TCONS_00038952-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00038952-protein
Unique Name	TCONS_00038952-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	517

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00038952-protein ID=TCONS_00038952-protein|Name=TCONS_00038952-protein|organism=Clytia hemisphaerica|type=polypeptide|length=517bp
MENMTTQISNKTSEKEGGIHLHCLSCYSSSCYIFKQCPMVYCSNQCGVQY
HQCKEKEHVHVCREQIRPCVNKLYGCPFEVTSVELLTHLEVCPANVIHCA
VNWNRAPLYSKVREQWLPFHGRNPVSVEGQLDVEFALADQERLRKEYRYR
MIRGARKRSSLNKKVGRIEKTRIKDLERLISGGKTEKDIPTSEAKDEVNN
VFVTCDKLFHEELHEAGNKDHVSNTNIRDSYFDVPDTYYTINRSGASTNY
KQQIITGSEPASKSWREDDEDPLTLEEIDNRRQVYDDLSCKAYGVGLGLN
INVECLPSYFDQYPLYRFACGSLFRRDQYKWHCQNSHGDIGFHVNGWLMQ
RCPLAQYGCPYSQYRFQPKDCSVRFLKNFSCFTAPYNDLNLTKKTRNSED
VHIFDLPNELLIYLLFFLDNLSLNCLAKTCHFFQDLCCSIVDRAGLVIVS
WCKKTYEKCGSSSWKEDKKIRMFSTGFSPIRHWIYNEVPHIGQHLKTCAF
FKRRNLGDEKIKLPVIS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_023416	XLOC_023416	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00038952	TCONS_00038952	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001293	Znf_TRAF
IPR001810	F-box_dom
IPR008974	TRAF-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 34..77 e-value: 2.2E-4 score: 20.9 coord: 78..108 e-value: 7.3E-4 score: 19.2
IPR001293	Zinc finger, TRAF-type	PFAM	PF15965	zf-TRAF_2	coord: 20..107 e-value: 9.8E-25 score: 86.8
None	No IPR available	GENE3D	1.20.1280.50		coord: 391..486 e-value: 7.3E-4 score: 19.1
IPR001810	F-box domain	PFAM	PF15966	F-box_4	coord: 403..515 e-value: 4.3E-27 score: 94.2
IPR001810	F-box domain	SUPERFAMILY	81383	F-box domain	coord: 395..439
IPR008974	TRAF-like	SUPERFAMILY	49599	TRAF domain-like	coord: 39..102

Blast

[Close]

BLAST of TCONS_00038952-protein vs. Swiss-Prot (Human)
Match: FBX30 (F-box only protein 30 OS=Homo sapiens GN=FBXO30 PE=1 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 8.935e-37
Identity = 85/232 (36.64%), Postives = 128/232 (55.17%), Query Frame = 0

Query:  297 LGLNINVECLPSYF-DQYPLYRFACGSLFRRDQYKWHCQNSHGDIGFHVNGWLMQRCPLAQYGCPYSQYRFQP-----KDCSVRFLKNFSCFTAPYNDLNLTKKTRNS----EDVHIFDLPNELLIYLLFFLDNLSLNCLAKTCHFFQDLCCSIVDRAGLVIVSWCKKTYEKCGSSSWKEDKKIRMFSTGFSPIRHWIYNEVPHIGQHLKTCAF--FKRRNLGDEKIKLPVI 516
            LGL++ +EC+  Y   Q  ++ F CG LFRR ++  H +N HGDI   +NGW+ QRCPLA YGC YSQ RF P     K    R L++F     P     L +  RN      + H+  LP E+L ++  FLD  SL  L+      +D+C S++   G+VI+ W K+ Y + G+SSW+  +K+  FST F  +  W + ++  +  HLK C++   ++R   +E I LP +
Sbjct:  499 LGLDLVLECVARYQPKQRSMFTFVCGQLFRRKEFSSHFKNVHGDIHAGLNGWMEQRCPLAYYGCTYSQRRFCPSIQGAKIIHDRHLRSFG--VQPCVSTVLVEPARNCVLGLHNDHLSSLPFEVLQHIAGFLDGFSLCQLSCVSKLMRDVCGSLLQSRGMVILQWGKRKYPE-GNSSWQIKEKVWRFSTAFCSVNEWKFADILSMADHLKKCSYNVVEKR---EEAIPLPCM 724

HSP 2 Score: 88.1965 bits (217), Expect = 2.187e-18
Identity = 48/157 (30.57%), Postives = 76/157 (48.41%), Query Frame = 0

Query:   20 HLHCLSCYSSSCYIFKQ----CPMVYCSNQCGVQYHQCKEKEHVHVCREQIRPCVNKLYGCPFEVTSVELLTHLEVCPANVIHCAVNWNRAPLYSKVREQWLPFHGRNPVSVEGQLDVEFALADQERLRKEYRYRMIRGARKRSSLNKKVGRIEKTR 172
            H HC++C S  C    +    C ++ C   CG  +H CK  EH  +C  +  PC+N  +GCPF +   ++  HLE+CPA+V+ C + WNR P+    R+ +        V    QLD+  AL DQ  L +  +   +        ++K   ++ K R
Sbjct:    7 HSHCVNCVSRRCMTRPEPGISCDLIGCPLVCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPASVVCCTMEWNRWPVSYADRKSYENL--SRDVDEVAQLDMALALQDQRMLLESLKVATM--------MSKATDKVSKPR 153

The following BLAST results are available for this feature:

BLAST of TCONS_00038952-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00038952-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FBX30	8.935e-37	36.64	F-box only protein 30 OS=Homo sapiens GN=FBXO30 PE...	[more]

You are here

TCONS_00038952-protein (polypeptide) - C. hemisphaerica