TCONS_00028141-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028141-protein
Unique NameTCONS_00028141-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length838

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028141-protein ID=TCONS_00028141-protein|Name=TCONS_00028141-protein|organism=Clytia hemisphaerica|type=polypeptide|length=838bp
MEFFKFFIFIILAIPICIQSDFVPFGEEFGDDYGNAGDDVATCFSNFSQE
FPLFFTKNHSKVCISSNGYITVDKHVRRVAASLISDYTVLVPFNHDMRSL
GNDTFFRATKNKTILKMIDEDIAQKHSREFRSKEAIVITFNNLQYLRNSN
LIYNYQAVLATDYDKVYAIFHYERMDTPGYNNIGFNEPITTNPCNTTLIF
NLNENNLTTSSNIDKPGKFVFLLESPKCLYCPHGFRTVNASCQKLDEFIM
VVDGNEITFLDAKLDDEAVPPSQPILNLHYVRAIDFDYESRMIYYSDNAE
GTISRVDIYGNNKIVMANQTFCESLAWDWVNKRLYWIDAADDTVNRLSRD
GYSKEVLFHGRPRAIVLMPCDGYMYWTDWGTKPCIKHATMDGLNPKIVIG
TGLGLVTGLAVDKDENRLYWTDVSLNRIESSDLDGNNRKIILQADNLYIL
AISLYNNYIYFTDLVTKSLMRVEKKGNGHQELLDGGLNRYPKGIRIFSKS
KQNCTRTLCHKDITRCTDICMPSNNLVHCSCPINKTLTDGYRCIQTAKAG
LNCSDTMTSFICSDESKCISKASICDGYYDCFDGSDEQNCTSQSTIFPST
SLSLSYQTSLPTSTVFKPSKSTMEFSLKTSSAIHQSTADKDSSATLYSSS
ISPSTSTMTSSSSSVITSNHSSATLRSLSIIPSTPTMTSSSSSVTTSNHS
SATLHSSSISPSTSTMTSSSSSVTTSNHSATLHSSSISPSTSTMASSSSS
VTTSNHSSAKLHSSSISPSTSTMTSSSSSVTTSNHSSATLHSSSISPSTS
TMTSSSSSVTTSNHSATLHSSSISPSTSTMTSSSSSVT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015923XLOC_015923Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028141TCONS_00028141Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000033LDLR_classB_rpt
IPR002172LDrepeatLR_classA_rpt
IPR003886NIDO_dom
IPR0110426-blade_b-propeller_TolB-like
IPR023415LDLR_class-A_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0007160cell-matrix adhesion
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007160 cell-matrix adhesion
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000033LDLR class B repeatSMARTSM00135LY_2coord: 439..479
e-value: 1.3
score: 17.5
coord: 271..313
e-value: 0.032
score: 23.4
coord: 314..354
e-value: 2.8
score: 14.7
coord: 355..395
e-value: 0.014
score: 24.6
coord: 396..438
e-value: 1.0E-11
score: 54.9
IPR000033LDLR class B repeatPFAMPF00058Ldl_recept_bcoord: 416..445
e-value: 2.4E-7
score: 31.0
coord: 372..412
e-value: 6.9E-5
score: 23.2
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 416..458
score: 13.73
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 459..500
score: 5.608
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 372..415
score: 12.987
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 332..358
score: 9.135
IPR000033LDLR class B repeatPROSITEPS51120LDLRBcoord: 291..331
score: 7.093
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSMARTSM00192LDLa_2coord: 552..592
e-value: 8.7E-8
score: 41.9
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPFAMPF00057Ldl_recept_acoord: 557..590
e-value: 1.2E-6
score: 28.5
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 552..591
score: 12.738
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 558..594
IPR003886NIDO domainSMARTSM00539ylk_9coord: 92..228
e-value: 0.0016
score: 7.6
NoneNo IPR availableGENE3D4.10.400.10coord: 552..578
e-value: 1.4E-8
score: 34.4
NoneNo IPR availableGENE3D4.10.1220.10coord: 579..612
e-value: 2.3E-10
score: 39.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 684..838
NoneNo IPR availableCDDcd00112LDLacoord: 560..590
e-value: 8.87011E-8
score: 48.7422
NoneNo IPR availableSUPERFAMILY63825YWTD domaincoord: 249..500
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 233..551
e-value: 3.1E-49
score: 167.4
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved sitePROSITEPS01209LDLRA_1coord: 568..590

Blast
BLAST of TCONS_00028141-protein vs. Swiss-Prot (Human)
Match: LRP2 (Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens GN=LRP2 PE=1 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 1.183e-43
Identity = 108/328 (32.93%), Postives = 169/328 (51.52%), Query Frame = 0
Query:  270 PPSQPILNLHYVRAIDFDYESRMIYYSDNAEGTISRVDI------YGNNKIVMANQTFCESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFH-GRPRAIVLMPCDGYMYWTDWGTKPCIKHATMDGLNPKIVIGTGLGLVTGLAVDKDENRLYWTDVSLNRIESSDLDGNNRKIILQADNLYILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQELLDGGLNRYPKGIRIFSKSKQNCTRTLCHKDITRCTDICMPSNNLVHCSCP--INKTLTDGYR-CIQTAKAGLNCSDTMTSFICSDESKCISKASICDGYYDCFDGSDE 587
            PP Q I     V ++D+D  S  IY++ N    + ++             ++ +     + +A+DW+ +R+Y+ D  +  +N ++ DG ++ V+    +PRAIVL PC GY+YW DW T   I+ AT+ G     ++ + L + +GL +D +E+ LYW D SL RIE S L G +R++I+ A  ++   ++LY  YIY+TDL T+ + R  K     Q  +   L   P+GI    K+++      C +    C+ IC P  N   C CP   N  L +  + CI     G  C    +SF CS+  +CIS+   CD   DC DGSDE
Sbjct: 2410 PPFQTINVERTVMSLDYDSVSDRIYFTQNLASGVGQISYATLSSGIHTPTVIASGIGTADGIAFDWITRRIYYSDYLNQMINSMAEDGSNRTVIARVPKPRAIVLDPCQGYLYWADWDTHAKIERATLGGNFRVPIVNSSLVMPSGLTLDYEEDLLYWVDASLQRIERSTLTGVDREVIVNA-AVHAFGLTLYGQYIYWTDLYTQRIYRANKYDGSGQIAMTTNLLSQPRGINTVVKNQKQQCNNPCEQFNGGCSHICAPGPNGAECQCPHEGNWYLANNRKHCI--VDNGERCG--ASSFTCSN-GRCISEEWKCDNDNDCGDGSDE 2731          

HSP 2 Score: 156.762 bits (395), Expect = 8.038e-39
Identity = 102/328 (31.10%), Postives = 157/328 (47.87%), Query Frame = 0
Query:  278 LHYVRAIDFDYESRMIYYSDNAEGTISRVDIYGNNKIVMANQTF--CESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFH-----------GRPRAIVLMPCDGYMYWTDWGTKPCIKHATMDGLNPKIVIGTGLGLVTGLAVDKDENRLYWTDVSLNRIESSDLDGNNRKIILQADNLYILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQELLDGGLNRYPKGIRIFSKSKQNCTRTLCHKDITRCTDICM--PSNNLVHCSCPINKTLTDGYRCIQTAKAGLN---CSDTMTSFICSDESKCISKASICDGYYDCFDGSDE 587
            L  V A+DFD   + +Y+ D     I R+ +   NK  + N      ESLA DWV+++LYW+DA  D +     +G  + +L               PR + L P  GY+YW DWG +  I    MDG N  ++I T L    G+ +D   + LYW D  L  IE SDL+G++R  +      +  AI+++ + IY+TD  T+++ +  K    +++ L    +R P  I ++   +Q      C  +   C+ +C+  P      C CP      D +R +Q + +      CS T   F+C++  KCI     CDG  DC DGSDE
Sbjct: 3226 LDNVVALDFDRVEKRLYWIDTQRQVIERMFLNKTNKETIINHRLPAAESLAVDWVSRKLYWLDARLDGLFVSDLNGGHRRMLAQHCVDANNTFCFDNPRGLALHPQYGYLYWADWGHRAYIGRVGMDGTNKSVIISTKLEWPNGITIDYTNDLLYWADAHLGYIEYSDLEGHHRHTVYDGALPHPFAITIFEDTIYWTDWNTRTVEKGNKYDGSNRQTLVNTTHR-PFDIHVYHPYRQPIVSNPCGTNNGGCSHLCLIKPGGKGFTCECP------DDFRTLQLSGSTYCMPMCSSTQ--FLCANNEKCIPIWWKCDGQKDCSDGSDE 3544          

HSP 3 Score: 142.124 bits (357), Expect = 3.120e-34
Identity = 104/372 (27.96%), Postives = 175/372 (47.04%), Query Frame = 0
Query:  257 ITFLDAKLDDEAVPPSQPILNLHYVRAIDFDYESRMIYYSDNAEGTISRVDIYGNNKIVMANQTF--CESLAWDWVNKRLYWIDAADDTVN--RLSRDGYSKEVLFHGRPRAIVLMPCDGYMYWTDWGTKPCIKHATMDGLNPKIVIGTGLGLVTGLAVDKDENRLYWTDVSLNRIESSDLDGNNRKIILQADNL-YILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQELLDGGLNR--YPKGIRIFSKSKQNCTRTLCHKDITRCTDICMPSNNLVH-CSCPINKTLTDGYRCIQ--------TAKAGLNCSDTMTSFICSDESKCISKASICDGYYDCFDGSDEQNCTSQSTIFPSTSLSLSYQTSLPT 612
            I F  +  +D  VP S    N  +   IDFD +   I++SD ++  I +  I G  + ++A       ESLA+DW++K LYW D+   +++  RL+       V +   PR++V+ P  GY+++TDW     I  A  DG +   VI T LG   GLA+D   +RLYW D   ++IE S  DG +R+ +   + + +   ++++  +++FTD    +++RV K   G   ++  G+    + K   +  ++  N      H +   C+  C P  N    C CP    L   +   +        T + GL       SF C +  +C+    +CDG  DC D SDEQ C + +    S++ +  +   +P 
Sbjct:  722 IPFTLSTQEDVMVPVSG---NPSFFVGIDFDAQDSTIFFSDMSKHMIFKQKIDGTGREILAANRVENVESLAFDWISKNLYWTDSHYKSISVMRLADKTRRTVVQYLNNPRSVVVHPFAGYLFFTDWFRPAKIMRAWSDGSHLLPVINTTLGWPNGLAIDWAASRLYWVDAYFDKIEHSTFDGLDRRRLGHIEQMTHPFGLAIFGEHLFFTDWRLGAIIRVRKADGGEMTVIRSGIAYILHLKSYDVNIQTGSNACNQPTHPN-GDCSHFCFPVPNFQRVCGCPYGMRLASNHLTCEGDPTNEPPTEQCGL------FSFPCKN-GRCVPNYYLCDGVDDCHDNSDEQLCGTLNNTCSSSAFTCGHGECIPA 1082          

HSP 4 Score: 119.398 bits (298), Expect = 3.889e-27
Identity = 80/276 (28.99%), Postives = 144/276 (52.17%), Query Frame = 0
Query:  275 ILNLHYVRAIDFDYESRMIYYSDNAEGTISRVDIYGNNKIVMANQT--FCESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFHGR---PRAIVLMPC--DGYMYWTDWGTKPCIKHATMDGLNPKIVIGTGLGLVTGLAVDKDENRLYWTDVSLNRIESSDLDGNNRKIILQADNL--YILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQELLDGGLNRYPKGIRIFSKSKQNCTRTLCHKDITRCTDICMPSNNLVH---CSCPINKTLT 538
            + N  Y+ A+DFD  S  I++SD  +G        G ++ V+ + +    E++A DWV + LYW D A +T+     DG  + VL       PR + L P   +  ++W+DWG  P I+ A+MDG    +++   +    GL +D     LY+ D  L+ ++  D +G++R+ ++ +D +  +  A++L+ + +Y+TD  T+ +MR  K   G+Q ++   + ++P GI     SKQ  +   C    +RC+ +C+ S+   H   C CP   +L+
Sbjct: 1462 VENGSYIVAVDFDSISGRIFWSDATQGKTWSAFQNGTDRRVVFDSSIILTETIAIDWVGRNLYWTDYALETIEVSKIDGSHRTVLISKNLTNPRGLALDPRMNEHLLFWSDWGHHPRIERASMDGSMRTVIVQDKIFWPCGLTIDYPNRLLYFMDSYLDYMDFCDYNGHHRRQVIASDLIIRHPYALTLFEDSVYWTDRATRRVMRANKWHGGNQSVVMYNI-QWPLGIVAVHPSKQPNSVNPCA--FSRCSHLCLLSSQGPHFYSCVCPSGWSLS 1734          

HSP 5 Score: 113.235 bits (282), Expect = 2.884e-25
Identity = 82/295 (27.80%), Postives = 146/295 (49.49%), Query Frame = 0
Query:  272 SQPILNLHYVRAIDFDYESR-----MIYYSDNAEGT----ISRVDI----YGNNKIVMANQTFC------ESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFH---GRPRAIVLMPCDGYMYWTDWGTKPCIKHATMDGLNPKIVIGTGLGLVTGLAVDK-DENRLYWTDVSLNRIESSDLDGNNRKIIL-QADNLYILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQE--LLDGGLNRYPKGIRIFSKSKQNCTRTLCHKDITRCTDICMPSNNLVHCSCPINKTLTDG 540
            S+ + +  Y++A+D+D++ +     ++YY+   EG+    I R  I     G N +V             + +A DWV + +YW D  +  +     DG  ++ L      +P AI + P  G M+WTDWG +P I+ A M+G +  I++   LG  TGL++D  + +R+YW+D   + IE+   DG +R++I  +A N Y L I  + + +Y+       + +  K G G +E  L+   +N +   +RIF + + N +     K I  C+ +C+       C+CP   +  +G
Sbjct: 4075 SEYLQDEEYIQAVDYDWDPKDIGLSVVYYTVRGEGSRFGAIKRAYIPNFESGRNNLVQEVDLKLKYVMQPDGIAVDWVGRHIYWSDVKNKRIEVAKLDGRYRKWLISTDLDQPAAIAVNPKLGLMFWTDWGKEPKIESAWMNGEDRNILVFEDLGWPTGLSIDYLNNDRIYWSDFKEDVIETIKYDGTDRRVIAKEAMNPYSLDI--FEDQLYWISKEKGEVWKQNKFGQGKKEKTLV---VNPWLTQVRIFHQLRYNKSVPNLCKQI--CSHLCLLRPGGYSCACPQGSSFIEG 4362          

HSP 6 Score: 107.842 bits (268), Expect = 1.139e-23
Identity = 75/298 (25.17%), Postives = 141/298 (47.32%), Query Frame = 0
Query:  283 AIDFDYESRMIYYSDNAEGTISRVDIYGNN--KIVMANQTFCESLAWDWVNKRLYWIDAADDTVNRLSRDGYSKEVLFH---GRPRAIVLMPCDGYMYWTDWGT---KPCIKHATMDGLNPKIVIGTGLGLVTGLAVDKDENRLYWTDVSLNRIESSDLDGNNRKIILQADNL--YILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQELLDGGLNRYPKGIRIFSKSKQNCTRTLCHKDITRCTDICMPSNNLVHCSCPINKTLTDGYRCIQTAKAGLNCSDTMTSFICSDESKCIS 570
             + F Y  + ++++D  +  +  VDI G N  +++  +    E+LA DWVN ++Y ++   + ++ ++ DG  +  L     G PR I + P  GY++++DW +   +P ++ A MDG N K ++ T LG   G+ +D    R+YW D   + IE+   DG  RK ++   +L  +   +SL+   ++FTD    ++++  K    + ++      R P G+ ++   +Q      C  +   C  +C+ S          ++T  DG         G  C  T    + +DE  CI+
Sbjct:  428 GVAFHYHLQRVFWTDTVQNKVFSVDINGLNIQEVLNVSVETPENLAVDWVNNKIYLVETKVNRIDMVNLDGSYRVTLITENLGHPRGIAVDPTVGYLFFSDWESLSGEPKLERAFMDGSNRKDLVKTKLGWPAGVTLDMISKRVYWVDSRFDYIETVTYDGIQRKTVVHGGSLIPHPFGVSLFEGQVFFTDWTKMAVLKANKFTETNPQVYYQASLR-PYGVTVYHSLRQPYATNPCKDNNGGCEQVCVLS----------HRTDNDGL--------GFRCKCTFGFQLDTDERHCIA 706          

HSP 7 Score: 94.3597 bits (233), Expect = 1.555e-19
Identity = 71/276 (25.72%), Postives = 134/276 (48.55%), Query Frame = 0
Query:  274 PILNLHYVRAIDFDYESRMIYYSDNAEGTISRVDIYGNNKIVMANQTFCE---SLAWDWVNKRLYWIDAADDTVNRLSRDG---YSKEVLFH-------GRPRAIVLMPCDGYMYWTDWGTK---PC-IKHATMDGLNPKIVIGTGLGLVTGLAVDKDENRLYWTDVSLNRIESSDLDGNNRKIILQADNLYILAISLYNNYIYFTDLVTKSLMRVEKKGNGHQELLDGGLNRYPKGIRIFSKSKQNCTRTLCHKDITRCTDICMP-SNNLVHCSC 531
            PI  +     ++FD   + IY+ +N  G I RV   G N+ V A+ +      +LA DW+++ LY  +    ++  L+  G   Y K ++ +       G P  I + P  G +YW+D GT    P  I  A MDG + K +    L  +  + +D +E +LYW       IE  ++DG +R I++   + +   I+++++++Y+TD   + + RV+K    ++ +L   +    +G++++ +     +   C  ++  C  IC+P    L  C+C
Sbjct: 1773 PIAGIQNGLDVEFDDAEQYIYWVENP-GEIHRVKTDGTNRTVFASISMVGPSMNLALDWISRNLYSTNPRTQSIEVLTLHGDIRYRKTLIANDGTALGVGFPIGITVDPARGKLYWSDQGTDSGVPAKIASANMDGTSVKTLFTGNLEHLECVTLDIEEQKLYWAVTGRGVIERGNVDGTDRMILVHQLS-HPWGIAVHDSFLYYTDEQYEVIERVDKATGANKIVLRDNVPNL-RGLQVYHRRNAAESSNGCSNNMNACQQICLPVPGGLFSCAC 2045          

HSP 8 Score: 83.1889 bits (204), Expect = 4.986e-16
Identity = 85/343 (24.78%), Postives = 151/343 (44.02%), Query Frame = 0
Query:  231 CPHGFR--TVNASCQKLDEFIMVVDGNEITFLDAKLDDEA---VPPSQPILN-LHYVRAIDFDYESRMIYYSD-----NAEGTISRVDIYGNNKIVMANQTFCE----SLAWDWVNKRLYWIDA--ADDTVNRLSRDGYSKEVLFH---GRPRAIVLMPCDGYMYWTDWGTKPCIKHATMDGLNPKIVIGTGLGLVTGLAVDKDENRLYWTDVSLNRIESSDLDGNNRKIILQADNLYI-LAISLYNNYIYFTDLVTKSLMRVEKKGNGHQE--LLDGGLNRYPKGIRIFSKSKQ-----NCTRTLCHKDITRCTDIC--MPSNNLVHCSCPINKTLTDGYRC 543
            C  GF+    N SC   + FI+V   + I     +L D +   VP +    N LH    +D D  S  IY+ D      ++  I R+   G++ + +      E     +A DWV   LY+ +A  ++  +  L  +   + VL       PR IV+ P + Y++W D+G +P I+ + +D  N  +++  G+    GLAVD+ +  +YW D SL+ I    ++G N ++I           I+++ N I + D   K + +  K+    +   ++   +N + + + IF K  Q           C ++   C+ +C  +P  +   C C      +DG  C
Sbjct: 2045 CATGFKLNPDNRSCSPYNSFIVVSMLSAIRGFSLELSDHSETMVPVAGQGRNALH----VDVDVSSGFIYWCDFSSSVASDNAIRRIKPDGSSLMNIVTHGIGENGVRGIAVDWVAGNLYFTNAFVSETLIEVLRINTTYRRVLLKVTVDMPRHIVVDPKNRYLFWADYGQRPKIERSFLDCTNRTVLVSEGIVTPRGLAVDRSDGYVYWVDDSLDIIARIRINGENSEVIRYGSRYPTPYGITVFENSIIWVDRNLKKIFQASKEPENTEPPTVIRDNIN-WLRDVTIFDKQVQPRSPAEVNNNPCLENNGGCSHLCFALPGLHTPKCDCAFGTLQSDGKNC 2382          
The following BLAST results are available for this feature:
BLAST of TCONS_00028141-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRP21.183e-4332.93Low-density lipoprotein receptor-related protein 2... [more]
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