TCONS_00034923 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034923
Unique NameTCONS_00034923
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1199

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034923 ID=TCONS_00034923|Name=TCONS_00034923|organism=Clytia hemisphaerica|type=transcript|length=1199bp
aaagaaaattcaatttttattaaaGCTAGAAGTAAAATTGATAAAACTAT
GTTTCGGAAGCTTTCAAGGAGTTTGTTGATTATCGAAGTGTTTCTAATCC
CTTTCACCACTTCTGTATGGAGTCAACATTTGTGGAAACTTCAGTCCTGG
ACACCTTGCTCAAGAACATGCCAAGGAGGTTCAAAGAAAGCAGTATTCGG
TTGTTTTGATATTCTTCAAGAGAAGTTTGTCAATGAAAGATTTTGTACTG
GatacacaaaatttcatttagaGAAAGCCTGTAACTATGGAATTCATTGC
CAAGCTTCAATACTAAGACCACAAGCCTTGAAACTATACGAAGGTTATTG
GTTTAAATCCGAAGAGTTTGGACAATGCACAACAACGTGTGGACGGGGCG
TTAGATCAAGGCCTGTCATGTGTATTTCACGGACCGAACTGAAAATGCTA
GATGACTCTAAATGTCCGGCAGACGAGAAACCAATCGGATCGATATTATG
TGGAAATAAAGAATGTCCGGTAATAGCTGATTGGAAGATCGGAAATTGGA
GTGAGTGTTCATCGACTACCTGTGATGGAATACGAACGAGAACGGTGAAT
TGTCAAAAAGAGAGCGGGGAAGAAACCTTGCACCGCCACTGTGAAAAGAA
ACGCCCAAAGCCGATCCAAGAAAAAATCTGCAGTCCACCATGTGCTGTAT
GGGTGGTAGGCAGTTGGGGAAAGTGTCGTTATAATGCAAAGTTGAAGAAA
TGTTCGGACGCAAAACAAACGCGTTGTGTGACATGTGTGGACAGGCGTAC
GATGCAGGTGTCAGATCAATGCTCGTTGGATCAAAAACCatctttaaaaa
gaaattgtaCATATAAAGATTGTTGATCACTTGTAAATAAACTCATCCAG
TATTTCTcagcattattttcaaatttcaaatatcATGACGAAATGTTCTA
TACGGAAACACCCAAAACAGCCCGGACGTTTGCCattagttttattgttt
aaattcaatatTAATGGCAAATTCTCGTTGTTTTTTGGGTGATTTCCTGT
agaacattacgtcatgaatatcacgaacGAATTAACTGggatttaaaata
tattttatgtcTAACGATGTCTTTTAGTCCACGAGGTCATAAACAATACC
ATGtgtgtgtcacagacccggtgggacacCCAAACCACTCGAAAATTAG
Run BLAST on NCBI

protein sequence of TCONS_00034923-protein

>TCONS_00034923-protein ID=TCONS_00034923-protein|Name=TCONS_00034923-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
KENSIFIKARSKIDKTMFRKLSRSLLIIEVFLIPFTTSVWSQHLWKLQSW
TPCSRTCQGGSKKAVFGCFDILQEKFVNERFCTGYTKFHLEKACNYGIHC
QASILRPQALKLYEGYWFKSEEFGQCTTTCGRGVRSRPVMCISRTELKML
DDSKCPADEKPIGSILCGNKECPVIADWKIGNWSECSSTTCDGIRTRTVN
CQKESGEETLHRHCEKKRPKPIQEKICSPPCAVWVVGSWGKCRYNAKLKK
CSDAKQTRCVTCVDRRTMQVSDQCSLDQKPSLKRNCTYKDC
Run BLAST on NCBI

transcript from alignment at sc0001231:52498..55928-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034923 ID=TCONS_00034923|Name=TCONS_00034923|organism=Clytia hemisphaerica|type=transcript|length=3431bp|location=Sequence derived from alignment at sc0001231:52498..55928- (Clytia hemisphaerica)
AAAGAAAATTCAATTTTTATTAAAGCTAGAAGTAAAATTGATAAAACTAT
GTTTCGGAAGGTAAAAGGTTTGATTTATTCTACTTTTGAAAATATTTCAG
CAAGAGAGACCAGGGTAGCGCTGGGTAGACCGACCCATAATAGGGCAGTA
TTCAGACCCCTAAAAGATTCTATTCTATTGGAAGTTCTACTACCCCTTTA
AGACGTGAAGGACTTACAATTTGCTTTGTAAATAAATTTAATTTTGAAAG
TCAATGTGATGGATCTAGCGCACACGCACTCACTTGCTAACTTGCTTTCA
AAGGTAGAATTTTAAAAAAGGAAAAAAAAACCTTAACGAACTTTTCCTAA
GAAATTATCAAGTCTGATCGACCCAGAGGCTTTTAATAAGGTTGCCATTT
CCCCAATCTGTTACAACTTGGGCTCACAGAATTGATATTTACATATTTCT
AGCTTTCAAGGAGTTTGTTGATTATCGAAGTGTTTCTAATCCCTTTCACC
ACTTCTGTATGGAGTCAACATTTGTGGAAACTTCAGTCCTGGACACCTTG
CTCAAGAACATGCCAAGGAGGTCAGTAAAATATGTTCAGAAATATCTCAT
TTGGAACAGCAAGTACCTAAGAAATCTTAAAATTCTATACCTTTAAAATA
AAGTCATTAGGTAAATCGAGGCTAGACATATTGTATACCTTTGGTTAAAG
GCAAATTAAATCGAAGTTTGAAGAATATTAACGAGCACCTCGCAAAAAAC
CGGAATTTTCGTCTCGTTTCTTGGTGAATTCAACTTTGATGATTTTCTAG
AAAACGAAGCCTTTCAAGTGTCCTGACGCAAACTCGATTTTCCCTACTGC
AAGAGCTTCAAAAGTTTAAAGTAACGTCAAAACATCTAATGTTTTGAGTC
CGAAAGCCTGAGCTAAAAACATTAGAAAAAGTCGCAAATTGGAAGACTTG
ATTGGGTAGAAAAGACGGAGAGTGGTCTAATTCAGGGCTAGAAAAATTTC
TACTCAGCCTGCTTTTTTGTCCGAAAAGTCAAGTACACAGTTTCACAATC
TTTGTAATTACTCACTACTCCACCCCCCCCCGCTAATTAATTTTTGGGAA
AATGGCTATTAGGTACCCGAGAGTAACTCGTATTTTGAGTACATAAGAAA
CGTGAGAGCAACGATAAATGCAAGAGGTCTTGAAAAATGAATAAAAATTC
ACTCATCTCTGATTTCCAGGTTCAAAGAAAGCAGTATTCGGTTGTTTTGA
TATTCTTCAAGAGAAGTTTGTCAATGAAAGATTTTGTACTGGATACACAA
AATTTCATTTAGAGAAAGCCTGTAACTATGGAATTCATTGCCAAGCTTCA
ATACTAAGGTAACTTCGAGGAAGCGAATTTTCACTTTCTTATCTTATAAT
GAAAAGTTTTTGATATGCTCAAAATATGAATAACTTAAATAGTAGCCATT
GACCACCATGAGCCAAATCTACTTCACTTAAAATTTATCGTTATGATCTT
TGACTTTAACTATGTACTGAGCTAGCCTAGAAATCTAAGCTAGTTTGAAT
CAGTCACTAGAAAACTAAATTTCTAGAATCCGAGGCTAACATTCGTGATA
TCAATGAAGTATAAGCCCGAAGGGCTAGGGGTCAATCTCTAACCTTTCTC
TGGCAAAAAAATGAAGCCTTAAAATATGCGCCGAATTTTTGACCACGGAT
TGAATCTAGCGATTCCTTTGTTTTCGAGTGGTATTTTTTTCGAAATTTAA
GCACAATTTTTAGTTTAAATCTGTCATTTGTGTAAAAACCAGGCGCACCG
CGCTAGGCCACGCAACTTCAGCAGGATTTGGTAGGCTTCAAATTCTACCA
AGGAGATTCGATTCTAGCCCTTTGGGCTTATACTTCAATGCGTGATATGA
AAGAATCTTTAAAGCACCGATATTACCGATAACTCTTTACTGCCGTAAGC
CGCATCTTAGCTTTAATCTTATGTTTTAGTCAATAGTTAGGCTTTGATAT
TTGATTTCCTTCCTCCATAGACCACAAGCCTTGAAACTATACGAAGGTTA
TTGGTTTAAATCCGAAGAGTTTGGACAATGCACAACAACGTGTGGACGGG
GCGTTAGATCAAGGCCTGTCATGTGTATTTCACGGACCGAACTGAAAATG
CTAGATGACTCTAAATGTCCGGCAGACGAGAAACCAATCGGATCGATATT
ATGTGGAAATAAAGAATGTCCGGTAATAGCTGATTGGAAGATCGGAAATT
GGAGTGAGGTAATTGATTGAGCTTCGCTTTTGTACGAAAGTATTTAACTG
TATGTTTTGTAGGTGAGTAAAGTAAATCATGTATTATTCTTTAGAGATTC
TTTATGCCCCACATTTTTTATTTTACTGGATGTATGTGGTAAAAATCTTC
TCGTGAGAAAAATCATAAAAAAGCGGGCTCAGGGACTGAGGACTATCTTT
CCCCTTTAAAAGTGACTTTTGAAGATCAAAACCTTATACACAACCTTTAC
CCTTTCTTTAGTGTTCATCGACTACCTGTGATGGAATACGAACGAGAACG
GTGAATTGTCAAAAAGAGAGCGGGGAAGAAACCTTGCACCGCCACTGTGA
AAAGAAACGCCCAAAGCCGATCCAAGAAAAAATCTGCAGTCCACCATGTG
CTGTATGGGTGGTAGGCAGTTGGGGAAAGGTAAGCAAGCACAGTAGAGTC
TCCAGAACTCGAAACTCTATAGCTCGAATATGTATCCTTAACTCGAATAA
CTTCCAGGTTTATCAGCGGATTTAAGATAGCAAACCCTATAAACAAGTTT
TATTTTAACTCGAACAAATTTCCCGCGTGTTTTCGAATCGTGAAGACTTT
AATACAAAGAGACGCAACATTTTTGTAGAGGAAAGCAAAATTTCAGGGAA
TTTTATATGATCAAGTTGGAAGAATAAATAAATGATCATACCTCATTTTC
CTTAGTGTCGTTATAATGCAAAGTTGAAGAAATGTTCGGACGCAAAACAA
ACGCGTTGTGTGACATGTGTGGACAGGCGTACGATGCAGGTGTCAGATCA
ATGCTCGTTGGATCAAAAACCATCTTTAAAAAGAAATTGTACATATAAAG
ATTGTTGATCACTTGTAAATAAACTCATCCAGTATTTCTCAGCATTATTT
TCAAATTTCAAATATCATGACGAAATGTTCTATACGGAAACACCCAAAAC
AGCCCGGACGTTTGCCATTAGTTTTATTGTTTAAATTCAATATTAATGGC
AAATTCTCGTTGTTTTTTGGGTGATTTCCTGTAGAACATTACGTCATGAA
TATCACGAACGAATTAACTGGGATTTAAAATATATTTTATGTCTAACGAT
GTCTTTTAGTCCACGAGGTCATAAACAATACCATGTGTGTGTCACAGACC
CGGTGGGACACCCAAACCACTCGAAAATTAG

Coding sequence (CDS) from alignment at sc0001231:52498..55928-

>TCONS_00034923 ID=TCONS_00034923|Name=TCONS_00034923|organism=Clytia hemisphaerica|type=CDS|length=5256bp|location=Sequence derived from alignment at sc0001231:52498..55928- (Clytia hemisphaerica)
TGTCGTTATAATGCAAAGTTGAAGAAATGTTCGGACGCAAAACAAACGCG
TTGTGTGACATGTGTGGACAGGCGTACGATGCAGGTGTCAGATCAATGCT
CGTTGGATCAAAAACCATCTTTAAAAAGAAATTGTACATATAAAGATTGT
TGATGTTCATCGACTACCTGTGATGGAATACGAACGAGAACGGTGAATTG
TCAAAAAGAGAGCGGGGAAGAAACCTTGCACCGCCACTGTGAAAAGAAAC
GCCCAAAGCCGATCCAAGAAAAAATCTGCAGTCCACCATGTGCTGTATGG
GTGGTAGGCAGTTGGGGAAAGACCACAAGCCTTGAAACTATACGAAGGTT
ATTGGTTTAAATCCGAAGAGTTTGGACAATGCACAACAACGTGTGGACGG
GGCGTTAGATCAAGGCCTGTCATGTGTATTTCACGGACCGAACTGAAAAT
GCTAGATGACTCTAAATGTCCGGCAGACGAGAAACCAATCGGATCGATAT
TATGTGGAAATAAAGAATGTCCGGTAATAGCTGATTGGAAGATCGGAAAT
TGGAGTGAGGTTCAAAGAAAGCAGTATTCGGTTGTTTTGATATTCTTCAA
GAGAAGTTTGTCAATGAAAGATTTTGTACTGGATACACAAAATTTCATTT
AGAGAAAGCCTGTAACTATGGAATTCATTGCCAAGCTTCAATACTAAGCT
TTCAAGGAGTTTGTTGATTATCGAAGTGTTTCTAATCCCTTTCACCACTT
CTGTATGGAGTCAACATTTGTGGAAACTTCAGTCCTGGACACCTTGCTCA
AGAACATGCCAAGGAGAAAGAAAATTCAATTTTTATTAAAGCTAGAAGTA
AAATTGATAAAACTATGTTTCGGAAGTGTCGTTATAATGCAAAGTTGAAG
AAATGTTCGGACGCAAAACAAACGCGTTGTGTGACATGTGTGGACAGGCG
TACGATGCAGGTGTCAGATCAATGCTCGTTGGATCAAAAACCATCTTTAA
AAAGAAATTGTACATATAAAGATTGTTGATGTTCATCGACTACCTGTGAT
GGAATACGAACGAGAACGGTGAATTGTCAAAAAGAGAGCGGGGAAGAAAC
CTTGCACCGCCACTGTGAAAAGAAACGCCCAAAGCCGATCCAAGAAAAAA
TCTGCAGTCCACCATGTGCTGTATGGGTGGTAGGCAGTTGGGGAAAGACC
ACAAGCCTTGAAACTATACGAAGGTTATTGGTTTAAATCCGAAGAGTTTG
GACAATGCACAACAACGTGTGGACGGGGCGTTAGATCAAGGCCTGTCATG
TGTATTTCACGGACCGAACTGAAAATGCTAGATGACTCTAAATGTCCGGC
AGACGAGAAACCAATCGGATCGATATTATGTGGAAATAAAGAATGTCCGG
TAATAGCTGATTGGAAGATCGGAAATTGGAGTGAGGTTCAAAGAAAGCAG
TATTCGGTTGTTTTGATATTCTTCAAGAGAAGTTTGTCAATGAAAGATTT
TGTACTGGATACACAAAATTTCATTTAGAGAAAGCCTGTAACTATGGAAT
TCATTGCCAAGCTTCAATACTAAGCTTTCAAGGAGTTTGTTGATTATCGA
AGTGTTTCTAATCCCTTTCACCACTTCTGTATGGAGTCAACATTTGTGGA
AACTTCAGTCCTGGACACCTTGCTCAAGAACATGCCAAGGAGAAAGAAAA
TTCAATTTTTATTAAAGCTAGAAGTAAAATTGATAAAACTATGTTTCGGA
AGTGTCGTTATAATGCAAAGTTGAAGAAATGTTCGGACGCAAAACAAACG
CGTTGTGTGACATGTGTGGACAGGCGTACGATGCAGGTGTCAGATCAATG
CTCGTTGGATCAAAAACCATCTTTAAAAAGAAATTGTACATATAAAGATT
GTTGATGTTCATCGACTACCTGTGATGGAATACGAACGAGAACGGTGAAT
TGTCAAAAAGAGAGCGGGGAAGAAACCTTGCACCGCCACTGTGAAAAGAA
ACGCCCAAAGCCGATCCAAGAAAAAATCTGCAGTCCACCATGTGCTGTAT
GGGTGGTAGGCAGTTGGGGAAAGACCACAAGCCTTGAAACTATACGAAGG
TTATTGGTTTAAATCCGAAGAGTTTGGACAATGCACAACAACGTGTGGAC
GGGGCGTTAGATCAAGGCCTGTCATGTGTATTTCACGGACCGAACTGAAA
ATGCTAGATGACTCTAAATGTCCGGCAGACGAGAAACCAATCGGATCGAT
ATTATGTGGAAATAAAGAATGTCCGGTAATAGCTGATTGGAAGATCGGAA
ATTGGAGTGAGGTTCAAAGAAAGCAGTATTCGGTTGTTTTGATATTCTTC
AAGAGAAGTTTGTCAATGAAAGATTTTGTACTGGATACACAAAATTTCAT
TTAGAGAAAGCCTGTAACTATGGAATTCATTGCCAAGCTTCAATACTAAG
CTTTCAAGGAGTTTGTTGATTATCGAAGTGTTTCTAATCCCTTTCACCAC
TTCTGTATGGAGTCAACATTTGTGGAAACTTCAGTCCTGGACACCTTGCT
CAAGAACATGCCAAGGAGAAAGAAAATTCAATTTTTATTAAAGCTAGAAG
TAAAATTGATAAAACTATGTTTCGGAAGTGTCGTTATAATGCAAAGTTGA
AGAAATGTTCGGACGCAAAACAAACGCGTTGTGTGACATGTGTGGACAGG
CGTACGATGCAGGTGTCAGATCAATGCTCGTTGGATCAAAAACCATCTTT
AAAAAGAAATTGTACATATAAAGATTGTTGATGTTCATCGACTACCTGTG
ATGGAATACGAACGAGAACGGTGAATTGTCAAAAAGAGAGCGGGGAAGAA
ACCTTGCACCGCCACTGTGAAAAGAAACGCCCAAAGCCGATCCAAGAAAA
AATCTGCAGTCCACCATGTGCTGTATGGGTGGTAGGCAGTTGGGGAAAGA
CCACAAGCCTTGAAACTATACGAAGGTTATTGGTTTAAATCCGAAGAGTT
TGGACAATGCACAACAACGTGTGGACGGGGCGTTAGATCAAGGCCTGTCA
TGTGTATTTCACGGACCGAACTGAAAATGCTAGATGACTCTAAATGTCCG
GCAGACGAGAAACCAATCGGATCGATATTATGTGGAAATAAAGAATGTCC
GGTAATAGCTGATTGGAAGATCGGAAATTGGAGTGAGGTTCAAAGAAAGC
AGTATTCGGTTGTTTTGATATTCTTCAAGAGAAGTTTGTCAATGAAAGAT
TTTGTACTGGATACACAAAATTTCATTTAGAGAAAGCCTGTAACTATGGA
ATTCATTGCCAAGCTTCAATACTAAGCTTTCAAGGAGTTTGTTGATTATC
GAAGTGTTTCTAATCCCTTTCACCACTTCTGTATGGAGTCAACATTTGTG
GAAACTTCAGTCCTGGACACCTTGCTCAAGAACATGCCAAGGAGAAAGAA
AATTCAATTTTTATTAAAGCTAGAAGTAAAATTGATAAAACTATGTTTCG
GAAGTGTCGTTATAATGCAAAGTTGAAGAAATGTTCGGACGCAAAACAAA
CGCGTTGTGTGACATGTGTGGACAGGCGTACGATGCAGGTGTCAGATCAA
TGCTCGTTGGATCAAAAACCATCTTTAAAAAGAAATTGTACATATAAAGA
TTGTTGATGTTCATCGACTACCTGTGATGGAATACGAACGAGAACGGTGA
ATTGTCAAAAAGAGAGCGGGGAAGAAACCTTGCACCGCCACTGTGAAAAG
AAACGCCCAAAGCCGATCCAAGAAAAAATCTGCAGTCCACCATGTGCTGT
ATGGGTGGTAGGCAGTTGGGGAAAGACCACAAGCCTTGAAACTATACGAA
GGTTATTGGTTTAAATCCGAAGAGTTTGGACAATGCACAACAACGTGTGG
ACGGGGCGTTAGATCAAGGCCTGTCATGTGTATTTCACGGACCGAACTGA
AAATGCTAGATGACTCTAAATGTCCGGCAGACGAGAAACCAATCGGATCG
ATATTATGTGGAAATAAAGAATGTCCGGTAATAGCTGATTGGAAGATCGG
AAATTGGAGTGAGGTTCAAAGAAAGCAGTATTCGGTTGTTTTGATATTCT
TCAAGAGAAGTTTGTCAATGAAAGATTTTGTACTGGATACACAAAATTTC
ATTTAGAGAAAGCCTGTAACTATGGAATTCATTGCCAAGCTTCAATACTA
AGCTTTCAAGGAGTTTGTTGATTATCGAAGTGTTTCTAATCCCTTTCACC
ACTTCTGTATGGAGTCAACATTTGTGGAAACTTCAGTCCTGGACACCTTG
CTCAAGAACATGCCAAGGAGAAAGAAAATTCAATTTTTATTAAAGCTAGA
AGTAAAATTGATAAAACTATGTTTCGGAAGTGTCGTTATAATGCAAAGTT
GAAGAAATGTTCGGACGCAAAACAAACGCGTTGTGTGACATGTGTGGACA
GGCGTACGATGCAGGTGTCAGATCAATGCTCGTTGGATCAAAAACCATCT
TTAAAAAGAAATTGTACATATAAAGATTGTTGATGTTCATCGACTACCTG
TGATGGAATACGAACGAGAACGGTGAATTGTCAAAAAGAGAGCGGGGAAG
AAACCTTGCACCGCCACTGTGAAAAGAAACGCCCAAAGCCGATCCAAGAA
AAAATCTGCAGTCCACCATGTGCTGTATGGGTGGTAGGCAGTTGGGGAAA
GACCACAAGCCTTGAAACTATACGAAGGTTATTGGTTTAAATCCGAAGAG
TTTGGACAATGCACAACAACGTGTGGACGGGGCGTTAGATCAAGGCCTGT
CATGTGTATTTCACGGACCGAACTGAAAATGCTAGATGACTCTAAATGTC
CGGCAGACGAGAAACCAATCGGATCGATATTATGTGGAAATAAAGAATGT
CCGGTAATAGCTGATTGGAAGATCGGAAATTGGAGTGAGGTTCAAAGAAA
GCAGTATTCGGTTGTTTTGATATTCTTCAAGAGAAGTTTGTCAATGAAAG
ATTTTGTACTGGATACACAAAATTTCATTTAGAGAAAGCCTGTAACTATG
GAATTCATTGCCAAGCTTCAATACTAAGCTTTCAAGGAGTTTGTTGATTA
TCGAAGTGTTTCTAATCCCTTTCACCACTTCTGTATGGAGTCAACATTTG
TGGAAACTTCAGTCCTGGACACCTTGCTCAAGAACATGCCAAGGAGAAAG
AAAATTCAATTTTTATTAAAGCTAGAAGTAAAATTGATAAAACTATGTTT
CGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020323XLOC_020323Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034923-proteinTCONS_00034923-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034923-exon-sc0001231-1575043694:55869..55928TCONS_00034923-exon-sc0001231-1575043694:55869..55928Clytia hemisphaericaexon
TCONS_00034923-exon-sc0001231-1575043694:55359..55476TCONS_00034923-exon-sc0001231-1575043694:55359..55476Clytia hemisphaericaexon
TCONS_00034923-exon-sc0001231-1575043694:54571..54709TCONS_00034923-exon-sc0001231-1575043694:54571..54709Clytia hemisphaericaexon
TCONS_00034923-exon-sc0001231-1575043694:53671..53908TCONS_00034923-exon-sc0001231-1575043694:53671..53908Clytia hemisphaericaexon
TCONS_00034923-exon-sc0001231-1575043694:53250..53417TCONS_00034923-exon-sc0001231-1575043694:53250..53417Clytia hemisphaericaexon
TCONS_00034923-exon-sc0001231-1575043694:52498..52973TCONS_00034923-exon-sc0001231-1575043694:52498..52973Clytia hemisphaericaexon
TCONS_00034923-exon-sc0001231-1510915933:55869..55928TCONS_00034923-exon-sc0001231-1510915933:55869..55928Clytia hemisphaericaexon
TCONS_00034923-exon-sc0001231-1510915933:55359..55476TCONS_00034923-exon-sc0001231-1510915933:55359..55476Clytia hemisphaericaexon
TCONS_00034923-exon-sc0001231-1510915933:54571..54709TCONS_00034923-exon-sc0001231-1510915933:54571..54709Clytia hemisphaericaexon
TCONS_00034923-exon-sc0001231-1510915933:53671..53908TCONS_00034923-exon-sc0001231-1510915933:53671..53908Clytia hemisphaericaexon
TCONS_00034923-exon-sc0001231-1510915933:53250..53417TCONS_00034923-exon-sc0001231-1510915933:53250..53417Clytia hemisphaericaexon
TCONS_00034923-exon-sc0001231-1510915933:52498..52973TCONS_00034923-exon-sc0001231-1510915933:52498..52973Clytia hemisphaericaexon
TCONS_00034923-exon-sc0001231-1491911889:55869..55928TCONS_00034923-exon-sc0001231-1491911889:55869..55928Clytia hemisphaericaexon
TCONS_00034923-exon-sc0001231-1491911889:55359..55476TCONS_00034923-exon-sc0001231-1491911889:55359..55476Clytia hemisphaericaexon
TCONS_00034923-exon-sc0001231-1491911889:54571..54709TCONS_00034923-exon-sc0001231-1491911889:54571..54709Clytia hemisphaericaexon
TCONS_00034923-exon-sc0001231-1491911889:53671..53908TCONS_00034923-exon-sc0001231-1491911889:53671..53908Clytia hemisphaericaexon
TCONS_00034923-exon-sc0001231-1491911889:53250..53417TCONS_00034923-exon-sc0001231-1491911889:53250..53417Clytia hemisphaericaexon
TCONS_00034923-exon-sc0001231-1491911889:52498..52973TCONS_00034923-exon-sc0001231-1491911889:52498..52973Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001231supercontigsc0001231:52498..55928 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.367642	0.826464	0.290454	0.144073	0	0.0495026	0	0.088046	9.48101	11.9141	0	0.11959	27.57	28.2885	19.843	33.307	12.5421	11.8154	2.37303	2.21048	0.560851	0.244584
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
Blast
[Close]
BLAST of TCONS_00034923 vs. Swiss-Prot (Human)
Match: ATS10 (A disintegrin and metalloproteinase with thrombospondin motifs 10 OS=Homo sapiens GN=ADAMTS10 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.425e-22
Identity = 82/292 (28.08%), Postives = 119/292 (40.75%), Query Frame = 1 
Query:   13 IFIKARSKIDKTMFRKLSRSLLIIEVFLIPFTTSVWSQHLWKLQSWTPCSRTCQGGSKKAVFGCFDILQEKFVNERFCTGYTKF-HLEKACNYGIHCQASILRPQALKLYEGYWFKSEEFGQCTTTCGRGVRSRPVMC---ISRTELKMLDDSKCPADEKPIGSILCGNKECPVIADWKIGNWSECSSTTCDGIRTRTVNCQKESGEETL-HRHCE--KKRPKPIQEKICSPPCAVWVVGSWGKCRYNAKLKKCSDAKQTRCVTCVDRRTMQVSDQCSLDQKPSLKRNCTYK 867
            + + AR+++    +R           F  P        + W    WT CS  C GGS+     C + L    V   +C+ ++K    ++ACN           P       G W        C+ +C  GVRSR V+C   +S  E K LDDS CP    P+    C    CP   +W   +WSEC+ +   G+R R V C+      TL   HC    K P  ++  +   P A WV G WG+C       +C   ++ R V C    T Q S +C+   +P   + C  K
Sbjct:  800 VMVLARTELPALRYR-----------FNAPIARDSLPPYSWHYAPWTKCSAQCAGGSQVQAVECRNQLDSSAVAPHYCSAHSKLPKRQRACN---------TEPCPPDWVVGNW------SLCSRSCDAGVRSRSVVCQRRVSAAEEKALDDSACPQPRPPVLEA-CHGPTCP--PEWAALDWSECTPSCGPGLRHRVVLCKSADHRATLPPAHCSPAAKPPATMRCNLRRCPPARWVAGEWGECS-----AQCGVGQRQRSVRCTS-HTGQASHECTEALRPPTTQQCEAK 1056
The following BLAST results are available for this feature:
BLAST of TCONS_00034923 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ATS101.425e-2228.08A disintegrin and metalloproteinase with thrombosp... [more]
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