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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034679 ID=TCONS_00034679|Name=TCONS_00034679|organism=Clytia hemisphaerica|type=transcript|length=1187bp
caacaaaaaagaaagatagAATATTgtgaaagaaagattttgaacCATGG
aagatttatttcaaaaatatcaaatgacaGAAGCACAAAAGGGCTTAGTA
AATGGCATTaagaatattaaaaatttaccgACCTTCATTGAAGAGATGGA
TGATGTGGAACAATTGATTTGGGTCGTTGCCGTGGCAACCATTGACATGC
CCAAAGAACCTACAGACaatgatttgaagttttataaGAATGCTGTTGAT
GAAAGAGTTAGAAGGCTTGAAGAAGCAGAAAGGCGTTACAAATGGTTTTC
ATTGAAGTGGAACAAAACATCAATGCGTCGTTTGATAACGAATTGGTTTT
GTGGTATAATGGTCATCGACCCAAACCTCAAGACCAAAGATGGCTCACCA
ATGCAATTCGTTTATGAATATTACGGACCAGAATCAAAATATCCTGACAA
GGAGCATCAAACAGATGATTGGAAAAAAGAAGGGATTGACTTTTATGTGT
TGATGGCTCGAAGCATTTGTAGAACATACCCTGAAGCTACTTCGAAAGGA
ACCAGACGCTTTGAAATTGTTGTTGGAAACTTTTGACGAGATGGAAAAAG
CTGGTGAAATACCACACCCCAAACACATGGAGTGATTTTTTTAGCTAGCT
ACGTGATCATTCGGGGTTTAGACATCAAAGTTTCGATAACTCAGGGAAAA
TGGAGgagttaaatttttcagatcACTCGTATATAACAGAATTGTTTGTA
ATTTAGTGTCTTGTTAAACTgatttcatagcccttttttgcttgtttttg
tcgACTGTTACGCTTCTTATGCGcatcaaagaaaaagtttcttgataaac
attgaatttcatgtatgaaataaaggtccgaaccaaacgatttgaattcg
aaatcttcttcaaccgaggggggggcaatgaatgaaaaagtacctacgta
cttaccagggggtatagctatttgcgtacgcttgcgtacagggtcttttg
tttcttttgctaaaaatattagaaaaaagaattcaaatccaGTGCCTTTA
TAACTGTCGATTGTTCTCTGTGTGGGTTCAATTTTGAGACCCTATTTTTT
CGTCTTAATTCTATTGCCCCTCCCTGGGGAACTATTCTATCCTAGTGGAG
TattttttgcttcattttttttaaatcatccTAATAA Run BLAST on NCBI transcript from alignment at sc0001204:28962..33242- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034679 ID=TCONS_00034679|Name=TCONS_00034679|organism=Clytia hemisphaerica|type=transcript|length=4281bp|location=Sequence derived from alignment at sc0001204:28962..33242- (Clytia hemisphaerica)
CAACAAAAAAGAAAGATAGAATATTGTGAAAGAAAGATTTTGAACCATGG
AAGATTTATTTCAAAAATATCAAATGACAGAAGCACAAAAGGGCTTAGTA
AATGGCATTAAGAATATTAAAAATTTACCGACCTTCATTGAAGAGATGGA
TGATGTGGAACAATTGATTTGGGTCGTTGCCGTGGCAACCATTGACATGC
CCAAAGAACCTACAGACAATGATTTGAAGTTTTATAAGAATGCTGTTGAT
GAAAGAGTTAGAAGGTATGCGATGTTACTGTACCTCGGAAACAAACTTTA
TTTTTATTCAGCCTCTCCATAAATCTTTTCGATATCTAATGCTTATCAAA
TCTTCATTTTCAGCCTCAAATAATGCTTGTTCATATACGTGCGAAGGATT
TGTCGATTTTGGCCGATTTTCATTTTCACTTTCTAAGACAATTGTTCAAA
TTCTTTTGTTTCATTTTAAATATCATTGTTTCAACGTGGCTAAGTCGAAT
TATGGTGCAGTGGCAACCTCCCTGTCTCAATGATAACATTTAAAAAAAAA
AATTTGAATGGTGAATTTTCCAAGTTTTGAGCTACGCTAAGCATTTTTTC
TGCAAATTTAAGCCACAGTATACCTTTAAACAATATGCTTATATAAAAAA
TAATTAGAACCAGAAAAAGGAGACAGAAATTCACAAAGCTAATGTCCATT
TAAAACATTGCAAACATCGTTGCATTGCATGGACGTTGAAACAACAATTG
GTTTAATCTTTCATTATTAGGCTTGAAGAAGCAGAAAGGCGTTACAAATG
GTTTTCATTGAAGTGGAACAAAACATCAATGCGTCGTTTGATAACGAATT
GGTTTTGTGGTATAATGGTCATCGACCCAAACCTCAAGACCAAAGATGGC
TCACCAATGCAATTCGTTTATGAATATTACGGACCAGAATCAAAATATCC
TGACAAGGTTTGATCCATTTTGACCCTTGGTAAACTTGACCTTAAAATTA
CATTCCTCTTGTTTTTCTGGCTTTCTTTTGTCATTCGACTTATACGTAAA
TAGAGGTATTTTACTATTCCTATTTCTCGGTTGAAAAGGACACAGATCTT
TCTTGACTGAGAGATCAGAGATAGACTTGCGTCAAATTCTCTGAATAACC
CTGTCTCGCCAAAAAATATAAGATATGAATACATTTGACGTTTCTTTTTC
ATTGCCAAGTTGCAAAAACCTTCAATATTCAGATTCTCATCAACCATTGT
ATTCATCAAGAGAAACCCAACGGGTCGTCGGGTCGAGCTTCCTCCCTTCT
TTTTCTTTTTGGGAGGTAGTCATGGCGTTCTAAATCAAATTTGACACAGC
ACAAGAAGTGAAGAAGAGAAAAAATTGTGGAACTGGGTTAGCAATAGTTT
TGGCAAATCTCATCACGTTAAAAAGATTGATTTGCAATTAATTGAATATT
TAGCTTAATCACCTTTCGTGGTTTATTGGTAATGCTAGACAGACCTACAT
AACTCTTAAAAGAAATGACACATAGGCTAGAAATTTGAAAAAAGGGACTA
AAGGGACTAAAGGGACGAGTGTTTTGGGCGAGACGTCGGTAGCAGTTAAA
TTTATGCATTTAAAGGCCGGTCTCCACTTTCGAGCAAAATGAGCGAAAAT
TTTTTAACGCTTTTGTAAGGTCATTGATCGGTTGAAAAATGAAGCAATTC
CATTGGTCAAAATTGTTCGCGCGAAACTCTTTTATGACGTAATCTTTTAT
GACGTAATCTTTTATGACGTAATCTTTTCTTGAGGCAAAAAAGTTTGATA
AAAAAATTGTCACCCATTTCGCGTGAAATTGGAGACCAGCCTTAACTGAT
GTATGCTCCTCTTTAATGAATGAATTTCATTTTCTGTATTGTCTAGGAGC
ATCAAACAGATGATTGGAAAAAAGAAGGGATTGACTTTTATGTGTTGATG
GCTCGAAGCATTTGTAGAACATACCCTGAAGCTACTTCGAAAGGTCAGTA
TTGCAAAAGTCATGGGAATTAGCTTTTATCACGGAATTCCGTACTTTTAT
TCATTATATTCACAACGTAATGTTTTCTAAGGAAACGTGTGTGAACCATC
CGGTGTCCCTAATAAAAATTCATTATATTAATCATAATGACATAATATTT
TCTACGGACCCCGGCTTTTGCCAGTTGTGGCAAATTTGAGCTAGAGAGAA
TTGCCACTACTGACCAAATCCAGTGTCCTTAGAAAACATTACATAATGAC
TATCATGAATCTTTAGGAACACCGGATGGTGCACACGTTCAACAACAGGC
TACCAGTCAAGGTTATGTTCAAATTAGCCGATCGTCGGTTGTTTAGCCGC
AAAATACAATACAAATTTTTACCAATTATCATTGCTTTTCACGAAATAAA
TATGATGGACAGAATTCGTTTTAGTTCACTAAAAAAGTGGTCAAATTGCC
CAGTTTTCTTTAAATACAGACTTTTTTATTTCATAATACTCATTTATTTC
CAGGTATTGTATCATTTTCCGACATGTCGGCTTTTGATTGGGAAAAATAC
GACATGGAAACGAAAACACGTCATTCAGAAATCGGTTCGTTGATTCCCAA
CAAGTTAAGGGCTCTGACCATAGTGAATTTTTCATAATTGCCGTGTTTAA
AATATGTTTTCTGACTGATGTAACCAACAAAACTATGGCATGTTATACAT
TTTCTGTTAGAGAAACTATTCCTGAATCTGAAAATTCAAAAATTGCATTG
AAAAATTTTGATGAAGAAGAAAATGAAGACTTTTGCGAGGAAGAGTATTT
CAACTTTGAAGAGCTTAGTTTCGGCGAAGAAAAAACATTTTGAAAATTTT
TTTGCAGTAGATGGTGTATCTTTTACCGAACAATAAAAATTTTTGCGGAA
AATTTTTGTAAATGCTTCTATGTCTCGAAATCTTCGAAATAGTGGTTTTT
CATCAATTTTTCAACTGGATTTTGCTTAAAAAAACAGTCATAGCTTTTGA
CACATCTTTTTAGAAAAATTTTCCGCAAAATTTAAAATAGTTCAACNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTTAACTCGCATGATTACTGTGCGTCCC
GACGATAAAATGAGAGGTTTTTATAAAGACATGACTCCAAGAGTAAGGAA
AAAATTTGGATTTGTTGTTTATGAGGACTTTGGAACCGCCATCGAGGCTG
AAGGTGATCTTCTACCTGGAGAGATGCCACATTTTGTGGGCGGTACATTG
AGGGTGGATATTTTGAAATGTTTGAAGCATTTATTTTCACAGGAACCAGA
CGCTTTGAAATTGTTGTTGGAAACTTTTGACGAGATGGAAAAAGCTGGTG
AAATACCACACCCCAAACACATGGAGTGATTTTTTTAGCTAGCTACGTGA
TCATTCGGGGTTTAGACATCAAAGTTTCGATAACTCAGGGAAAATGGAGG
AGTTAAATTTTTCAGATCACTCGTATATAACAGAATTGTTTGTAATTTAG
TGTCTTGTTAAACTGATTTCATAGCCCTTTTTTGCTTGTTTTTGTCGACT
GTTACGCTTCTTATGCGCATCAAAGAAAAAGTTTCTTGATAAACATTGAA
TTTCATGTATGAAATAAAGGTCCGAACCAAACGATTTGAATTCGAAATCT
TCTTCAACCGAGGGGGGGGCAATGAATGAAAAAGTACCTACGTACTTACC
AGGGGGTATAGCTATTTGCGTACGCTTGCGTACAGGGTCTTTTGTTTCTT
TTGCTAAAAATATTAGAAAAAAGAATTCAAATCCAGTGCCTTTATAACTG
TCGATTGTTCTCTGTGTGGGTTCAATTTTGAGACCCTATTTTTTCGTCTT
AATTCTATTGCCCCTCCCTGGGGAACTATTCTATCCTAGTGGAGTATTTT
TTGCTTCATTTTTTTTAAATCATCCTAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034679-exon-sc0001204-1575043694:32979..33242 | TCONS_00034679-exon-sc0001204-1575043694:32979..33242 | Clytia hemisphaerica | exon |
| TCONS_00034679-exon-sc0001204-1575043694:32286..32472 | TCONS_00034679-exon-sc0001204-1575043694:32286..32472 | Clytia hemisphaerica | exon |
| TCONS_00034679-exon-sc0001204-1575043694:31250..31346 | TCONS_00034679-exon-sc0001204-1575043694:31250..31346 | Clytia hemisphaerica | exon |
| TCONS_00034679-exon-sc0001204-1575043694:28962..29600 | TCONS_00034679-exon-sc0001204-1575043694:28962..29600 | Clytia hemisphaerica | exon |
| TCONS_00034679-exon-sc0001204-1510915933:32979..33242 | TCONS_00034679-exon-sc0001204-1510915933:32979..33242 | Clytia hemisphaerica | exon |
| TCONS_00034679-exon-sc0001204-1510915933:32286..32472 | TCONS_00034679-exon-sc0001204-1510915933:32286..32472 | Clytia hemisphaerica | exon |
| TCONS_00034679-exon-sc0001204-1510915933:31250..31346 | TCONS_00034679-exon-sc0001204-1510915933:31250..31346 | Clytia hemisphaerica | exon |
| TCONS_00034679-exon-sc0001204-1510915933:28962..29600 | TCONS_00034679-exon-sc0001204-1510915933:28962..29600 | Clytia hemisphaerica | exon |
| TCONS_00034679-exon-sc0001204-1491911889:32979..33242 | TCONS_00034679-exon-sc0001204-1491911889:32979..33242 | Clytia hemisphaerica | exon |
| TCONS_00034679-exon-sc0001204-1491911889:32286..32472 | TCONS_00034679-exon-sc0001204-1491911889:32286..32472 | Clytia hemisphaerica | exon |
| TCONS_00034679-exon-sc0001204-1491911889:31250..31346 | TCONS_00034679-exon-sc0001204-1491911889:31250..31346 | Clytia hemisphaerica | exon |
| TCONS_00034679-exon-sc0001204-1491911889:28962..29600 | TCONS_00034679-exon-sc0001204-1491911889:28962..29600 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001204 | supercontig | sc0001204:28962..33242 - |
Blast
The following BLAST results are available for this feature:
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