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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028149 ID=TCONS_00028149|Name=TCONS_00028149|organism=Clytia hemisphaerica|type=transcript|length=2001bp
NNCCAGCCATAACAAACCAATTATCAACATTTATACCACATTTAGACATA
CATTTTCGAATTGAACGACCATACGTCATCTTAGGACATCCCCTGGGTCG
TTTCGATACTACCCATGAGGAAAGCATTTTCCGAGGAAGACGATCCCAGT
CCATCCTACTCACGTGACCAATCCACCTCAATTGCTGTCTATAAATATAC
GTTTCGATAGATTCGAGCCCAACACGTTCAAGAAGCTCATCAGTTGAGAT
TCTATGTAGAAATGTGTGCTTTCGATTTACTCGGCACATACTACGTATAC
AACCATGGTAAAAGCTACGAATCTTTCTCAATAAAGATTCCGTCATGCAC
CAACATTCACTACCATAAAGAAGAATTGGTAAGATTAACGAACGAAATAT
TGATCCTTTGGCCTTATTGGTAATATCAGATGATGCAAACAAACATTTTC
TCAACATTCCAAAAGCACCACTTGCTTTGGCAATACGGGTATCCACATCC
TTTTCATCGGTACAATCGTTGGTAACTATACTACCAAGGTAACAAAACTC
GTCAACAATGGGCAAATAACGCTTTTCATCAATAATTACATCAGATAAGT
CGACATTATCAAGGGTTTCAGGGTTGTCATACATGAATATCGGTTTTGCA
CAGAACAATATCTCCGTTTTGGAGTCTGACTTGGGATTTATTGCACCGGT
ATGAATTTCCATTCCGAAACGATCAAAGTGGACGATTATTGAAGTAGCTC
CCTGTTGGATATGATCTCGACTCTCAAATAACAAAGCCGTATCGTCTGCA
TATTCCGAGTCTGGAAGCTCGAAATCTTCTCCTTTCGTGGTTGTTCTACG
ACCGGTCATTACAAAATCACTCTTACTCCGAAATATGCAAAACGGTATAC
CACAGGATAACTTCCAGGTTTCAATCATTGCGGTAATGTAAAAGGTAAAC
AATAGCGGTCCCAAAATATCACCTTGTTTCACACCGACGATGCTGTTAAT
GGTACGGACTACATCGCCTATAACGAATTTCACAGTGAAGTCAGCGTGTA
AAACTATTAAGAGATTTATCAATTTCAAAGGTACTCCATATTTCTCAAGT
ACCTTCCACAAAGCGATTCTCGGAACACGGTCGAAAGCTTTAACTAGATC
TAGGAATAAAATCCAGGTCTCCAGTCCATGTTCTCGTCTTTTCTTTATGG
CAGTTTTAACGGTAAACACAGCATCCATACAGCCTCTACCAGGGCGGAAA
CCTGATTGACTCTCATGATCTAAACTTTCCTCAATCGGTAGAAGTCTACG
ATGTAGAATAATTGCAATAATTTTATATGCATTTTCAAGGAGCATGATTC
CTCTGTAATTTTTTGGCAAGGAAAGATCTCCTTTTTTCGGTAACACATTA
AGCCTGCCAATGTTCCATTCTTTAGGTACTGTTTCGGTTACCCAGAAATC
AGTTATGATTGATTTCAATATCTGGAAAATTTCTTGgctgtcgataatta
ttttccaCGATTGGGTCATCACTCCAGACTCTCCTGGAgctttatttttc
aactttgaaatGGCAGTCCTTATTTCTTCATCCGAGGGAATTTCATCACA
GTTTTCGAAGACCGGTCTTTGGGACAGGAGATCTAAGACAGTTTCATCAA
AATTGACTtgattttcataaagtttttggAAATGATCTTTGAAAACGGTA
GCGTTTTCATCCGGGGTTTTGCATAAAGTACCGTCTGGTTTTTTCAATTG
CTTTTGAGTCACCGGTTTAACTTTTGACAGTCCTTTTTTTAGCAGTTTCA
CATTGTCCCAAGCAGTCTTAGTACCGACAGTTACATTAGTTGCGTGAGAG
ATGTAATGGAGCCACTTATTTTTGGCACTCCTTACTTTAGTTCGTAGTAA
CCGTAATCTCTCTTCTGAAAAACGAGTTCTTTTATTGAAAACACGTCTCA
TAGCCTCATTTCTGGCATCTATGAGAGCATTTAAGTTCTTTTCGTCAAAT
T Run BLAST on NCBI protein sequence of TCONS_00028149-protein >TCONS_00028149-protein ID=TCONS_00028149-protein|Name=TCONS_00028149-protein|organism=Clytia hemisphaerica|type=polypeptide|length=666bp
FDEKNLNALIDARNEAMRRVFNKRTRFSEERLRLLRTKVRSAKNKWLHYI
SHATNVTVGTKTAWDNVKLLKKGLSKVKPVTQKQLKKPDGTLCKTPDENA
TVFKDHFQKLYENQVNFDETVLDLLSQRPVFENCDEIPSDEEIRTAISKL
KNKAPGESGVMTQSWKIIIDSQEIFQILKSIITDFWVTETVPKEWNIGRL
NVLPKKGDLSLPKNYRGIMLLENAYKIIAIILHRRLLPIEESLDHESQSG
FRPGRGCMDAVFTVKTAIKKRREHGLETWILFLDLVKAFDRVPRIALWKV
LEKYGVPLKLINLLIVLHADFTVKFVIGDVVRTINSIVGVKQGDILGPLL
FTFYITAMIETWKLSCGIPFCIFRSKSDFVMTGRRTTTKGEDFELPDSEY
ADDTALLFESRDHIQQGATSIIVHFDRFGMEIHTGAINPKSDSKTEILFC
AKPIFMYDNPETLDNVDLSDVIIDEKRYLPIVDEFCYLGSIVTNDCTDEK
DVDTRIAKASGAFGMLRKCLFASSDITNKAKGSIFRSLILPILLYGSECW
CMTESLLRKIRSFYHGCIRSMCRVNRKHTFLHRISTDELLERVGLESIET
YIYRQQLRWIGHVSRMDWDRLPRKMLSSWVVSKRPRGCPKMTYGRSIRKC
MSKCGINVDNWFVMAX Run BLAST on NCBI transcript from alignment at sc0000665:116351..118351 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028149 ID=TCONS_00028149|Name=TCONS_00028149|organism=Clytia hemisphaerica|type=transcript|length=2001bp|location=Sequence derived from alignment at sc0000665:116351..118351 (Clytia hemisphaerica)
AATTTGACGAAAAGAACTTAAATGCTCTCATAGATGCCAGAAATGAGGCT
ATGAGACGTGTTTTCAATAAAAGAACTCGTTTTTCAGAAGAGAGATTACG
GTTACTACGAACTAAAGTAAGGAGTGCCAAAAATAAGTGGCTCCATTACA
TCTCTCACGCAACTAATGTAACTGTCGGTACTAAGACTGCTTGGGACAAT
GTGAAACTGCTAAAAAAAGGACTGTCAAAAGTTAAACCGGTGACTCAAAA
GCAATTGAAAAAACCAGACGGTACTTTATGCAAAACCCCGGATGAAAACG
CTACCGTTTTCAAAGATCATTTccaaaaactttatgaaaatcaAGTCAAT
TTTGATGAAACTGTCTTAGATCTCCTGTCCCAAAGACCGGTCTTCGAAAA
CTGTGATGAAATTCCCTCGGATGAAGAAATAAGGACTGCCatttcaaagt
tgaaaaataaagcTCCAGGAGAGTCTGGAGTGATGACCCAATCGtggaaa
ataattatcgacagcCAAGAAATTTTCCAGATATTGAAATCAATCATAAC
TGATTTCTGGGTAACCGAAACAGTACCTAAAGAATGGAACATTGGCAGGC
TTAATGTGTTACCGAAAAAAGGAGATCTTTCCTTGCCAAAAAATTACAGA
GGAATCATGCTCCTTGAAAATGCATATAAAATTATTGCAATTATTCTACA
TCGTAGACTTCTACCGATTGAGGAAAGTTTAGATCATGAGAGTCAATCAG
GTTTCCGCCCTGGTAGAGGCTGTATGGATGCTGTGTTTACCGTTAAAACT
GCCATAAAGAAAAGACGAGAACATGGACTGGAGACCTGGATTTTATTCCT
AGATCTAGTTAAAGCTTTCGACCGTGTTCCGAGAATCGCTTTGTGGAAGG
TACTTGAGAAATATGGAGTACCTTTGAAATTGATAAATCTCTTAATAGTT
TTACACGCTGACTTCACTGTGAAATTCGTTATAGGCGATGTAGTCCGTAC
CATTAACAGCATCGTCGGTGTGAAACAAGGTGATATTTTGGGACCGCTAT
TGTTTACCTTTTACATTACCGCAATGATTGAAACCTGGAAGTTATCCTGT
GGTATACCGTTTTGCATATTTCGGAGTAAGAGTGATTTTGTAATGACCGG
TCGTAGAACAACCACGAAAGGAGAAGATTTCGAGCTTCCAGACTCGGAAT
ATGCAGACGATACGGCTTTGTTATTTGAGAGTCGAGATCATATCCAACAG
GGAGCTACTTCAATAATCGTCCACTTTGATCGTTTCGGAATGGAAATTCA
TACCGGTGCAATAAATCCCAAGTCAGACTCCAAAACGGAGATATTGTTCT
GTGCAAAACCGATATTCATGTATGACAACCCTGAAACCCTTGATAATGTC
GACTTATCTGATGTAATTATTGATGAAAAGCGTTATTTGCCCATTGTTGA
CGAGTTTTGTTACCTTGGTAGTATAGTTACCAACGATTGTACCGATGAAA
AGGATGTGGATACCCGTATTGCCAAAGCAAGTGGTGCTTTTGGAATGTTG
AGAAAATGTTTGTTTGCATCATCTGATATTACCAATAAGGCCAAAGGATC
AATATTTCGTTCGTTAATCTTACCAATTCTTCTTTATGGTAGTGAATGTT
GGTGCATGACGGAATCTTTATTGAGAAAGATTCGTAGCTTTTACCATGGT
TGTATACGTAGTATGTGCCGAGTAAATCGAAAGCACACATTTCTACATAG
AATCTCAACTGATGAGCTTCTTGAACGTGTTGGGCTCGAATCTATCGAAA
CGTATATTTATAGACAGCAATTGAGGTGGATTGGTCACGTGAGTAGGATG
GACTGGGATCGTCTTCCTCGGAAAATGCTTTCCTCATGGGTAGTATCGAA
ACGACCCAGGGGATGTCCTAAGATGACGTATGGTCGTTCAATTCGAAAAT
GTATGTCTAAATGTGGTATAAATGTTGATAATTGGTTTGTTATGGCTGGN
N Coding sequence (CDS) from alignment at sc0000665:116351..118351 >TCONS_00028149 ID=TCONS_00028149|Name=TCONS_00028149|organism=Clytia hemisphaerica|type=CDS|length=1998bp|location=Sequence derived from alignment at sc0000665:116351..118351 (Clytia hemisphaerica)
TTTGACGAAAAGAACTTAAATGCTCTCATAGATGCCAGAAATGAGGCTAT
GAGACGTGTTTTCAATAAAAGAACTCGTTTTTCAGAAGAGAGATTACGGT
TACTACGAACTAAAGTAAGGAGTGCCAAAAATAAGTGGCTCCATTACATC
TCTCACGCAACTAATGTAACTGTCGGTACTAAGACTGCTTGGGACAATGT
GAAACTGCTAAAAAAAGGACTGTCAAAAGTTAAACCGGTGACTCAAAAGC
AATTGAAAAAACCAGACGGTACTTTATGCAAAACCCCGGATGAAAACGCT
ACCGTTTTCAAAGATCATTTccaaaaactttatgaaaatcaAGTCAATTT
TGATGAAACTGTCTTAGATCTCCTGTCCCAAAGACCGGTCTTCGAAAACT
GTGATGAAATTCCCTCGGATGAAGAAATAAGGACTGCCatttcaaagttg
aaaaataaagcTCCAGGAGAGTCTGGAGTGATGACCCAATCGtggaaaat
aattatcgacagcCAAGAAATTTTCCAGATATTGAAATCAATCATAACTG
ATTTCTGGGTAACCGAAACAGTACCTAAAGAATGGAACATTGGCAGGCTT
AATGTGTTACCGAAAAAAGGAGATCTTTCCTTGCCAAAAAATTACAGAGG
AATCATGCTCCTTGAAAATGCATATAAAATTATTGCAATTATTCTACATC
GTAGACTTCTACCGATTGAGGAAAGTTTAGATCATGAGAGTCAATCAGGT
TTCCGCCCTGGTAGAGGCTGTATGGATGCTGTGTTTACCGTTAAAACTGC
CATAAAGAAAAGACGAGAACATGGACTGGAGACCTGGATTTTATTCCTAG
ATCTAGTTAAAGCTTTCGACCGTGTTCCGAGAATCGCTTTGTGGAAGGTA
CTTGAGAAATATGGAGTACCTTTGAAATTGATAAATCTCTTAATAGTTTT
ACACGCTGACTTCACTGTGAAATTCGTTATAGGCGATGTAGTCCGTACCA
TTAACAGCATCGTCGGTGTGAAACAAGGTGATATTTTGGGACCGCTATTG
TTTACCTTTTACATTACCGCAATGATTGAAACCTGGAAGTTATCCTGTGG
TATACCGTTTTGCATATTTCGGAGTAAGAGTGATTTTGTAATGACCGGTC
GTAGAACAACCACGAAAGGAGAAGATTTCGAGCTTCCAGACTCGGAATAT
GCAGACGATACGGCTTTGTTATTTGAGAGTCGAGATCATATCCAACAGGG
AGCTACTTCAATAATCGTCCACTTTGATCGTTTCGGAATGGAAATTCATA
CCGGTGCAATAAATCCCAAGTCAGACTCCAAAACGGAGATATTGTTCTGT
GCAAAACCGATATTCATGTATGACAACCCTGAAACCCTTGATAATGTCGA
CTTATCTGATGTAATTATTGATGAAAAGCGTTATTTGCCCATTGTTGACG
AGTTTTGTTACCTTGGTAGTATAGTTACCAACGATTGTACCGATGAAAAG
GATGTGGATACCCGTATTGCCAAAGCAAGTGGTGCTTTTGGAATGTTGAG
AAAATGTTTGTTTGCATCATCTGATATTACCAATAAGGCCAAAGGATCAA
TATTTCGTTCGTTAATCTTACCAATTCTTCTTTATGGTAGTGAATGTTGG
TGCATGACGGAATCTTTATTGAGAAAGATTCGTAGCTTTTACCATGGTTG
TATACGTAGTATGTGCCGAGTAAATCGAAAGCACACATTTCTACATAGAA
TCTCAACTGATGAGCTTCTTGAACGTGTTGGGCTCGAATCTATCGAAACG
TATATTTATAGACAGCAATTGAGGTGGATTGGTCACGTGAGTAGGATGGA
CTGGGATCGTCTTCCTCGGAAAATGCTTTCCTCATGGGTAGTATCGAAAC
GACCCAGGGGATGTCCTAAGATGACGTATGGTCGTTCAATTCGAAAATGT
ATGTCTAAATGTGGTATAAATGTTGATAATTGGTTTGTTATGGCTGGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028149-exon-sc0000665-1491911889:116351..118351 | TCONS_00028149-exon-sc0000665-1491911889:116351..118351 | Clytia hemisphaerica | exon |
| TCONS_00028149-exon-sc0000665-1510915933:116351..118351 | TCONS_00028149-exon-sc0000665-1510915933:116351..118351 | Clytia hemisphaerica | exon |
| TCONS_00028149-exon-sc0000665-1575043694:116351..118351 | TCONS_00028149-exon-sc0000665-1575043694:116351..118351 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000665 | supercontig | sc0000665:116351..118351 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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