TCONS_00040742 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040742
Unique NameTCONS_00040742
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040742 ID=TCONS_00040742|Name=TCONS_00040742|organism=Clytia hemisphaerica|type=transcript|length=400bp
aaaaatattttagtgacAGGCTGTGATTCAGGTTTTGGTTTGCAAACAGC
TTGGGAATTAAGTGAATCAAATTGTCATGTTTTTGCAAGTTGTCTAACTC
AAAATGGCGTGGACAGACTTCAAAATGATTCGAAGTTTCAAGGGATGGCT
TTTATCATGGATGTGACCAAAGAGGATGATGTTCAAAAAGCAAAGGAGAT
TATTGAACAGAATGGAGATCTCGATGGTATCGTCAACAATGCAGGGATTG
CATTTCCAGCTTTGTTTGAATGGCAATCTATCGAATTCATGAAGAAAACA
TTCGAAGTGAATTTCTGGGGAACGGTTCGTGTGGCCAAGGTTATGCTACC
ATTATTGAAGAAGTCACGTGGTCGAATTGTCAATTTGACGAGCATGACGG
Run BLAST on NCBI

protein sequence of TCONS_00040742-protein

>TCONS_00040742-protein ID=TCONS_00040742-protein|Name=TCONS_00040742-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
KNILVTGCDSGFGLQTAWELSESNCHVFASCLTQNGVDRLQNDSKFQGMA
FIMDVTKEDDVQKAKEIIEQNGDLDGIVNNAGIAFPALFEWQSIEFMKKT
FEVNFWGTVRVAKVMLPLLKKSRGRIVNLTSMT
Run BLAST on NCBI

transcript from alignment at sc0002544:1939..4700+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040742 ID=TCONS_00040742|Name=TCONS_00040742|organism=Clytia hemisphaerica|type=transcript|length=2762bp|location=Sequence derived from alignment at sc0002544:1939..4700+ (Clytia hemisphaerica)
aaaaatattttagtgacAGGCTGTGATTCAGGTTTTGGTTTGCAAACAGC
TTGGGAATTAAGTGAATCAAATTGTCATGTTTTTGCAAGTTGTCTAACTC
AAAATGGCGTGGACAGACTTCAAAATGATTCGAAGTTTCAAGGGATGGCT
TTTATCATGGATGTGACCAAAGAGGATGATGTTCAAAAAGCAAAGGAGAT
TATTGAACAGAATGGAGGTATTTATATTACTGTCTCGTTGTTCTATTTGG
TCGGCAAAAGTAAGGTTTCTTGGAATGATGATGGCCAAATTTTTCGACCT
GGTTTCAAGTTAGAACAAGATTcgcaaaaatgcgactaaatatttcctga
aaaatgaaggtcattattgacatatactagcaagtagctgtcgctaagaa
tgccccgcagagcttcctatcgaaatatccctaagtaagcaaaattacgc
atgtgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttg
acctacaatttgggggcctttataacccgacataaaaagtctgtcaaatt
atataaaacttgtttgttgtacttttataacatgaaagtactaccagaga
gatgattaatgttgaaattttgagcttttacgacgtgtcccagacccgtT
TGGGtcccagcccaatcagaaaatttgcctaagtttggagcaatataatt
tctattccAATTTGGACTTAAGTAGACATTTTTGGACCCGAtgttggaaa
aagttccaccggagctgtgaggcaggggtgttgttacattattcacatat
ttcaacacaaaatttcaacctacaaaataaaaacaactttcttgtctctt
ctttttgtcctttcttttacttttcctcatttgtagtacgatgaaattaa
tatatttattaattttttgttattaattttttgtcagcgtatatttctaa
agtatgaatttcacttagagaacaatgATTTCCGATGAATACCAAAATTC
CATTCTCAACAACCGAATCTTGTCACCTGAgggttaaaaagtgaaaaaat
ccaattttcagaataacaaaatgctctttagaatattgttttcgcataaa
acatttctaaaatttgctgttagaattaatccaattgaaaaaatatcaac
attttactattactagatttaaagccataaaaccaaacctacattctggg
ggctataacgaaaatgggaatcaacttcaaggaccaaaaaaattggtcta
tctatcaaaagtaatgaaactaacccctgggaaaggattttgggaattca
aaatttcgttgaaaatatttaatatcttttaaaatttcacctacattctc
ggggtcaggtgctgtaaatAAACATTTAATGATATGGCGATGCGTAGACt
ttgctatagtctaagacaaattactatctaagaaataagcccaaagcgga
agaaaattcgcaaacggatTTTTTTCACAGCCGTTAGAGTTTgcccgttt
cttcgaaactctcccgccgccGCCGAtcttttccgtataccgccataacg
acTGTAAACTCCGAGTATAATATTTTCCTGCCTTTACTATCACTTTAAca
gacgataacatcgtctaagcAATGACTATCGTTAATGGCAATGCAATTTA
TTTGTTCTGCTAACTTTCATCTCCTTCAGATCTCGATGGTATCGTCAACA
ATGCAGGGATTGCATTTCCAGCTTTGTTTGAATGGCAATCTATCGAATTC
ATGAAGAAAACATTCGAAGTGAATTTCTGGGGAACGGTTCGTGTGGCCAA
GGTTATGCTACCATTATTGAAGAAGTCACGTGGTCGAATTGTCAATTTGA
CGAGCATGACGG

Coding sequence (CDS) from alignment at sc0002544:1939..4700+

>TCONS_00040742 ID=TCONS_00040742|Name=TCONS_00040742|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at sc0002544:1939..4700+ (Clytia hemisphaerica)
aaaaatattttagtgacAGGCTGTGATTCAGGTTTTGGTTTGCAAACAGC
TTGGGAATTAAGTGAATCAAATTGTCATGTTTTTGCAAGTTGTCTAACTC
AAAATGGCGTGGACAGACTTCAAAATGATTCGAAGTTTCAAGGGATGGCT
TTTATCATGGATGTGACCAAAGAGGATGATGTTCAAAAAGCAAAGGAGAT
TATTGAACAGAATGGAGATCTCGATGGTATCGTCAACAATGCAGGGATTG
CATTTCCAGCTTTGTTTGAATGGCAATCTATCGAATTCATGAAGAAAACA
TTCGAAGTGAATTTCTGGGGAACGGTTCGTGTGGCCAAGGTTATGCTACC
ATTATTGAAGAAGTCACGTGGTCGAATTGTCAATTTGACGAGCATGACGa
aaaatattttagtgacAGGCTGTGATTCAGGTTTTGGTTTGCAAACAGCT
TGGGAATTAAGTGAATCAAATTGTCATGTTTTTGCAAGTTGTCTAACTCA
AAATGGCGTGGACAGACTTCAAAATGATTCGAAGTTTCAAGGGATGGCTT
TTATCATGGATGTGACCAAAGAGGATGATGTTCAAAAAGCAAAGGAGATT
ATTGAACAGAATGGAGATCTCGATGGTATCGTCAACAATGCAGGGATTGC
ATTTCCAGCTTTGTTTGAATGGCAATCTATCGAATTCATGAAGAAAACAT
TCGAAGTGAATTTCTGGGGAACGGTTCGTGTGGCCAAGGTTATGCTACCA
TTATTGAAGAAGTCACGTGGTCGAATTGTCAATTTGACGAGCATGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024823XLOC_024823Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040742-proteinTCONS_00040742-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040742-exon-sc0002544-1491911889:1939..2155TCONS_00040742-exon-sc0002544-1491911889:1939..2155Clytia hemisphaericaexon
TCONS_00040742-exon-sc0002544-1510915933:1939..2155TCONS_00040742-exon-sc0002544-1510915933:1939..2155Clytia hemisphaericaexon
TCONS_00040742-exon-sc0002544-1575043694:1939..2155TCONS_00040742-exon-sc0002544-1575043694:1939..2155Clytia hemisphaericaexon
TCONS_00040742-exon-sc0002544-1491911889:4518..4700TCONS_00040742-exon-sc0002544-1491911889:4518..4700Clytia hemisphaericaexon
TCONS_00040742-exon-sc0002544-1510915933:4518..4700TCONS_00040742-exon-sc0002544-1510915933:4518..4700Clytia hemisphaericaexon
TCONS_00040742-exon-sc0002544-1575043694:4518..4700TCONS_00040742-exon-sc0002544-1575043694:4518..4700Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002544supercontigsc0002544:1939..4700 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.185747	0	0	0	0.250491	0	1.43285	0.670706	0.782629	0.387765	1.31731	0.247413	1.72949	1.79609	0.210947	0	0.27888	0	0.394907	0.619863	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
Blast
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BLAST of TCONS_00040742 vs. Swiss-Prot (Human)
Match: H17B6 (17-beta-hydroxysteroid dehydrogenase type 6 OS=Homo sapiens GN=HSD17B6 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.104e-24
Identity = 53/136 (38.97%), Postives = 83/136 (61.03%), Query Frame = 1 
Query:    1 KNILVTGCDSGFGLQTAWELSESNCHVFASCLTQNGVDRLQNDSKFQGMAFIMDVTKEDDVQKAKEIIEQN-GD--LDGIVNNAGIAFP-ALFEWQSIEFMKKTFEVNFWGTVRVAKVMLPLLKKSRGRIVNLTSM 396
            K + +TGCDSGFG   A +L      V A+CLT+ G ++L+  +  +     +DVTK + +  A + ++++ GD  L G+VNNAGI  P  L EW + E      +VN  G ++V   MLPL++++RGRIVN++S+
Sbjct:   30 KYVFITGCDSGFGNLLARQLDARGLRVLAACLTEKGAEQLRGQTSDRLETVTLDVTKMESIAAATQWVKEHVGDRGLWGLVNNAGILTPITLCEWLNTEDSMNMLKVNLIGVIQVTLSMLPLVRRARGRIVNVSSI 165
The following BLAST results are available for this feature:
BLAST of TCONS_00040742 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H17B65.104e-2438.9717-beta-hydroxysteroid dehydrogenase type 6 OS=Hom... [more]
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