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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028183 ID=TCONS_00028183|Name=TCONS_00028183|organism=Clytia hemisphaerica|type=transcript|length=2980bp
ttctgtACTATGTACAGCTAGGTAAAGTCATCCTCCTGAGAACAATCTAC
TTTGATCGGTTTAACCGAATTAATTTTCGAGAGATTCAATTTAACTTTTC
CGCAAAATGTTAccatttttctgaaattaaattCACACGAGATTTTCAAG
GTATAAAACACTGTAAATTTGCTATTTTGCCATTTTCACGGTCACTTTCA
ACGATTTTTTCGCTGATTTCGTGTAATTAACTCTCACGAAAATTTTAAAC
TGATCAAAGTAGCTGTTTTGGAAAgtattattattcactaaaaagCATAG
GATACcccttatatttctttgttctCGAAATTAGATAAGTCAAAtcgcaa
aaagatttttgagttttgaggaATAAATTTCGcactaatataatttcaaa
attaagtaTACAGCGTGTCCGAAAAAATCGGAACAGAATTTTCATGGGTT
TTAATAAATATCGATTACTATATGTCCAacttttttccggaaaaaactGT
AAAGTATAACTCAAAGTGAAAGATTTCCTatcaaaatgcatatcaaaaag
AGCATCTTTATAACTCAGTTGTCGGATTGGATGATGGTTTATCCTTAGCA
GATTGTTCATCACCATCATCCTCTCCAACAACAGCAATGTTTTCCTCACC
AACAGGTGATTGTCTGTCTATCGCTTCGTCTGATTCTAAAGCTTCATTAG
AAGCTCCTTCTTCATGAAAAACTTCATTATTTTTATCGTTTTGTTGTGAA
TCCGCATCTTTATCTACAGCACTTTCACTGTCTTTGTcctcatttttatt
ttgttcatctTCTCCCTCTTGAACATTATTATCTGGAGGTGGTGAAGCTT
GTTGCGCAGACTCTTCAGCTGCCGGTGCTGCATTCTCCTCTGTCTGTTTA
TCTTCGGAGGAGGGTGTCTCCTTATTATTGTCTTTATCTCCCTCAACAGT
CTCTTTACTTTCGTCACCTCTCTCTCTGGCTTCTTCAGCAGGGGGTGGTA
TACCTTCCGAATTTCTCCAGATATAGTTTATAAGCAAATAGATGAAAAAG
ATAACGATACATAAACATCCAAACAAGACGAACGTTTTCGGGGCGCCATA
ATGATGGACCAAAATACCACCGATCACTTCACCCGCGCCATACCCAAGAC
CCCAGTGAACACCGTGTAAAATACATTGCATTGTGGTCTGGGCACCTGGT
CTAGAATTTTTACTGACGTAAGATAAACATGCGGCCCATACGGCGGCCGT
TGTGATTCCCGGGAGGAGTTCGACGGCCAATACCATCCACGTGTTTGGAA
TGACGGCATAGTAAAACAAACGGACGGAATAACATAATAATCCCAAATAT
AAAACACGAACTTCGCCGATCTTTTTAATAAGTCTTTCTGATAAGAAGTA
CATGCTGACTTCGGCGACACAATTGACAGCCGAGATGACGGAAAACAGTA
ATTGGGTACCTCCCAAATCTTTCAAATgccaaaacaaaaatgtcttAATG
AATGCCATCAGAAATCCAAGGTAAAGAGCGGTGAATAAAAACATGAGATA
GGTTGGCTGTTTCAAGGCGACCAAACCAACTGACAAACTTCGTTTTTGAG
CAGCTTTCTTTTTCGCATTGAAATGAAGTTTCAGTGAGATAATTAAGCCG
AGCGACATCAGGACTGCAAAAACGTAAAAGGAAGGGATGAAGTCGACAAC
TTCACGATTCTTACTGATCGCACAACGATGAGTGGTCTTGAGGGACGCTC
CGACGATGAATGCGCCCATACCCCAACCAAGCGATCCGGTCAATCTCTGT
TTTCCGTATCGATGAGACTCTTTACCCAGCATGGTTAAGGTTGCAGTATC
GACCAAAGCGAGGGCCGGTGAAGCAATCACGTTTCCAAACAATGTGATCA
AGAATAAAGATGTGAAGGTTTGAGTCGCGTCGATTTTGTATTTCTGGTAA
ATCTCCTCACTTAGGTTGGTGATGAAATCCAGCGGCCAGGGATCAGGGTC
TTTGGAGAAATAGTAATCTTGCGTGTTGTCATTAAGCACCATTTTATCGA
TCTCCGGTTCACCAACCAGTGAAGACATTTCGTCGTTCATATCGCGATCC
GTTCTGTTGCAATGCTTCTCTAAAATGATTGGCTGTTGTTTGGGGCCTGG
AACCAGGGACAATGCGAAGGTGGATGTGATGAGAGCGATCATAGAGATGA
CCAGAGCGAACCGATGGATGTGAAACTTGTCCACTAATGCTCCCCATACT
GGCGTTGCAAGGAACTGAACGAATGGTTTCAATCCCATGATTACACCGAC
TTGACTTGGAGTCAACATCAATTGTTTGAAATACAGGGCCAAGTATGGTA
ACAACGATCCCCAAGCGGAGAAGAAACAGAAGTAGTAGCCTTTGGAGAGC
AACAGTTGTCGGTTGACTTGTGGGCAGCATAATCCCATAGCTTTCCGGTC
TTCGGTGTTCAGTAGTTTGAAGTCTTCCTCTTCTTCTTCCTCCTGAGGTT
GGTCCCCTCCTCCTCCTTCCACATCCTGCATTAGAGGTTGATTCTCCTCG
CTACCTCCTTCTCCAGGGGAGGTATCCGCCTCATCGTTGCGTGTCCCCAT
ACCGGCTTTTCAGTCTTCAAGAAAATTCCAAATCCAAAGTAatatgaaac
ataaaaaaaatcaatttcgtCTATCCATTTTCAGCTTGGTTGGTGTTCTG
TTTCTATTGCAGCTGCAAAATTTTTGGTCAGCTCACCTTGAgtataaaca
aaacaaagcaaacgttcgaatttcataATAGGTAATGAAGCGTATAGTTT
TCTTTGTGAGGTAATTCGATGTTTTGAGTGCAAAATGTTGTCTCTCACCT
CCACAAAACTTTCTTCTTCCAAAtagcaaacaaatttgtttatcaaaaac
aatagaaacagTGTTTCAAAAACTGAGATTAaaattaaagatatttattt
actataattaacaaaaaaatcaaactgaag Run BLAST on NCBI protein sequence of TCONS_00028183-protein >TCONS_00028183-protein ID=TCONS_00028183-protein|Name=TCONS_00028183-protein|organism=Clytia hemisphaerica|type=polypeptide|length=680bp
MGTRNDEADTSPGEGGSEENQPLMQDVEGGGGDQPQEEEEEEDFKLLNTE
DRKAMGLCCPQVNRQLLLSKGYYFCFFSAWGSLLPYLALYFKQLMLTPSQ
VGVIMGLKPFVQFLATPVWGALVDKFHIHRFALVISMIALITSTFALSLV
PGPKQQPIILEKHCNRTDRDMNDEMSSLVGEPEIDKMVLNDNTQDYYFSK
DPDPWPLDFITNLSEEIYQKYKIDATQTFTSLFLITLFGNVIASPALALV
DTATLTMLGKESHRYGKQRLTGSLGWGMGAFIVGASLKTTHRCAISKNRE
VVDFIPSFYVFAVLMSLGLIISLKLHFNAKKKAAQKRSLSVGLVALKQPT
YLMFLFTALYLGFLMAFIKTFLFWHLKDLGGTQLLFSVISAVNCVAEVSM
YFLSERLIKKIGEVRVLYLGLLCYSVRLFYYAVIPNTWMVLAVELLPGIT
TAAVWAACLSYVSKNSRPGAQTTMQCILHGVHWGLGYGAGEVIGGILVHH
YGAPKTFVLFGCLCIVIFFIYLLINYIWRNSEGIPPPAEEARERGDESKE
TVEGDKDNNKETPSSEDKQTEENAAPAAEESAQQASPPPDNNVQEGEDEQ
NKNEDKDSESAVDKDADSQQNDKNNEVFHEEGASNEALESDEAIDRQSPV
GEENIAVVGEDDGDEQSAKDKPSSNPTTEL Run BLAST on NCBI transcript from alignment at sc0000667:55453..58432 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028183 ID=TCONS_00028183|Name=TCONS_00028183|organism=Clytia hemisphaerica|type=transcript|length=2980bp|location=Sequence derived from alignment at sc0000667:55453..58432 (Clytia hemisphaerica)
cttcagtttgatttttttgttaattatagtaaataaatatctttaatttT
AATCTCAGTTTTTGAAACActgtttctattgtttttgataaacaaatttg
tttgctaTTTGGAAGAAGAAAGTTTTGTGGAGGTGAGAGACAACATTTTG
CACTCAAAACATCGAATTACCTCACAAAGAAAACTATACGCTTCATTACC
TATtatgaaattcgaacgtttgctttgttttgtttatacTCAAGGTGAGC
TGACCAAAAATTTTGCAGCTGCAATAGAAACAGAACACCAACCAAGCTGA
AAATGGATAGacgaaattgattttttttatgtttcatatTACTTTGGATT
TGGAATTTTCTTGAAGACTGAAAAGCCGGTATGGGGACACGCAACGATGA
GGCGGATACCTCCCCTGGAGAAGGAGGTAGCGAGGAGAATCAACCTCTAA
TGCAGGATGTGGAAGGAGGAGGAGGGGACCAACCTCAGGAGGAAGAAGAA
GAGGAAGACTTCAAACTACTGAACACCGAAGACCGGAAAGCTATGGGATT
ATGCTGCCCACAAGTCAACCGACAACTGTTGCTCTCCAAAGGCTACTACT
TCTGTTTCTTCTCCGCTTGGGGATCGTTGTTACCATACTTGGCCCTGTAT
TTCAAACAATTGATGTTGACTCCAAGTCAAGTCGGTGTAATCATGGGATT
GAAACCATTCGTTCAGTTCCTTGCAACGCCAGTATGGGGAGCATTAGTGG
ACAAGTTTCACATCCATCGGTTCGCTCTGGTCATCTCTATGATCGCTCTC
ATCACATCCACCTTCGCATTGTCCCTGGTTCCAGGCCCCAAACAACAGCC
AATCATTTTAGAGAAGCATTGCAACAGAACGGATCGCGATATGAACGACG
AAATGTCTTCACTGGTTGGTGAACCGGAGATCGATAAAATGGTGCTTAAT
GACAACACGCAAGATTACTATTTCTCCAAAGACCCTGATCCCTGGCCGCT
GGATTTCATCACCAACCTAAGTGAGGAGATTTACCAGAAATACAAAATCG
ACGCGACTCAAACCTTCACATCTTTATTCTTGATCACATTGTTTGGAAAC
GTGATTGCTTCACCGGCCCTCGCTTTGGTCGATACTGCAACCTTAACCAT
GCTGGGTAAAGAGTCTCATCGATACGGAAAACAGAGATTGACCGGATCGC
TTGGTTGGGGTATGGGCGCATTCATCGTCGGAGCGTCCCTCAAGACCACT
CATCGTTGTGCGATCAGTAAGAATCGTGAAGTTGTCGACTTCATCCCTTC
CTTTTACGTTTTTGCAGTCCTGATGTCGCTCGGCTTAATTATCTCACTGA
AACTTCATTTCAATGCGAAAAAGAAAGCTGCTCAAAAACGAAGTTTGTCA
GTTGGTTTGGTCGCCTTGAAACAGCCAACCTATCTCATGTTTTTATTCAC
CGCTCTTTACCTTGGATTTCTGATGGCATTCATTaagacatttttgtttt
ggcATTTGAAAGATTTGGGAGGTACCCAATTACTGTTTTCCGTCATCTCG
GCTGTCAATTGTGTCGCCGAAGTCAGCATGTACTTCTTATCAGAAAGACT
TATTAAAAAGATCGGCGAAGTTCGTGTTTTATATTTGGGATTATTATGTT
ATTCCGTCCGTTTGTTTTACTATGCCGTCATTCCAAACACGTGGATGGTA
TTGGCCGTCGAACTCCTCCCGGGAATCACAACGGCCGCCGTATGGGCCGC
ATGTTTATCTTACGTCAGTAAAAATTCTAGACCAGGTGCCCAGACCACAA
TGCAATGTATTTTACACGGTGTTCACTGGGGTCTTGGGTATGGCGCGGGT
GAAGTGATCGGTGGTATTTTGGTCCATCATTATGGCGCCCCGAAAACGTT
CGTCTTGTTTGGATGTTTATGTATCGTTATCTTTTTCATCTATTTGCTTA
TAAACTATATCTGGAGAAATTCGGAAGGTATACCACCCCCTGCTGAAGAA
GCCAGAGAGAGAGGTGACGAAAGTAAAGAGACTGTTGAGGGAGATAAAGA
CAATAATAAGGAGACACCCTCCTCCGAAGATAAACAGACAGAGGAGAATG
CAGCACCGGCAGCTGAAGAGTCTGCGCAACAAGCTTCACCACCTCCAGAT
AATAATGTTCAAGAGGGAGAagatgaacaaaataaaaatgaggACAAAGA
CAGTGAAAGTGCTGTAGATAAAGATGCGGATTCACAACAAAACGATAAAA
ATAATGAAGTTTTTCATGAAGAAGGAGCTTCTAATGAAGCTTTAGAATCA
GACGAAGCGATAGACAGACAATCACCTGTTGGTGAGGAAAACATTGCTGT
TGTTGGAGAGGATGATGGTGATGAACAATCTGCTAAGGATAAACCATCAT
CCAATCCGACAACTGAGTTATAAAGATGCTctttttgatatgcattttga
tAGGAAATCTTTCACTTTGAGTTATACTTTACagttttttccggaaaaaa
gtTGGACATATAGTAATCGATATTTATTAAAACCCATGAAAATTCTGTTC
CGATTTTTTCGGACACGCTGTAtacttaattttgaaattatattagtgCG
AAATTTATtcctcaaaactcaaaaatctttttgcgaTTTGACTTATCTAA
TTTCGagaacaaagaaatataagggGTATCCTATGctttttagtgaataa
taatacTTTCCAAAACAGCTACTTTGATCAGTTTAAAATTTTCGTGAGAG
TTAATTACACGAAATCAGCGAAAAAATCGTTGAAAGTGACCGTGAAAATG
GCAAAATAGCAAATTTACAGTGTTTTATACCTTGAAAATCTCGTGTGaat
ttaatttcagaaaaatggTAACATTTTGCGGAAAAGTTAAATTGAATCTC
TCGAAAATTAATTCGGTTAAACCGATCAAAGTAGATTGTTCTCAGGAGGA
TGACTTTACCTAGCTGTACATAGTacagaa Coding sequence (CDS) from alignment at sc0000667:55453..58432 >TCONS_00028183 ID=TCONS_00028183|Name=TCONS_00028183|organism=Clytia hemisphaerica|type=CDS|length=2043bp|location=Sequence derived from alignment at sc0000667:55453..58432 (Clytia hemisphaerica)
ATGGGGACACGCAACGATGAGGCGGATACCTCCCCTGGAGAAGGAGGTAG
CGAGGAGAATCAACCTCTAATGCAGGATGTGGAAGGAGGAGGAGGGGACC
AACCTCAGGAGGAAGAAGAAGAGGAAGACTTCAAACTACTGAACACCGAA
GACCGGAAAGCTATGGGATTATGCTGCCCACAAGTCAACCGACAACTGTT
GCTCTCCAAAGGCTACTACTTCTGTTTCTTCTCCGCTTGGGGATCGTTGT
TACCATACTTGGCCCTGTATTTCAAACAATTGATGTTGACTCCAAGTCAA
GTCGGTGTAATCATGGGATTGAAACCATTCGTTCAGTTCCTTGCAACGCC
AGTATGGGGAGCATTAGTGGACAAGTTTCACATCCATCGGTTCGCTCTGG
TCATCTCTATGATCGCTCTCATCACATCCACCTTCGCATTGTCCCTGGTT
CCAGGCCCCAAACAACAGCCAATCATTTTAGAGAAGCATTGCAACAGAAC
GGATCGCGATATGAACGACGAAATGTCTTCACTGGTTGGTGAACCGGAGA
TCGATAAAATGGTGCTTAATGACAACACGCAAGATTACTATTTCTCCAAA
GACCCTGATCCCTGGCCGCTGGATTTCATCACCAACCTAAGTGAGGAGAT
TTACCAGAAATACAAAATCGACGCGACTCAAACCTTCACATCTTTATTCT
TGATCACATTGTTTGGAAACGTGATTGCTTCACCGGCCCTCGCTTTGGTC
GATACTGCAACCTTAACCATGCTGGGTAAAGAGTCTCATCGATACGGAAA
ACAGAGATTGACCGGATCGCTTGGTTGGGGTATGGGCGCATTCATCGTCG
GAGCGTCCCTCAAGACCACTCATCGTTGTGCGATCAGTAAGAATCGTGAA
GTTGTCGACTTCATCCCTTCCTTTTACGTTTTTGCAGTCCTGATGTCGCT
CGGCTTAATTATCTCACTGAAACTTCATTTCAATGCGAAAAAGAAAGCTG
CTCAAAAACGAAGTTTGTCAGTTGGTTTGGTCGCCTTGAAACAGCCAACC
TATCTCATGTTTTTATTCACCGCTCTTTACCTTGGATTTCTGATGGCATT
CATTaagacatttttgttttggcATTTGAAAGATTTGGGAGGTACCCAAT
TACTGTTTTCCGTCATCTCGGCTGTCAATTGTGTCGCCGAAGTCAGCATG
TACTTCTTATCAGAAAGACTTATTAAAAAGATCGGCGAAGTTCGTGTTTT
ATATTTGGGATTATTATGTTATTCCGTCCGTTTGTTTTACTATGCCGTCA
TTCCAAACACGTGGATGGTATTGGCCGTCGAACTCCTCCCGGGAATCACA
ACGGCCGCCGTATGGGCCGCATGTTTATCTTACGTCAGTAAAAATTCTAG
ACCAGGTGCCCAGACCACAATGCAATGTATTTTACACGGTGTTCACTGGG
GTCTTGGGTATGGCGCGGGTGAAGTGATCGGTGGTATTTTGGTCCATCAT
TATGGCGCCCCGAAAACGTTCGTCTTGTTTGGATGTTTATGTATCGTTAT
CTTTTTCATCTATTTGCTTATAAACTATATCTGGAGAAATTCGGAAGGTA
TACCACCCCCTGCTGAAGAAGCCAGAGAGAGAGGTGACGAAAGTAAAGAG
ACTGTTGAGGGAGATAAAGACAATAATAAGGAGACACCCTCCTCCGAAGA
TAAACAGACAGAGGAGAATGCAGCACCGGCAGCTGAAGAGTCTGCGCAAC
AAGCTTCACCACCTCCAGATAATAATGTTCAAGAGGGAGAagatgaacaa
aataaaaatgaggACAAAGACAGTGAAAGTGCTGTAGATAAAGATGCGGA
TTCACAACAAAACGATAAAAATAATGAAGTTTTTCATGAAGAAGGAGCTT
CTAATGAAGCTTTAGAATCAGACGAAGCGATAGACAGACAATCACCTGTT
GGTGAGGAAAACATTGCTGTTGTTGGAGAGGATGATGGTGATGAACAATC
TGCTAAGGATAAACCATCATCCAATCCGACAACTGAGTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028183-exon-sc0000667-1491911889:55453..58432 | TCONS_00028183-exon-sc0000667-1491911889:55453..58432 | Clytia hemisphaerica | exon |
| TCONS_00028183-exon-sc0000667-1510915933:55453..58432 | TCONS_00028183-exon-sc0000667-1510915933:55453..58432 | Clytia hemisphaerica | exon |
| TCONS_00028183-exon-sc0000667-1575043694:55453..58432 | TCONS_00028183-exon-sc0000667-1575043694:55453..58432 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000667 | supercontig | sc0000667:55453..58432 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00028183 vs. Swiss-Prot (Human)
Match: MFSD6 (Major facilitator superfamily domain-containing protein 6 OS=Homo sapiens GN=MFSD6 PE=1 SV=2) HSP 1 Score: 228.409 bits (581), Expect = 8.711e-63 Identity = 124/348 (35.63%), Postives = 191/348 (54.89%), Query Frame = -3
Query: 1020 IYQKYKIDATQTFTSLFLITLFGNVIASPALALVDTATLTMLGKESHRYGKQRLTGSLGWGMGAFIVGASLKTTHRCAI-----SKNREVVDFIPSFYVFAVLMSLGLIISLKLHF---NAKKKAAQKRSLSVGLVALKQPT-----------------------------YLMFLFTALYLGFLMAFIKTFLFWHLKDLGGTQLLFSVISAVNCVAEVSMYFLSERLIKKIGEVRVLYLGLLCYSVRLFYYAVIPNTWMVLAVELLPGITTAAVWAACLSYVSKNSRPGAQTTMQCILHGVHWGLGYGAGEVIGGILVHHYGAPKTFVLFGCLCIVIFFIYLLINYI 1952
+Y + +++A F + ++ + G ++ ++ +VDT TL LGK RYG QR+ GSLGWG+ VG + TH + K E ++ F VF VLM++ LI++ + F + K ++ + + + V T Y LF A ++GF F+ TFL+WHL+DL GT LF V S ++ V+E++ YF S +LI+ IG +RVLY+GL C + R Y + + N W VL +E+L G+T AA+WAAC+SY+S P +T+ Q IL G+H GLG G G +IGG+LV+++GA TF G C+VI ++ LI ++
Sbjct: 278 VYDQQEVEAI--FLVILVVVIIGEFFSASSVTIVDTVTLQYLGKHRDRYGLQRMWGSLGWGLAMLSVGIGIDYTHIEVLIDGKGCKPPEYRNYQIVFIVFGVLMTMALIVATQFRFRYNHFKNDDSKGKEVEIPQVERNNSTESSEETPTTTSHSQAFNFWDLIKLLCSVQYGSVLFVAWFMGFGYGFVFTFLYWHLEDLNGTTTLFGVCSVLSHVSELTAYFFSHKLIELIGHIRVLYIGLACNTARYIYISYLENAWTVLPMEVLQGVTHAAIWAACISYLSAAVPPELRTSAQGILQGLHLGLGRGCGAMIGGVLVNYFGAAATFRGIGMACLVILLLFALIQWL 623 HSP 2 Score: 85.8853 bits (211), Expect = 6.179e-17 Identity = 35/92 (38.04%), Postives = 61/92 (66.30%), Query Frame = -3
Query: 2151 CPQVNRQLLLSKGYYFCFFSAWGSLLPYLALYFKQLMLTPSQVGVIMGLKPFVQFLATPVWGALVDKFHIHRFALVISMIALITSTFALSLV 2426
C ++N LL+SK +YF F+SA+GSL P L +Y+KQL ++PSQ G+++G++ F++F + P WG + D+F + L+ S++ + + V
Sbjct: 61 CVKINNDLLISKVFYFFFYSAYGSLYPLLPVYYKQLGMSPSQSGLLVGIRYFIEFCSAPFWGVVADRFKKGKIVLLFSLLCWVLFNLGIGFV 152
The following BLAST results are available for this feature:
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