDS) from alignment at sc0001975:9977..16326-

>TCONS_00038952 ID=TCONS_00038952|Name=TCONS_00038952|organism=Clytia hemisphaerica|type=CDS|length=7770bp|location=Sequence derived from alignment at sc0001975:9977..16326- (Clytia hemisphaerica)
ATTCGAATGTTTTCGACAGGTTTTTCACCCATTCGACATTGGATCTACAA
TGAAGTGCCGCATATCGGTCAACATCTGAAAACATGTGCTTTCTTCAAAC
GAAGGAATCTTGGTGATGAGAAAATCAAATTACCAGTGATATCGTAAGTG
CTCGGAAACGTAGCAGTCTAAACAAGAAAGTCGGGCGGATCGAAAAAACG
CGAATCAAGGATCTGGAAAGACTTATCAGCGGTGGCAAAACAGAGAAAGA
CATTCCGACAAGTGAAGCAAAAGACGAAGTAAACAATGTTTTCGTGACGT
GCGATAAATTATTTCATGAAGAATTACACGAAGCTGGTAACAAAGACCAT
GTATCCAACACTAACATCCGTGACTCTTATTTTGACGTCCCTGATACGTA
CTACACCATAAACCGGAGCGGTGCTAGTACCAATTATAAGCAGCAGATCA
TCACTGGGTCGGAACCCGCTAGTAAGTCTTGGCGTGAGGACGACGAAGAT
CCGCTCACGTTAGAGGAGATCGATAACCGAAGACAAGTTTATGATGATTT
AAGCTGTAAAGCTTACGGTGTCGGGCTCGGATTGAATATTAACGTCGAAT
GTTTGCCATCTTATTTCGATCAGTACCCACTCTACCGTTTCGCGTGCGGC
TCGTTGTTCCGTAGAGATCAATATAAATGGCATTGCCAAAATAGCCATGG
TGATATCGGTTTCCATGTCAACGGCTGGCTCATGCAACGGTGCCCCCTCG
CACAGTATGGGTGCCCATACTCGCAATACCGCTTTCAACCTAAGGACTGC
AGTGTCCGGTTTCTTAAAAACTTTTCATGCTTCACAGCGCCTTACAACGA
TTTGAACTTGACGAAAAAGACTAGAAATTCTGAGGATGTTCATATTTTCG
ATTTGCCGAATGAACTTTTGATTTATTTATTGTTCTTCCTGGATAATTTA
TCTTTAAATTGTTTGGCGAAGACGTGTCATTTCTTTCAAGACTTGTGTTG
CAGCATCGTTGATCGTGCCGGACTGGTTATCGTCAGCTGGTGTAAGAAGA
CGTATGAGAAATGTGGATCCAGCTCCTGGAAAGAGGATAAAAAGGTTCGT
GAGCAATGGTTACCATTCCATGGTAGGAATCCTGTAAGCGTTGAAGGACA
ACTTGATGTGGAGTTTGCTTTGGCTGATCAAGAAAGATTAAGGAAGGAAT
ACAGATATCGAATGATTAGAGGTTTGTCCAGCAAACGTTATTCATTGTGC
AGTCAATTGGAATAGGGCTCCTTTGTACTCCAAGATGGAAAACATGACAA
CACAAATAAGCAATAAAACATCTGAAAAAGAAGGAGGGATCCACCTACAT
TGTCTGTCTTGTTATTCTTCATCATGTTACATTTTCAAACAATGTCCTAT
GGTGTACTGTTCCAACCAATGTGGTGTGCAATACCACCAATGTAAAGAGA
AAGAGCATGTTCATGTGTGCAGGGAGCAGATTCGCCCATGTGTCAATAAG
CTTTACGGATGTCCATTTGAAGTGACCAGTGTTGAACTACTTACTCATTT
AGAGATTCGAATGTTTTCGACAGGTTTTTCACCCATTCGACATTGGATCT
ACAATGAAGTGCCGCATATCGGTCAACATCTGAAAACATGTGCTTTCTTC
AAACGAAGGAATCTTGGTGATGAGAAAATCAAATTACCAGTGATATCGTA
AGTGCTCGGAAACGTAGCAGTCTAAACAAGAAAGTCGGGCGGATCGAAAA
AACGCGAATCAAGGATCTGGAAAGACTTATCAGCGGTGGCAAAACAGAGA
AAGACATTCCGACAAGTGAAGCAAAAGACGAAGTAAACAATGTTTTCGTG
ACGTGCGATAAATTATTTCATGAAGAATTACACGAAGCTGGTAACAAAGA
CCATGTATCCAACACTAACATCCGTGACTCTTATTTTGACGTCCCTGATA
CGTACTACACCATAAACCGGAGCGGTGCTAGTACCAATTATAAGCAGCAG
ATCATCACTGGGTCGGAACCCGCTAGTAAGTCTTGGCGTGAGGACGACGA
AGATCCGCTCACGTTAGAGGAGATCGATAACCGAAGACAAGTTTATGATG
ATTTAAGCTGTAAAGCTTACGGTGTCGGGCTCGGATTGAATATTAACGTC
GAATGTTTGCCATCTTATTTCGATCAGTACCCACTCTACCGTTTCGCGTG
CGGCTCGTTGTTCCGTAGAGATCAATATAAATGGCATTGCCAAAATAGCC
ATGGTGATATCGGTTTCCATGTCAACGGCTGGCTCATGCAACGGTGCCCC
CTCGCACAGTATGGGTGCCCATACTCGCAATACCGCTTTCAACCTAAGGA
CTGCAGTGTCCGGTTTCTTAAAAACTTTTCATGCTTCACAGCGCCTTACA
ACGATTTGAACTTGACGAAAAAGACTAGAAATTCTGAGGATGTTCATATT
TTCGATTTGCCGAATGAACTTTTGATTTATTTATTGTTCTTCCTGGATAA
TTTATCTTTAAATTGTTTGGCGAAGACGTGTCATTTCTTTCAAGACTTGT
GTTGCAGCATCGTTGATCGTGCCGGACTGGTTATCGTCAGCTGGTGTAAG
AAGACGTATGAGAAATGTGGATCCAGCTCCTGGAAAGAGGATAAAAAGGT
TCGTGAGCAATGGTTACCATTCCATGGTAGGAATCCTGTAAGCGTTGAAG
GACAACTTGATGTGGAGTTTGCTTTGGCTGATCAAGAAAGATTAAGGAAG
GAATACAGATATCGAATGATTAGAGGTTTGTCCAGCAAACGTTATTCATT
GTGCAGTCAATTGGAATAGGGCTCCTTTGTACTCCAAGATGGAAAACATG
ACAACACAAATAAGCAATAAAACATCTGAAAAAGAAGGAGGGATCCACCT
ACATTGTCTGTCTTGTTATTCTTCATCATGTTACATTTTCAAACAATGTC
CTATGGTGTACTGTTCCAACCAATGTGGTGTGCAATACCACCAATGTAAA
GAGAAAGAGCATGTTCATGTGTGCAGGGAGCAGATTCGCCCATGTGTCAA
TAAGCTTTACGGATGTCCATTTGAAGTGACCAGTGTTGAACTACTTACTC
ATTTAGAGATTCGAATGTTTTCGACAGGTTTTTCACCCATTCGACATTGG
ATCTACAATGAAGTGCCGCATATCGGTCAACATCTGAAAACATGTGCTTT
CTTCAAACGAAGGAATCTTGGTGATGAGAAAATCAAATTACCAGTGATAT
CGTAAGTGCTCGGAAACGTAGCAGTCTAAACAAGAAAGTCGGGCGGATCG
AAAAAACGCGAATCAAGGATCTGGAAAGACTTATCAGCGGTGGCAAAACA
GAGAAAGACATTCCGACAAGTGAAGCAAAAGACGAAGTAAACAATGTTTT
CGTGACGTGCGATAAATTATTTCATGAAGAATTACACGAAGCTGGTAACA
AAGACCATGTATCCAACACTAACATCCGTGACTCTTATTTTGACGTCCCT
GATACGTACTACACCATAAACCGGAGCGGTGCTAGTACCAATTATAAGCA
GCAGATCATCACTGGGTCGGAACCCGCTAGTAAGTCTTGGCGTGAGGACG
ACGAAGATCCGCTCACGTTAGAGGAGATCGATAACCGAAGACAAGTTTAT
GATGATTTAAGCTGTAAAGCTTACGGTGTCGGGCTCGGATTGAATATTAA
CGTCGAATGTTTGCCATCTTATTTCGATCAGTACCCACTCTACCGTTTCG
CGTGCGGCTCGTTGTTCCGTAGAGATCAATATAAATGGCATTGCCAAAAT
AGCCATGGTGATATCGGTTTCCATGTCAACGGCTGGCTCATGCAACGGTG
CCCCCTCGCACAGTATGGGTGCCCATACTCGCAATACCGCTTTCAACCTA
AGGACTGCAGTGTCCGGTTTCTTAAAAACTTTTCATGCTTCACAGCGCCT
TACAACGATTTGAACTTGACGAAAAAGACTAGAAATTCTGAGGATGTTCA
TATTTTCGATTTGCCGAATGAACTTTTGATTTATTTATTGTTCTTCCTGG
ATAATTTATCTTTAAATTGTTTGGCGAAGACGTGTCATTTCTTTCAAGAC
TTGTGTTGCAGCATCGTTGATCGTGCCGGACTGGTTATCGTCAGCTGGTG
TAAGAAGACGTATGAGAAATGTGGATCCAGCTCCTGGAAAGAGGATAAAA
AGGTTCGTGAGCAATGGTTACCATTCCATGGTAGGAATCCTGTAAGCGTT
GAAGGACAACTTGATGTGGAGTTTGCTTTGGCTGATCAAGAAAGATTAAG
GAAGGAATACAGATATCGAATGATTAGAGGTTTGTCCAGCAAACGTTATT
CATTGTGCAGTCAATTGGAATAGGGCTCCTTTGTACTCCAAGATGGAAAA
CATGACAACACAAATAAGCAATAAAACATCTGAAAAAGAAGGAGGGATCC
ACCTACATTGTCTGTCTTGTTATTCTTCATCATGTTACATTTTCAAACAA
TGTCCTATGGTGTACTGTTCCAACCAATGTGGTGTGCAATACCACCAATG
TAAAGAGAAAGAGCATGTTCATGTGTGCAGGGAGCAGATTCGCCCATGTG
TCAATAAGCTTTACGGATGTCCATTTGAAGTGACCAGTGTTGAACTACTT
ACTCATTTAGAGATTCGAATGTTTTCGACAGGTTTTTCACCCATTCGACA
TTGGATCTACAATGAAGTGCCGCATATCGGTCAACATCTGAAAACATGTG
CTTTCTTCAAACGAAGGAATCTTGGTGATGAGAAAATCAAATTACCAGTG
ATATCGTAAGTGCTCGGAAACGTAGCAGTCTAAACAAGAAAGTCGGGCGG
ATCGAAAAAACGCGAATCAAGGATCTGGAAAGACTTATCAGCGGTGGCAA
AACAGAGAAAGACATTCCGACAAGTGAAGCAAAAGACGAAGTAAACAATG
TTTTCGTGACGTGCGATAAATTATTTCATGAAGAATTACACGAAGCTGGT
AACAAAGACCATGTATCCAACACTAACATCCGTGACTCTTATTTTGACGT
CCCTGATACGTACTACACCATAAACCGGAGCGGTGCTAGTACCAATTATA
AGCAGCAGATCATCACTGGGTCGGAACCCGCTAGTAAGTCTTGGCGTGAG
GACGACGAAGATCCGCTCACGTTAGAGGAGATCGATAACCGAAGACAAGT
TTATGATGATTTAAGCTGTAAAGCTTACGGTGTCGGGCTCGGATTGAATA
TTAACGTCGAATGTTTGCCATCTTATTTCGATCAGTACCCACTCTACCGT
TTCGCGTGCGGCTCGTTGTTCCGTAGAGATCAATATAAATGGCATTGCCA
AAATAGCCATGGTGATATCGGTTTCCATGTCAACGGCTGGCTCATGCAAC
GGTGCCCCCTCGCACAGTATGGGTGCCCATACTCGCAATACCGCTTTCAA
CCTAAGGACTGCAGTGTCCGGTTTCTTAAAAACTTTTCATGCTTCACAGC
GCCTTACAACGATTTGAACTTGACGAAAAAGACTAGAAATTCTGAGGATG
TTCATATTTTCGATTTGCCGAATGAACTTTTGATTTATTTATTGTTCTTC
CTGGATAATTTATCTTTAAATTGTTTGGCGAAGACGTGTCATTTCTTTCA
AGACTTGTGTTGCAGCATCGTTGATCGTGCCGGACTGGTTATCGTCAGCT
GGTGTAAGAAGACGTATGAGAAATGTGGATCCAGCTCCTGGAAAGAGGAT
AAAAAGGTTCGTGAGCAATGGTTACCATTCCATGGTAGGAATCCTGTAAG
CGTTGAAGGACAACTTGATGTGGAGTTTGCTTTGGCTGATCAAGAAAGAT
TAAGGAAGGAATACAGATATCGAATGATTAGAGGTTTGTCCAGCAAACGT
TATTCATTGTGCAGTCAATTGGAATAGGGCTCCTTTGTACTCCAAGATGG
AAAACATGACAACACAAATAAGCAATAAAACATCTGAAAAAGAAGGAGGG
ATCCACCTACATTGTCTGTCTTGTTATTCTTCATCATGTTACATTTTCAA
ACAATGTCCTATGGTGTACTGTTCCAACCAATGTGGTGTGCAATACCACC
AATGTAAAGAGAAAGAGCATGTTCATGTGTGCAGGGAGCAGATTCGCCCA
TGTGTCAATAAGCTTTACGGATGTCCATTTGAAGTGACCAGTGTTGAACT
ACTTACTCATTTAGAGATTCGAATGTTTTCGACAGGTTTTTCACCCATTC
GACATTGGATCTACAATGAAGTGCCGCATATCGGTCAACATCTGAAAACA
TGTGCTTTCTTCAAACGAAGGAATCTTGGTGATGAGAAAATCAAATTACC
AGTGATATCGTAAGTGCTCGGAAACGTAGCAGTCTAAACAAGAAAGTCGG
GCGGATCGAAAAAACGCGAATCAAGGATCTGGAAAGACTTATCAGCGGTG
GCAAAACAGAGAAAGACATTCCGACAAGTGAAGCAAAAGACGAAGTAAAC
AATGTTTTCGTGACGTGCGATAAATTATTTCATGAAGAATTACACGAAGC
TGGTAACAAAGACCATGTATCCAACACTAACATCCGTGACTCTTATTTTG
ACGTCCCTGATACGTACTACACCATAAACCGGAGCGGTGCTAGTACCAAT
TATAAGCAGCAGATCATCACTGGGTCGGAACCCGCTAGTAAGTCTTGGCG
TGAGGACGACGAAGATCCGCTCACGTTAGAGGAGATCGATAACCGAAGAC
AAGTTTATGATGATTTAAGCTGTAAAGCTTACGGTGTCGGGCTCGGATTG
AATATTAACGTCGAATGTTTGCCATCTTATTTCGATCAGTACCCACTCTA
CCGTTTCGCGTGCGGCTCGTTGTTCCGTAGAGATCAATATAAATGGCATT
GCCAAAATAGCCATGGTGATATCGGTTTCCATGTCAACGGCTGGCTCATG
CAACGGTGCCCCCTCGCACAGTATGGGTGCCCATACTCGCAATACCGCTT
TCAACCTAAGGACTGCAGTGTCCGGTTTCTTAAAAACTTTTCATGCTTCA
CAGCGCCTTACAACGATTTGAACTTGACGAAAAAGACTAGAAATTCTGAG
GATGTTCATATTTTCGATTTGCCGAATGAACTTTTGATTTATTTATTGTT
CTTCCTGGATAATTTATCTTTAAATTGTTTGGCGAAGACGTGTCATTTCT
TTCAAGACTTGTGTTGCAGCATCGTTGATCGTGCCGGACTGGTTATCGTC
AGCTGGTGTAAGAAGACGTATGAGAAATGTGGATCCAGCTCCTGGAAAGA
GGATAAAAAGGTTCGTGAGCAATGGTTACCATTCCATGGTAGGAATCCTG
TAAGCGTTGAAGGACAACTTGATGTGGAGTTTGCTTTGGCTGATCAAGAA
AGATTAAGGAAGGAATACAGATATCGAATGATTAGAGGTTTGTCCAGCAA
ACGTTATTCATTGTGCAGTCAATTGGAATAGGGCTCCTTTGTACTCCAAG
ATGGAAAACATGACAACACAAATAAGCAATAAAACATCTGAAAAAGAAGG
AGGGATCCACCTACATTGTCTGTCTTGTTATTCTTCATCATGTTACATTT
TCAAACAATGTCCTATGGTGTACTGTTCCAACCAATGTGGTGTGCAATAC
CACCAATGTAAAGAGAAAGAGCATGTTCATGTGTGCAGGGAGCAGATTCG
CCCATGTGTCAATAAGCTTTACGGATGTCCATTTGAAGTGACCAGTGTTG
AACTACTTACTCATTTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023416XLOC_023416Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038952-exon-sc0001975-1575043694:16282..16326TCONS_00038952-exon-sc0001975-1575043694:16282..16326Clytia hemisphaericaexon
TCONS_00038952-exon-sc0001975-1575043694:15644..15952TCONS_00038952-exon-sc0001975-1575043694:15644..15952Clytia hemisphaericaexon
TCONS_00038952-exon-sc0001975-1575043694:13256..13318TCONS_00038952-exon-sc0001975-1575043694:13256..13318Clytia hemisphaericaexon
TCONS_00038952-exon-sc0001975-1575043694:12659..12785TCONS_00038952-exon-sc0001975-1575043694:12659..12785Clytia hemisphaericaexon
TCONS_00038952-exon-sc0001975-1575043694:11429..12375TCONS_00038952-exon-sc0001975-1575043694:11429..12375Clytia hemisphaericaexon
TCONS_00038952-exon-sc0001975-1575043694:9977..10951TCONS_00038952-exon-sc0001975-1575043694:9977..10951Clytia hemisphaericaexon
TCONS_00038952-exon-sc0001975-1510915933:16282..16326TCONS_00038952-exon-sc0001975-1510915933:16282..16326Clytia hemisphaericaexon
TCONS_00038952-exon-sc0001975-1510915933:15644..15952TCONS_00038952-exon-sc0001975-1510915933:15644..15952Clytia hemisphaericaexon
TCONS_00038952-exon-sc0001975-1510915933:13256..13318TCONS_00038952-exon-sc0001975-1510915933:13256..13318Clytia hemisphaericaexon
TCONS_00038952-exon-sc0001975-1510915933:12659..12785TCONS_00038952-exon-sc0001975-1510915933:12659..12785Clytia hemisphaericaexon
TCONS_00038952-exon-sc0001975-1510915933:11429..12375TCONS_00038952-exon-sc0001975-1510915933:11429..12375Clytia hemisphaericaexon
TCONS_00038952-exon-sc0001975-1510915933:9977..10951TCONS_00038952-exon-sc0001975-1510915933:9977..10951Clytia hemisphaericaexon
TCONS_00038952-exon-sc0001975-1491911889:16282..16326TCONS_00038952-exon-sc0001975-1491911889:16282..16326Clytia hemisphaericaexon
TCONS_00038952-exon-sc0001975-1491911889:15644..15952TCONS_00038952-exon-sc0001975-1491911889:15644..15952Clytia hemisphaericaexon
TCONS_00038952-exon-sc0001975-1491911889:13256..13318TCONS_00038952-exon-sc0001975-1491911889:13256..13318Clytia hemisphaericaexon
TCONS_00038952-exon-sc0001975-1491911889:12659..12785TCONS_00038952-exon-sc0001975-1491911889:12659..12785Clytia hemisphaericaexon
TCONS_00038952-exon-sc0001975-1491911889:11429..12375TCONS_00038952-exon-sc0001975-1491911889:11429..12375Clytia hemisphaericaexon
TCONS_00038952-exon-sc0001975-1491911889:9977..10951TCONS_00038952-exon-sc0001975-1491911889:9977..10951Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038952-proteinTCONS_00038952-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001975supercontigsc0001975:9977..16326 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.1264	10.5735	4.35277	3.6123	15.8439	12.5246	10.6389	12.312	7.82179	12.5994	7.31981	5.54681	7.3904	6.42358	2.75309	3.38851	3.58414	3.57148	4.24193	8.26466	4.92385	5.10579	9.47699	8.7449	14.1798	14.1985	5.00684	3.59346	8.63652	7.80845
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR001810F-box_dom
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00038952 vs. Swiss-Prot (Human)
Match: FBX30 (F-box only protein 30 OS=Homo sapiens GN=FBXO30 PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.001e-27
Identity = 85/232 (36.64%), Postives = 128/232 (55.17%), Query Frame = 1 
Query:  973 LGLNINVECLPSYF-DQYPLYRFACGSLFRRDQYKWHCQNSHGDIGFHVNGWLMQRCPLAQYGCPYSQYRFQP-----KDCSVRFLKNFSCFTAPYNDLNLTKKTRNS----EDVHIFDXXXXXXXXXXXXXXXXXXXXXAKTCHFFQDLCCSIVDRAGLVIVSWCKKTYEKCGSSSWKEDKKIRMFSTGFSPIRHWIYNEVPHIGQHLKTCAF--FKRRNLGDEKIKLPVI 1632
            LGL++ +EC+  Y   Q  ++ F CG LFRR ++  H +N HGDI   +NGW+ QRCPLA YGC YSQ RF P     K    R L++F     P     L +  RN      + H+  LP E+L ++  FLD  SL  L+      +D+C S++   G+VI+ W K+ Y + G+SSW+  +K+  FST F  +  W + ++  +  HLK C++   ++R   +E I LP +
Sbjct:  499 LGLDLVLECVARYQPKQRSMFTFVCGQLFRRKEFSSHFKNVHGDIHAGLNGWMEQRCPLAYYGCTYSQRRFCPSIQGAKIIHDRHLRSFG--VQPCVSTVLVEPARNCVLGLHNDHLSSLPFEVLQHIAGFLDGFSLCQLSCVSKLMRDVCGSLLQSRGMVILQWGKRKYPE-GNSSWQIKEKVWRFSTAFCSVNEWKFADILSMADHLKKCSYNVVEKR---EEAIPLPCM 724
The following BLAST results are available for this feature:
BLAST of TCONS_00038952 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBX301.001e-2736.64F-box only protein 30 OS=Homo sapiens GN=FBXO30 PE... [more]
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