TCONS_00034923-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00034923-protein
Unique Name	TCONS_00034923-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	291

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00034923-protein ID=TCONS_00034923-protein|Name=TCONS_00034923-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
KENSIFIKARSKIDKTMFRKLSRSLLIIEVFLIPFTTSVWSQHLWKLQSW
TPCSRTCQGGSKKAVFGCFDILQEKFVNERFCTGYTKFHLEKACNYGIHC
QASILRPQALKLYEGYWFKSEEFGQCTTTCGRGVRSRPVMCISRTELKML
DDSKCPADEKPIGSILCGNKECPVIADWKIGNWSECSSTTCDGIRTRTVN
CQKESGEETLHRHCEKKRPKPIQEKICSPPCAVWVVGSWGKCRYNAKLKK
CSDAKQTRCVTCVDRRTMQVSDQCSLDQKPSLKRNCTYKDC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_020323	XLOC_020323	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00034923	TCONS_00034923	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000884	TSP1_rpt

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000884	Thrombospondin type-1 (TSP1) repeat	SMART	SM00209	TSP1_2	coord: 44..101 e-value: 0.77 score: 10.3 coord: 117..173 e-value: 0.026 score: 23.4 coord: 177..232 e-value: 0.063 score: 19.9
IPR000884	Thrombospondin type-1 (TSP1) repeat	PFAM	PF00090	TSP_1	coord: 121..172 e-value: 0.0014 score: 18.7 coord: 181..214 e-value: 0.045 score: 13.9 coord: 49..62 e-value: 0.11 score: 12.6
IPR000884	Thrombospondin type-1 (TSP1) repeat	GENE3D	2.20.100.10		coord: 40..100 e-value: 3.3E-6 score: 26.9 coord: 175..230 e-value: 4.3E-8 score: 33.0 coord: 231..291 e-value: 7.0E-5 score: 22.7 coord: 113..173 e-value: 7.2E-11 score: 41.8
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 41..101 score: 8.025
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 114..173 score: 9.202
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 174..232 score: 8.957
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 113..172
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 43..97
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 178..228

Blast

[Close]

BLAST of TCONS_00034923-protein vs. Swiss-Prot (Human)
Match: ATS10 (A disintegrin and metalloproteinase with thrombospondin motifs 10 OS=Homo sapiens GN=ADAMTS10 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.595e-23
Identity = 82/292 (28.08%), Postives = 119/292 (40.75%), Query Frame = 0

Query:    5 IFIKARSKIDKTMFRKLSRSLLIIEVFLIPFTTSVWSQHLWKLQSWTPCSRTCQGGSKKAVFGCFDILQEKFVNERFCTGYTKF-HLEKACNYGIHCQASILRPQALKLYEGYWFKSEEFGQCTTTCGRGVRSRPVMC---ISRTELKMLDDSKCPADEKPIGSILCGNKECPVIADWKIGNWSECSSTTCDGIRTRTVNCQKESGEETL-HRHCE--KKRPKPIQEKICSPPCAVWVVGSWGKCRYNAKLKKCSDAKQTRCVTCVDRRTMQVSDQCSLDQKPSLKRNCTYK 289
            + + AR+++    +R           F  P        + W    WT CS  C GGS+     C + L    V   +C+ ++K    ++ACN           P       G W        C+ +C  GVRSR V+C   +S  E K LDDS CP    P+    C    CP   +W   +WSEC+ +   G+R R V C+      TL   HC    K P  ++  +   P A WV G WG+C       +C   ++ R V C    T Q S +C+   +P   + C  K
Sbjct:  800 VMVLARTELPALRYR-----------FNAPIARDSLPPYSWHYAPWTKCSAQCAGGSQVQAVECRNQLDSSAVAPHYCSAHSKLPKRQRACN---------TEPCPPDWVVGNW------SLCSRSCDAGVRSRSVVCQRRVSAAEEKALDDSACPQPRPPVLEA-CHGPTCP--PEWAALDWSECTPSCGPGLRHRVVLCKSADHRATLPPAHCSPAAKPPATMRCNLRRCPPARWVAGEWGECS-----AQCGVGQRQRSVRCTS-HTGQASHECTEALRPPTTQQCEAK 1056

The following BLAST results are available for this feature:

BLAST of TCONS_00034923-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00034923-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ATS10	1.595e-23	28.08	A disintegrin and metalloproteinase with thrombosp...	[more]

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TCONS_00034923-protein (polypeptide) - C. hemisphaerica