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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028141 ID=TCONS_00028141|Name=TCONS_00028141|organism=Clytia hemisphaerica|type=transcript|length=2678bpRun BLAST on NCBI protein sequence of TCONS_00028141-protein >TCONS_00028141-protein ID=TCONS_00028141-protein|Name=TCONS_00028141-protein|organism=Clytia hemisphaerica|type=polypeptide|length=838bp MEFFKFFIFIILAIPICIQSDFVPFGEEFGDDYGNAGDDVATCFSNFSQERun BLAST on NCBI transcript from alignment at sc0000665:56289..76629- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028141 ID=TCONS_00028141|Name=TCONS_00028141|organism=Clytia hemisphaerica|type=transcript|length=20341bp|location=Sequence derived from alignment at sc0000665:56289..76629- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000665:56289..76629- >TCONS_00028141 ID=TCONS_00028141|Name=TCONS_00028141|organism=Clytia hemisphaerica|type=CDS|length=25140bp|location=Sequence derived from alignment at sc0000665:56289..76629- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028141 vs. Swiss-Prot (Human)
Match: LRP2 (Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens GN=LRP2 PE=1 SV=3) HSP 1 Score: 164.466 bits (415), Expect = 5.063e-41 Identity = 116/376 (30.85%), Postives = 188/376 (50.00%), Query Frame = 1
Query: 829 LESPKCLYCPHGFRTVNASCQ-KLDEFIMVVDGNEITFLDAKLDDEAVPPSQPILNLHYVRAIDFDYESRMIYYSDNAEGTISRVDIYG------NNKIVMANQTFCESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFH-GRPRAIVLMPCDGYMYWTDWGTKPCIKHATMDGLNPKXXXXXXXXXXXXXAVDKDENRLYWTDVSLNRIESSDLDGNNRKIILQADNLYILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQELLDGGLNRYPKGIRIFSKSKQNCTRTLCHKDITRCTDICMPSNNLVHCSCP--INKTLTDGYR-CIQTAKAGLNCSDTMTSFICSDESKCISKASICDGYYDCFDGSDE 1923
L +PKC ++ +C + F++ N + L ++ + PP Q I V ++D+D S IY++ N + ++ ++ + + +A+DW+ +R+Y+ D + +N ++ DG ++ V+ +PRAIVL PC GY+YW DW T I+ AT+ G ++ + L + +GL +D +E+ LYW D SL RIE S L G +R++I+ A ++ ++LY YIY+TDL T+ + R K Q + L P+GI K+++ C + C+ IC P N C CP N L + + CI G C +SF CS+ +CIS+ CD DC DGSDE
Sbjct: 2363 LHTPKCDCAFGTLQSDGKNCAISTENFLIFALSNSLRSLHLDPENHS-PPFQTINVERTVMSLDYDSVSDRIYFTQNLASGVGQISYATLSSGIHTPTVIASGIGTADGIAFDWITRRIYYSDYLNQMINSMAEDGSNRTVIARVPKPRAIVLDPCQGYLYWADWDTHAKIERATLGGNFRVPIVNSSLVMPSGLTLDYEEDLLYWVDASLQRIERSTLTGVDREVIVNA-AVHAFGLTLYGQYIYWTDLYTQRIYRANKYDGSGQIAMTTNLLSQPRGINTVVKNQKQQCNNPCEQFNGGCSHICAPGPNGAECQCPHEGNWYLANNRKHCI--VDNGERCG--ASSFTCSN-GRCISEEWKCDNDNDCGDGSDE 2731 HSP 2 Score: 143.665 bits (361), Expect = 1.538e-34 Identity = 102/328 (31.10%), Postives = 157/328 (47.87%), Query Frame = 1
Query: 994 LHYVRAIDFDYESRMIYYSDNAEGTISRVDIYGNNKIVMANQTF--CESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFH-----------GRPRAIVLMPCDGYMYWTDWGTKPCIKHATMDGLNPKXXXXXXXXXXXXXAVDKDENRLYWTDVSLNRIESSDLDGNNRKIILQADNLYILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQELLDGGLNRYPKGIRIFSKSKQNCTRTLCHKDITRCTDICM--PSNNLVHCSCPINKTLTDGYRCIQTAKAGL---NCSDTMTSFICSDESKCISKASICDGYYDCFDGSDE 1923
L V A+DFD + +Y+ D I R+ + NK + N ESLA DWV+++LYW+DA D + +G + +L PR + L P GY+YW DWG + I MDG N ++I T L G+ +D + LYW D L IE SDL+G++R + + AI+++ + IY+TD T+++ + K +++ L +R P I ++ +Q C + C+ +C+ P C CP D +R +Q + + CS T F+C++ KCI CDG DC DGSDE
Sbjct: 3226 LDNVVALDFDRVEKRLYWIDTQRQVIERMFLNKTNKETIINHRLPAAESLAVDWVSRKLYWLDARLDGLFVSDLNGGHRRMLAQHCVDANNTFCFDNPRGLALHPQYGYLYWADWGHRAYIGRVGMDGTNKSVIISTKLEWPNGITIDYTNDLLYWADAHLGYIEYSDLEGHHRHTVYDGALPHPFAITIFEDTIYWTDWNTRTVEKGNKYDGSNRQTLVNTTHR-PFDIHVYHPYRQPIVSNPCGTNNGGCSHLCLIKPGGKGFTCECP------DDFRTLQLSGSTYCMPMCSSTQ--FLCANNEKCIPIWWKCDGQKDCSDGSDE 3544 HSP 3 Score: 125.946 bits (315), Expect = 4.367e-29 Identity = 103/352 (29.26%), Postives = 166/352 (47.16%), Query Frame = 1
Query: 931 ITFLDAKLDDEAVPPSQPILNLHYVRAIDFDYESRMIYYSDNAEGTISRVDIYGNNKIVMANQTF--CESLAWDWVNKRLYWIDA--ADDTVNRLSRDGYSKEVLFHGRPRAIVLMPCDGYMYWTDWGTKPCIKHATMDGLNPKXXXXXXXXXXXXXAVDKDENRLYWTDVSLNRIESSDLDGNNRKIILQADNL-YILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQELLDGGLN--RYPKGIRIFSKSKQNCTRTLCHKDITRCTDICMPSNNLVH-CSCPINKTLTDGYRCIQ--------TAKAGLNCSDTMTSFICSDESKCISKASICDGYYDCFDGSDEQNCTS 1938
I F + +D VP S N + IDFD + I++SD ++ I + I G + ++A ESLA+DW++K LYW D+ +V RL+ V + PR++V+ P GY+++TDW I A DG + VI T LG GLA+D +RLYW D ++IE S DG +R+ + + + + ++++ +++FTD +++RV K G ++ G+ + K + ++ N H + C+ C P N C CP L + + T + GL SF C + +C+ +CDG DC D SDEQ C +
Sbjct: 722 IPFTLSTQEDVMVPVSG---NPSFFVGIDFDAQDSTIFFSDMSKHMIFKQKIDGTGREILAANRVENVESLAFDWISKNLYWTDSHYKSISVMRLADKTRRTVVQYLNNPRSVVVHPFAGYLFFTDWFRPAKIMRAWSDGSHLLPVINTTLGWPNGLAIDWAASRLYWVDAYFDKIEHSTFDGLDRRRLGHIEQMTHPFGLAIFGEHLFFTDWRLGAIIRVRKADGGEMTVIRSGIAYILHLKSYDVNIQTGSNACNQPTHPN-GDCSHFCFPVPNFQRVCGCPYGMRLASNHLTCEGDPTNEPPTEQCGL------FSFPCKN-GRCVPNYYLCDGVDDCHDNSDEQLCGT 1062 HSP 4 Score: 113.62 bits (283), Expect = 2.476e-25 Identity = 80/276 (28.99%), Postives = 144/276 (52.17%), Query Frame = 1
Query: 985 ILNLHYVRAIDFDYESRMIYYSDNAEGTISRVDIYGNNKIVMANQT--FCESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFHG---RPRAIVLMP--CDGYMYWTDWGTKPCIKHATMDGLNPKXXXXXXXXXXXXXAVDKDENRLYWTDVSLNRIESSDLDGNNRKIILQADNL--YILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQELLDGGLNRYPKGIRIFSKSKQNCTRTLCHKDITRCTDICMPSNNLVH---CSCPINKTLT 1776
+ N Y+ A+DFD S I++SD +G G ++ V+ + + E++A DWV + LYW D A +T+ DG + VL PR + L P + ++W+DWG P I+ A+MDG +++ + GL +D LY+ D L+ ++ D +G++R+ ++ +D + + A++L+ + +Y+TD T+ +MR K G+Q ++ + ++P GI SKQ + C +RC+ +C+ S+ H C CP +L+
Sbjct: 1462 VENGSYIVAVDFDSISGRIFWSDATQGKTWSAFQNGTDRRVVFDSSIILTETIAIDWVGRNLYWTDYALETIEVSKIDGSHRTVLISKNLTNPRGLALDPRMNEHLLFWSDWGHHPRIERASMDGSMRTVIVQDKIFWPCGLTIDYPNRLLYFMDSYLDYMDFCDYNGHHRRQVIASDLIIRHPYALTLFEDSVYWTDRATRRVMRANKWHGGNQSVVMYNI-QWPLGIVAVHPSKQPNSVNPCA--FSRCSHLCLLSSQGPHFYSCVCPSGWSLS 1734 HSP 5 Score: 97.4413 bits (241), Expect = 2.221e-20 Identity = 75/298 (25.17%), Postives = 141/298 (47.32%), Query Frame = 1
Query: 1009 AIDFDYESRMIYYSDNAEGTISRVDIYGNN--KIVMANQTFCESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFH---GRPRAIVLMPCDGYMYWTDWGT---KPCIKHATMDGLNPKXXXXXXXXXXXXXAVDKDENRLYWTDVSLNRIESSDLDGNNRKIILQADNL--YILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQELLDGGLNRYPKGIRIFSKSKQNCTRTLCHKDITRCTDICMPSNNLVHCSCPINKTLTDGYRCIQTAKAGLNCSDTMTSFICSDESKCIS 1872
+ F Y + ++++D + + VDI G N +++ + E+LA DWVN ++Y ++ + ++ ++ DG + L G PR I + P GY++++DW + +P ++ A MDG N K ++ T LG G+ +D R+YW D + IE+ DG RK ++ +L + +SL+ ++FTD ++++ K + ++ R P G+ ++ +Q C + C +C+ S ++T DG G C T + +DE CI+
Sbjct: 428 GVAFHYHLQRVFWTDTVQNKVFSVDINGLNIQEVLNVSVETPENLAVDWVNNKIYLVETKVNRIDMVNLDGSYRVTLITENLGHPRGIAVDPTVGYLFFSDWESLSGEPKLERAFMDGSNRKDLVKTKLGWPAGVTLDMISKRVYWVDSRFDYIETVTYDGIQRKTVVHGGSLIPHPFGVSLFEGQVFFTDWTKMAVLKANKFTETNPQVYYQASLR-PYGVTVYHSLRQPYATNPCKDNNGGCEQVCVLS----------HRTDNDGL--------GFRCKCTFGFQLDTDERHCIA 706 HSP 6 Score: 95.5153 bits (236), Expect = 9.396e-20 Identity = 80/326 (24.54%), Postives = 151/326 (46.32%), Query Frame = 1
Query: 853 CPHGFRTVN--ASCQKLDEFIMVVDGNEITF-----LDAKLDDEAVPPSQPILNLHYVRAIDFDYESRMIYYSDNAEGTISRVDIYGNNKIVMANQTFCE---SLAWDWVNKRLYWIDAADDTVNRLSRDG---YSKEVLFH-------GRPRAIVLMPCDGYMYWTDWGTKPC----IKHATMDGLNPKXXXXXXXXXXXXXAVDKDENRLYWTDVSLNRIESSDLDGNNRKIILQADNLYILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQELLDGGLNRYPKGIRIFSKSKQNCTRTLCHKDITRCTDICMP-SNNLVHCSC 1755
CP G+ +C + D+ ++ I F + K +D VP I + ++FD + IY+ +N G I RV G N+ V A+ + +LA DW+++ LY + ++ L+ G Y K ++ + G P I + P G +YW+D GT I A MDG + K + L + + +D +E +LYW IE ++DG +R I++ + + I+++++++Y+TD + + RV+K ++ +L + +G++++ + + C ++ C IC+P L C+C
Sbjct: 1727 CPSGWSLSPDLLNCLRDDQPFLITVRQHIIFGISLNPEVKSNDAMVP----IAGIQNGLDVEFDDAEQYIYWVENP-GEIHRVKTDGTNRTVFASISMVGPSMNLALDWISRNLYSTNPRTQSIEVLTLHGDIRYRKTLIANDGTALGVGFPIGITVDPARGKLYWSDQGTDSGVPAKIASANMDGTSVKTLFTGNLEHLECVTLDIEEQKLYWAVTGRGVIERGNVDGTDRMILVHQLS-HPWGIAVHDSFLYYTDEQYEVIERVDKATGANKIVLRDNVPNL-RGLQVYHRRNAAESSNGCSNNMNACQQICLPVPGGLFSCAC 2045 HSP 7 Score: 92.8189 bits (229), Expect = 6.227e-19 Identity = 82/295 (27.80%), Postives = 147/295 (49.83%), Query Frame = 1
Query: 976 SQPILNLHYVRAIDFDYESR-----MIYYSDNAEGT----ISRVDI----YGNNKIV------MANQTFCESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFH---GRPRAIVLMPCDGYMYWTDWGTKPCIKHATMDGLNPKXXXXXXXXXXXXXAVDK-DENRLYWTDVSLNRIESSDLDGNNRKIIL-QADNLYILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQE--LLDGGLNRYPKGIRIFSKSKQNCTRTLCHKDITRCTDICMPSNNLVHCSCPINKTLTDG 1782
S+ + + Y++A+D+D++ + ++YY+ EG+ I R I G N +V + + +A DWV + +YW D + + DG ++ L +P AI + P G M+WTDWG +P I+ A M+G + I++ LG TGL++D + +R+YW+D + IE+ DG +R++I +A N Y L I + + +Y+ + + K G G +E L+ +N + +RIF + + N + K I C+ +C+ C+CP + +G
Sbjct: 4075 SEYLQDEEYIQAVDYDWDPKDIGLSVVYYTVRGEGSRFGAIKRAYIPNFESGRNNLVQEVDLKLKYVMQPDGIAVDWVGRHIYWSDVKNKRIEVAKLDGRYRKWLISTDLDQPAAIAVNPKLGLMFWTDWGKEPKIESAWMNGEDRNILVFEDLGWPTGLSIDYLNNDRIYWSDFKEDVIETIKYDGTDRRVIAKEAMNPYSLDI--FEDQLYWISKEKGEVWKQNKFGQGKKEKTLV---VNPWLTQVRIFHQLRYNKSVPNLCKQI--CSHLCLLRPGGYSCACPQGSSFIEG 4362 The following BLAST results are available for this feature:
BLAST of TCONS_00028141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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